breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 310 | (T)9→8 | intergenic (+55/‑27) | thrL → / → thrA | thr operon leader peptide/bifunctional aspartate kinase/homoserine dehydrogenase I |
RA | 21,250 | T→C | S24P (TCC→CCC) | yaaY → | DUF2575 family protein |
RA | 49,769 | G→A | intergenic (+138/‑54) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
RA | 49,898 | G→A | A26T (GCC→ACC) | folA → | type 3 dihydrofolate reductase |
RA | 49,910 | T→G | W30G (TGG→GGG) | folA → | type 3 dihydrofolate reductase |
RA | 60,340 | T→C | M3V (ATG→GTG) | rluA ← | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA |
RA | 75,986 | T→C | T456A (ACC→GCC) | leuC ← | 3‑isopropylmalate dehydratase large subunit |
RA | 120,914 | A→C | T471P (ACC→CCC) | aceE → | pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
RA | 130,120 | T→C | D673D (GAT→GAC) | acnB → | bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase |
RA | 168,561 | A→G | T205A (ACG→GCG) | fhuB → | Fe(3+)‑hydroxamate ABC transporter permease FhuB |
RA | 196,898 | T→A | intergenic (+51/‑71) | bamA → / → skp | outer membrane protein assembly factor BamA/molecular chaperone Skp |
RA | 204,632 | T→C | V1007A (GTC→GCC) | dnaE → | DNA polymerase III subunit alpha |
RA | 209,618 | A→C | A267A (GCA→GCC) | tilS → | tRNA lysidine(34) synthetase TilS |
RA | 225,426 | T→C | noncoding (12/77 nt) | BW25113_RS01035 → | tRNA‑Asp |
RA | 232,843 | T→C | I97T (ATC→ACC) | dnaQ → | DNA polymerase III subunit epsilon |
RA | 243,919 | A→T | R241W (AGG→TGG) | yafL → | C40 family peptidase |
RA | 250,930 | A→G | I425T (ATC→ACC) | pepD ← | cytosol nonspecific dipeptidase |
RA | 251,113 | A→G | I364T (ATC→ACC) | pepD ← | cytosol nonspecific dipeptidase |
RA | 253,379 | T→C | G122G (GGT→GGC) | frsA → | esterase FrsA |
RA | 276,021 | A→G | pseudogene (53/249 nt) | BW25113_RS01360 ← | transposase |
RA | 290,020 | T→C | E164G (GAA→GGA) | BW25113_RS01425 ← | hypothetical protein |
RA | 361,532 | A→C | L71R (CTG→CGG) | lacI ← | DNA‑binding transcriptional repressor LacI |
RA | 386,451 | T→C | pseudogene (745/1527 nt) | BW25113_RS01915 → | outer membrane autotransporter barrel domain‑containing protein |
RA | 453,695 | G→A | A272T (GCG→ACG) | clpX → | ATP‑dependent protease ATP‑binding subunit ClpX |
RA | 453,912 | A→G | E344G (GAA→GGA) | clpX → | ATP‑dependent protease ATP‑binding subunit ClpX |
RA | 465,858 | T→C | I511T (ATC→ACC) | mdlA → | SmdA family multidrug ABC transporter permease/ATP‑binding protein |
RA | 469,392 | T→C | L324P (CTC→CCC) | amtB → | ammonium transporter AmtB |
RA | 475,405 | Δ1 bp | intergenic (‑31/+141) | maa ← / ← hha | maltose O‑acetyltransferase/HHA domain‑containing protein |
RA | 481,730 | Δ1 bp | coding (514/648 nt) | acrR → | multidrug efflux transporter transcriptional repressor AcrR |
RA | 485,143 | A→G | D1051G (GAT→GGT) | mscK → | mechanosensitive channel MscK |
RA | 487,218 | A→C | K117N (AAA→AAC) | apt → | adenine phosphoribosyltransferase |
