Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 2 8
2 1 12
3 4 21

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 971 2278
Multiple Base Substitutions 1 2
Deletions 64 178
Insertions 15 31
Mobile Element Insertions 0 0
Amplifications 36 42
Gene Conversions 0 0
Inversions 0 0
Total 1087 2531

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4 0 18.2 1254402 94.2% 1181646 85.4
A1 F4 I88 R1 217 0 30.5 1742422 95.9% 1670982 87.3
A1 F4 I96 R1 227 0 23.3 882352 98.0% 864704 126.9
A1 F5 I97 R1 275 0 44.0 1733530 96.5% 1672856 122.0
A1 F5 I98 R1 10 0 14.2 839128 94.4% 792136 86.3
A1 F5 I99 R1 8 0 45.3 1827582 96.8% 1769099 122.8
A1 F5 I100 R1 10 0 30.5 2136404 85.7% 1830898 81.3
A1 F5 I101 R1 9 0 35.7 1324966 97.5% 1291841 124.9
A1 F5 I102 R1 278 0 39.1 2251254 95.8% 2156701 87.1
A2 F5 I172 R1 11 0 31.8 1384100 96.4% 1334272 122.3
A2 F5 I173 R1 12 0 47.0 1909912 97.3% 1858344 123.7
A2 F5 I175 R1 328 0 64.7 2582366 96.2% 2484236 120.9
A2 F5 I176 R1 180 0 42.9 1710034 96.5% 1650182 119.3
A2 F5 I177 R1 141 0 27.5 996908 97.7% 973979 124.3
A2 F5 I178 R1 167 0 28.0 1137820 95.3% 1084342 115.1
A2 F5 I179 R1 182 0 40.3 1547118 96.8% 1497610 120.0
A2 F5 I180 R1 11 0 34.0 1288296 97.3% 1253512 124.3
A2 F5 I181 R1 159 0 32.7 1279082 96.9% 1239430 121.0
A2 F5 I182 R1 11 0 14.9 566228 97.7% 553204 130.2
A2 F5 I183 R1 13 0 29.9 1231064 96.9% 1192901 122.3
A2 F5 I184 R1 278 0 29.6 1166432 97.3% 1134938 124.1

Mutation Needle Plot

Mutation Targets

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