Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F5 I184 R1 278 29.6 1166432 97.3% 1134938 124.1

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGCAGACCAACCGCAGTAGCATTAATGACTTCACTGCCAAATACCCACAAACCTAAGCTGAGCAATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTTGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAATGATAAGCAAGATAACCCCAACCGGCAGGAAGCAGAGGAACCACTGCAACCAGCTAATCTGGATACCGGCAATTTTGCTGACGAACTC  >  NZ_CP009273/641090‑641376
                                                                                                                                         |                                                                                                                                                     
ggcatacgagatctagtacggtctcgtgggctcggagatgtgtataagagacagAAGCTGAGCAATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCAC                                                                                                                                          <  SRR3722139.538816/97‑1 (MQ=60)
  CAGACCAACCGCAGTAGCATTAATGACTTCACTGCCAAATACCCACAAACCTAAGCTGAGCAATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTG                                                                                                                                        <  SRR3722139.184962/151‑1 (MQ=60)
     ACCAACCGCAGTAGCATTAATGACTTCACTGCCAAATACCCACAAACCTAAGCTGAGCAATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGT                                                                                                                                     <  SRR3722139.438103/151‑1 (MQ=60)
          CCGCAGTAGCATTAATGACTTCACTGCCAAATACCCACAAACCTAAGCTGAGCAATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTTGCCACTTCTTCACTGTGTGTGAT                                                                                                                                <  SRR3722139.486668/151‑1 (MQ=60)
                       AATGACTTCACTGCCAAATACCCACAAACCTAAGCTGAGCAATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTAC                                                                                                                   <  SRR3722139.103753/151‑1 (MQ=60)
                           ACTTCACTGCCAAATACCCACAAACCTAAGCTGAGCAATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTTGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCA                                                                                                               <  SRR3722139.493384/151‑1 (MQ=60)
                              TCACTGCCAAATACCCACAAACCTAAGCTGAGCAATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCAC                                                                                                              <  SRR3722139.272775/149‑1 (MQ=60)
                                   GCCAAATACCCACAAACCTAAGCTGAGCAATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTTGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGG                                                                                                         <  SRR3722139.173886/149‑1 (MQ=60)
                                      cgagatctagtacggtctcgtgggctcggagatgtgtataagagacagCTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGC                                                                                                    <  SRR3722139.406300/103‑1 (MQ=60)
                                       AATACCCACAAACCTAAGCTGAGCAATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCC                                                                                                   <  SRR3722139.6670/151‑1 (MQ=60)
                                                 AACCTAAGCTGAGCAATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTTGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAAT                                                                                         >  SRR3722139.97346/1‑151 (MQ=60)
                                                   CCTAAGCTGAGCAATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAATG                                                                                        >  SRR3722139.414006/1‑150 (MQ=60)
                                                           GAGCAATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAATGATAAGCA                                                                                 >  SRR3722139.237408/1‑149 (MQ=60)
                                                                ATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTTGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACctgtctcttatacacatctccgagcccacgagaccgtact                                                                           >  SRR3722139.265907/1‑110 (MQ=60)
                                                                ATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAATGATAAGCAAGATAAC                                                                          >  SRR3722139.282594/1‑151 (MQ=60)
                                                                ATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAATGATAAGCAAGATAAC                                                                          >  SRR3722139.51796/1‑151 (MQ=60)
                                                                ATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAATGATAAGCAAGATAAC                                                                          >  SRR3722139.430521/1‑151 (MQ=60)
                                                                                 GTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAATGATAAGCAAGATAACCCCAACCGGCAGGAAGC                                                         <  SRR3722139.283236/151‑1 (MQ=60)
                                                                                        CTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTTGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGctgtctcttatacacatctccgagcccacgagaccgtactagatctcgtatgccg                                                  >  SRR3722139.245761/1‑96 (MQ=60)
                                                                                        CTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTTGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAATGATAAGCAAGATAACCCCAACCGGCAGGAAGCAGAGGA                                                   >  SRR3722139.277267/1‑150 (MQ=60)
                                                                                        CTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGctgtctcttatacacatctccgagcccacgagaccgtactagatctcgtatgccgtcttctgcttgaaaaaaaaaaaaa                                                   >  SRR3722139.34662/1‑71 (MQ=60)
                                                                                          CTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAATGATAAGCAAGATAACCCCAACCGGCAGGAAGCAGAGGAACC                                                >  SRR3722139.216135/1‑151 (MQ=60)
                                                                                          CTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAATGATAAGCAAGATAACCCCAACCGGCAGGAAGCAGAGGAACC                                                >  SRR3722139.70665/1‑151 (MQ=60)
                                                                                                                   TCAGTTCATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAATGATAAGCAAGATAACCCCAACCGGCAGGAAGCAGAGGAACCACTGCAACCAGCTAATCTGGATAC                        <  SRR3722139.85662/150‑1 (MQ=60)
                                                                                                                          ATCACCCGCCCAGGTCGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAATGATAAGCAAGATAACCCCAACCGGCAGGAAGCAGAGGAACCACTGCAACCAGCTAATCTGGATACCGGCAATT                >  SRR3722139.535717/1‑151 (MQ=60)
                                                                                                                                         CGCCACTTCTTCACTGTGAGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAATGATAAGCAAGATAACCCCAACCGGCAGGAAGCAGAGGAACCACTGCAACCAGCTAATCTGGATACCGGCAATTTTGCTGACGAACTC  <  SRR3722139.257661/150‑1 (MQ=60)
                                                                                                                                         |                                                                                                                                                     
AGCAGACCAACCGCAGTAGCATTAATGACTTCACTGCCAAATACCCACAAACCTAAGCTGAGCAATACAAGGCCAATCAGTGTCCACTCTCTGCGTGTCAGCGCACCCATGGTTTTCAGTTCATCACCCGCCCAGGTTGCCACTTCTTCACTGTGTGTGATTTCCGGTTTGTACAGCACGTAGGAAAGCCACGGCGCAATGATAAGCAAGATAACCCCAACCGGCAGGAAGCAGAGGAACCACTGCAACCAGCTAATCTGGATACCGGCAATTTTGCTGACGAACTC  >  NZ_CP009273/641090‑641376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