RA | 509,698 | A→C | T84P (ACG→CCG) | cueR → | Cu(I)‑responsive transcriptional regulator |
RA | 524,350 | T→C | F85F (TTT→TTC) | BW25113_RS24960 → | hypothetical protein |
RA | 552,665 | T→C | E178G (GAA→GGA) | folD ← | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD |
RA | 574,600 | A→C | intergenic (‑251/+40) | bor ← / ← ybcV | serum resistance lipoprotein Bor/DUF1398 domain‑containing protein |
RA | 587,628 | A→G | F336S (TTC→TCC) | nrfB ← | cyclic di‑3',5'‑guanylate‑activated glycosyltransferase NrfB |
RA | 592,602 | C→T | Q6* (CAA→TAA) | cusF → | Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF |
RA | 634,477 | A→G | E26G (GAA→GGA) | ahpC → | alkyl hydroperoxide reductase subunit C |
RA | 635,449 | T→C | S81P (TCC→CCC) | ahpF → | alkyl hydroperoxide reductase subunit F |
RA | 668,149 | A→G | N697N (AAT→AAC) | leuS ← | leucine‑‑tRNA ligase |
RA | 675,373 | A→G | E137G (GAA→GGA) | ybeU → | DUF1266 domain‑containing protein |
RA | 678,913 | A→G | intergenic (‑64/+20) | hscC ← / ← rihA | molecular chaperone HscC/pyrimidine‑specific ribonucleoside hydrolase RihA |
RA | 687,482 | C→T | A106T (GCG→ACG) | ybeY ← | rRNA maturation RNase YbeY |
RA | 715,111 | A→G | I269T (ATC→ACC) | speF ← | ornithine decarboxylase SpeF |
RA | 716,126 | A→G | intergenic (‑210/+48) | speF ← / ← BW25113_RS26090 | ornithine decarboxylase SpeF/leader peptide SpeFL |
RA | 728,467 | T→C | I1143I (ATT→ATC) | rhsC → | rhs element protein RhsC |
RA | 736,034 | A→T | I358F (ATC→TTC) | phrB → | deoxyribodipyrimidine photo‑lyase |
RA | 737,899 | A→G | N38N (AAT→AAC) | dtpD ← | dipeptide permease DtpD |
RA | 747,264 | T→C | D124G (GAT→GGT) | ybgQ ← | fimbrial biogenesis outer membrane usher protein |
RA | 757,924 | T→C | L316P (CTG→CCG) | odhB → | 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase |
RA | 771,797 | A→G | intergenic (+64/‑1) | tolR → / → tolA | colicin uptake protein TolR/cell envelope integrity protein TolA |
RA | 781,531 | T→C | I148T (ATC→ACC) | aroG → | 3‑deoxy‑7‑phosphoheptulonate synthase AroG |
RA | 800,612 | A→C | T552P (ACC→CCC) | ybhJ → | hydratase |
RA | 832,557 | T→C | S251P (TCC→CCC) | hcxB → | hydroxycarboxylate dehydrogenase HcXB |
RA | 834,220 | A→G | D148D (GAT→GAC) | ybiX ← | PKHD‑type hydroxylase YbiX |
RA | 857,539 | T→C | E175G (GAA→GGA) | ybiW ← | glycyl radical protein |
RA | 858,772 | T→C | I66V (ATT→GTT) | ybiY ← | glycyl‑radical enzyme activating protein |
RA | 861,316 | T→C | I169V (ATT→GTT) | moeA ← | molybdopterin molybdotransferase MoeA |
RA | 870,468 | A→G | Q678Q (CAA→CAG) | pdeI → | EAL domain‑containing protein |
RA | 885,786 | T→G | L81R (CTG→CGG) | ybjM → | inner membrane protein YbjM |
RA | 900,176 | T→G | V43G (GTT→GGT) | ybjQ → | heavy metal‑binding domain‑containing protein |
RA | 923,801 | A→G | V284A (GTC→GCC) | cydC ← | cysteine/glutathione ABC transporter ATP‑binding protein/permease CydC |
RA | 928,200 | T→C | R50R (CGT→CGC) | lrp → | leucine‑responsive transcriptional regulator Lrp |
RA | 945,384 | (T)5→4 | coding (261/591 nt) | ycaK → | NAD(P)H oxidoreductase |
RA | 960,653 | T→C | M293T (ATG→ACG) | ycaI → | ComEC family protein |
RA | 965,365 | T→C | M174T (ATG→ACG) | ycaQ → | winged helix DNA‑binding protein YcaQ |
RA | 974,173 | T→C | S798P (TCC→CCC) | mukB → | chromosome partition protein MukB |
RA | 1,056,058 | T→C | I449I (ATT→ATC) | torA → | trimethylamine‑N‑oxide reductase TorA |
RA | 1,068,442 | A→C | G323G (GGT→GGG) | rutA ← | pyrimidine utilization protein A |
RA | 1,079,189 | T→C | S120P (TCC→CCC) | efeB → | iron uptake transporter deferrochelatase/peroxidase subunit |
RA | 1,097,764 | A→G | N78N (AAT→AAC) | csgE ← | curli production assembly/transport protein CsgE |
RA | 1,124,635 | T→C | R447R (CGT→CGC) | murJ → | murein biosynthesis integral membrane protein MurJ |
RA | 1,136,234 | A→G | E249G (GAA→GGA) | flgL → | flagellar hook‑associated protein FlgL |
RA | 1,149,506 | T→C | S251P (TCC→CCC) | pabC → | aminodeoxychorismate lyase |
RA | 1,161,212 | T→C | intergenic (+71/‑329) | ycfP → / → ndh | alpha/beta hydrolase YcfP/NADH‑quinone dehydrogenase |
RA | 1,182,954 | T→A | D248V (GAT→GTT) | roxA ← | [50S ribosomal protein L16]‑arginine 3‑hydroxylase |
RA | 1,187,888 | T→C | E67G (GAA→GGA) | hflD ← | high frequency lysogenization protein HflD |
RA | 1,200,135 | (A)5→4 | pseudogene (279/1137 nt) | BW25113_RS05965 → | terminase large subunit |
RA | 1,201,626 | A→G | pseudogene (34/786 nt) | BW25113_RS05980 → | baseplate J/gp47 family protein |
RA | 1,220,495 | T→A | D108V (GAT→GTT) | minD ← | septum site‑determining protein MinD |
RA | 1,223,250 | T→C | V27V (GTT→GTC) | BW25113_RS06140 → | YcgL domain‑containing protein |
RA | 1,231,152 | T→G | intergenic (+39/+13) | fadR → / ← ycgB | fatty acid metabolism transcriptional regulator FadR/SpoVR family protein |
RA | 1,235,908 | T→G | A540A (GCA→GCC) | cvrA ← | potassium/proton antiporter |
RA | 1,237,258 | T→C | G90G (GGA→GGG) | cvrA ← | potassium/proton antiporter |
RA | 1,246,085 | (C)5→4 | coding (210/1071 nt) | dhaK ← | dihydroxyacetone kinase subunit DhaK |
RA | 1,246,553 | Δ1 bp | coding (32/1920 nt) | dhaR → | dihydroxyacetone kinase operon transcriptional regulator DhaR |
RA | 1,260,284 | A→G | D372G (GAC→GGC) | hemA → | glutamyl‑tRNA reductase |
RA | 1,283,900 | A→G | S61P (TCC→CCC) | purU ← | formyltetrahydrofolate deformylase |
RA | 1,306,087 | A→G | intergenic (+22/+18) | tonB → / ← yciA | TonB system transport protein TonB/acyl‑CoA thioester hydrolase YciA |
RA | 1,336,067 | G→A | intergenic (+83/‑111) | lapB → / → pyrF | lipopolysaccharide assembly protein LapB/orotidine‑5'‑phosphate decarboxylase |
RA | 1,337,867 | A→C | V246G (GTC→GGC) | yciT ← | DNA‑binding transcriptional regulator YciT |
RA | 1,399,853 | A→G | T286A (ACC→GCC) | abgR → | LysR family transcriptional regulator |
RA | 1,401,542 | T→C | M171V (ATG→GTG) | dgcM ← | diguanylate cyclase DgcM |
RA | 1,449,980 | A→G | D187G (GAT→GGT) | paaC → | phenylacetate‑CoA oxygenase subunit PaaC |
RA | 1,455,278 | T→G | R43R (CGT→CGG) | paaJ → | bifunctional 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
RA | 1,461,422 | (G)5→4 | pseudogene (1774/2526 nt) | BW25113_RS07350 → | autotransporter domain‑containing protein |
RA | 1,492,661 | A→G | M517V (ATG→GTG) | opgD → | glucan biosynthesis protein OpgD |
RA | 1,506,028 | G→A | A40T (GCC→ACC) | ydcS → | ABC transporter substrate‑binding protein |
RA | 1,542,720 | A→G | T355A (ACT→GCT) | fdnG → | formate dehydrogenase‑N subunit alpha |
RA | 1,564,882 | A→C | intergenic (‑136/+20) | gadC ← / ← gadB | acid resistance gamma‑aminobutyrate antiporter GadC/glutamate decarboxylase |
RA | 1,575,730 | T→C | D351G (GAT→GGT) | ydeN ← | sulfatase |
RA | 1,578,188 | A→G | I10T (ATC→ACC) | safA ← | two‑component system connector SafA |
RA | 1,578,845 | A→G | D633D (GAT→GAC) | ydeP ← | acid resistance putative oxidoreductase YdeP |
RA | 1,580,214 | T→C | D177G (GAC→GGC) | ydeP ← | acid resistance putative oxidoreductase YdeP |
RA | 1,594,535 | T→C | intergenic (‑69/+10) | lsrK ← / ← lsrR | autoinducer‑2 kinase/transcriptional regulator LsrR |
RA | 1,597,498 | G→T | A75S (GCG→TCG) | lsrC → | autoinducer 2 ABC transporter permease LsrC |
RA | 1,599,483 | A→C | D59A (GAT→GCT) | lsrB → | autoinducer 2 ABC transporter substrate‑binding protein LsrB |
RA | 1,610,406 | T→C | A129A (GCT→GCC) | yneK → | putative protein YneK |
RA | 1,613,590 | A→C | T72P (ACC→CCC) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
RA | 1,622,039 | A→G | E89G (GAG→GGG) | ydfG → | bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/3‑hydroxypropionate dehydrogenase YdfG |
RA | 1,654,400 | T→C | F692S (TTC→TCC) | ynfE → | dimethyl sulfoxide reductase subunit A |
RA | 1,659,452 | (T)7→6 | intergenic (+75/‑84) | dmsD → / → clcB | Tat proofreading chaperone DmsD/voltage‑gated ClC‑type chloride channel ClcB |
RA | 1,701,793 | A→C | P206P (CCA→CCC) | rsxC → | electron transport complex subunit RsxC |
RA | 1,707,599 | A→T | I192F (ATC→TTC) | dtpA → | dipeptide/tripeptide permease DtpA |
RA | 1,708,538 | A→G | intergenic (+10/‑96) | dtpA → / → gstA | dipeptide/tripeptide permease DtpA/glutathione transferase GstA |
RA | 1,712,188 | T→C | D26G (GAT→GGT) | pdxH ← | pyridoxamine 5'‑phosphate oxidase |
RA | 1,712,684 | T→C | intergenic (‑32/+66) | mliC ← / ← anmK | C‑type lysozyme inhibitor/anhydro‑N‑acetylmuramic acid kinase |
RA | 1,713,741 | A→G | I40T (ATC→ACC) | anmK ← | anhydro‑N‑acetylmuramic acid kinase |
RA | 1,718,241 | Δ1 bp | coding (1864/2013 nt) | ydhK → | FUSC family protein |
RA | 1,732,351 | (A)7→6 | coding (251/1026 nt) | purR → | HTH‑type transcriptional repressor PurR |
RA | 1,737,390 | T→C | E37G (GAA→GGA) | ribE ← | riboflavin synthase |
RA | 1,765,154 | A→G | N95D (AAT→GAT) | ydiL → | YdiL family protein |
RA | 1,769,436 | A→G | D165G (GAC→GGC) | aroD → | type I 3‑dehydroquinate dehydratase |
RA | 1,776,037 | T→G | V129G (GTT→GGT) | ydiS → | FAD‑dependent oxidoreductase |
RA | 1,776,541 | T→G | V297G (GTG→GGG) | ydiS → | FAD‑dependent oxidoreductase |
RA | 1,809,188 | T→C | D355D (GAT→GAC) | katE → | catalase HPII |
RA | 1,809,395 | T→G | G424G (GGT→GGG) | katE → | catalase HPII |
RA | 1,809,612 | C→T | R497C (CGC→TGC) | katE → | catalase HPII |
RA | 1,810,989 | A→G | F135S (TTC→TCC) | chbG ← | chitin disaccharide deacetylase |
RA | 1,817,851 | T→C | F27S (TTC→TCC) | cho → | excinuclease Cho |
RA | 1,834,793 | A→G | D357G (GAT→GGT) | ynjE → | thiosulfate sulfurtransferase YnjE |
RA | 1,856,434 | A→G | S85P (TCA→CCA) | msrB ← | peptide‑methionine (R)‑S‑oxide reductase MsrB |
RA | 1,868,665 | T→C | S19S (AGT→AGC) | yeaL → | DUF441 domain‑containing protein |
RA | 1,879,784 | T→G | V288G (GTG→GGG) | yeaW → | carnitine monooxygenase subunit YeaW |
RA | 1,891,886 | Δ1 bp | coding (698/1365 nt) | sdaA → | L‑serine ammonia‑lyase |
RA | 1,900,350 | A→G | T136A (ACC→GCC) | mntP → | manganese efflux pump MntP |
RA | 1,932,990 | A→G | E362G (GAA→GGA) | pyk → | pyruvate kinase |
RA | 1,941,091 | A→G | E195G (GAA→GGA) | yebB → | YebB family permuted papain‑like enzyme |
RA | 1,955,016 | A→G | D233G (GAC→GGC) | argS → | arginine‑‑tRNA ligase |
RA | 1,964,793 | G→A | A150V (GCG→GTG) | tap ← | methyl‑accepting chemotaxis protein IV |
RA | 2,000,880 | A→G | D415G (GAC→GGC) | amyA → | alpha‑amylase |
RA | 2,014,103 | A→C | Y179S (TAC→TCC) | fliM → | flagellar motor switch protein FliM |
RA | 2,030,709 | A→G | S309P (TCG→CCG) | hprS ← | two‑component system sensor histidine kinase HprS |
RA | 2,037,050 | T→G | intergenic (‑12/‑82) | BW25113_RS10320 ← / → mtfA | tRNA‑Ser/DgsA anti‑repressor MtfA |
RA | 2,039,724 | A→G | T436A (ACA→GCA) | yeeJ → | inverse autotransporter adhesin YeeJ |
RA | 2,066,165 | A→G | G382G (GGA→GGG) | agn43 → | autotransporter adhesin Ag43 |
RA | 2,069,946 | A→G | Y53C (TAT→TGT) | yeeS → | RadC family protein |
RA | 2,088,811 | T→C | V69A (GTC→GCC) | hisA → | 1‑(5‑phosphoribosyl)‑5‑[(5‑ phosphoribosylamino)methylideneamino]imidazole‑4‑ carboxamide isomerase |
RA | 2,093,562 | A→G | I396I (ATT→ATC) | gndA ← | NADP‑dependent phosphogluconate dehydrogenase |
RA | 2,135,155 | T→C | N181S (AAC→AGC) | dcd ← | dCTP deaminase |
RA | 2,136,211 | A→G | D73D (GAT→GAC) | udk ← | uridine kinase |
RA | 2,179,484 | A→G | E30G (GAA→GGA) | rcnA → | nickel/cobalt efflux protein RcnA |
RA | 2,196,972 | A→C | H1072P (CAC→CCC) | BW25113_RS11045 → | DUF4132 domain‑containing protein |
RA | 2,258,402 | T→A | I354N (ATC→AAC) | setB → | sugar efflux transporter SetB |
RA | 2,268,854 | A→G | S35G (AGT→GGT) | yejE → | ABC transporter permease |
RA | 2,287,796 | C→T | L196L (CTG→CTA) | ccmF ← | cytochrome c‑type biogenesis heme lyase CcmF |
RA | 2,303,411 | T→C | G158G (GGA→GGG) | ada ← | bifunctional DNA‑binding transcriptional regulator/O6‑methylguanine‑DNA methyltransferase Ada |
RA | 2,347,385 | T→G | P420P (CCT→CCG) | glpA → | anaerobic glycerol‑3‑phosphate dehydrogenase subunit A |
RA | 2,357,677 | A→G | G26G (GGT→GGC) | yfaZ ← | YfaZ family protein |
RA | 2,370,881 | A→G | V64A (GTC→GCC) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
RA | 2,406,008 | A→G | D22D (GAT→GAC) | yfbU ← | YfbU family protein |
RA | 2,437,066 | T→C | D608D (GAT→GAC) | mnmC → | bifunctional tRNA (5‑methylaminomethyl‑2‑thiouridine)(34)‑methyltransferase MnmD/FAD‑dependent 5‑carboxymethylaminomethyl‑2‑thiouridine(34) oxidoreductase MnmC |
RA | 2,438,026 | T→C | K69E (AAA→GAA) | epmC ← | elongation factor P hydroxylase |
RA | 2,438,552 | Δ1 bp | coding (488/810 nt) | yfcA ← | sulfite exporter TauE/SafE family protein |
RA | 2,503,481 | A→G | T125A (ACC→GCC) | yfeO → | ion channel protein |
RA | 2,521,647 | C→T | G630D (GGC→GAC) | ligA ← | NAD‑dependent DNA ligase LigA |
RA | 2,550,584 | A→G | S25P (TCA→CCA) | eutC ← | ethanolamine ammonia‑lyase subunit beta |
RA | 2,581,070 | G→A | A39A (GCG→GCA) | acrD → | multidrug efflux RND transporter permease AcrD |
RA | 2,581,941 | A→T | T330S (ACC→TCC) | acrD → | multidrug efflux RND transporter permease AcrD |
RA | 2,637,057 | G→A | L196F (CTT→TTT) | rlmN ← | bifunctional tRNA (adenosine(37)‑C2)‑methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN |
RA | 2,644,099 | T→G | A516A (GCA→GCC) | yfhM ← | alpha2‑macroglobulin |
RA | 2,646,214 | (G)6→7 | coding (362/846 nt) | sseA → | 3‑mercaptopyruvate sulfurtransferase |
RA | 2,664,311 | T→G | G15G (GGT→GGG) | hcaC → | bifunctional 3‑phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit |
RA | 2,666,371 | T→A | D322E (GAT→GAA) | hcaD → | phenylpropionate dioxygenase ferredoxin reductase subunit |
RA | 2,673,427 | T→G | N893T (AAC→ACC) | yphG ← | DUF5107 domain‑containing protein |
RA | 2,682,977 | T→C | intergenic (‑112/+53) | qseG ← / ← qseE | two‑component system QseEF‑associated lipoprotein QseG/two component system sensor histidine kinase QseE/GlrK |
RA | 2,684,806 | T→C | intergenic (‑349/+209) | qseE ← / ← purL | two component system sensor histidine kinase QseE/GlrK/phosphoribosylformylglycinamidine synthase |
RA | 2,713,437 | A→G | G42G (GGA→GGG) | pat → | protein lysine acetyltransferase |
RA | 2,745,770 | A→G | E206G (GAG→GGG) | recN → | DNA repair protein RecN |
RA | 2,771,232 | (A)6→5 | intergenic (+91/+273) | ypjF → / ← ypjA | type IV toxin‑antitoxin system toxin YpjF/adhesin‑like autotransporter YpjA/EhaD |
RA | 2,772,143 | A→G | S1315P (TCC→CCC) | ypjA ← | adhesin‑like autotransporter YpjA/EhaD |
RA | 2,808,251 | T→G | K516N (AAA→AAC) | gshA ← | glutamate‑‑cysteine ligase |
RA | 2,829,895 | A→G | V297A (GTC→GCC) | hypF ← | carbamoyltransferase HypF |
RA | 2,862,125 | A→G | intergenic (‑13/+127) | nlpD ← / ← pcm | murein hydrolase activator NlpD/protein‑L‑isoaspartate O‑methyltransferase |
RA | 2,885,672 | T→C | S33P (TCC→CCC) | queD → | 6‑carboxytetrahydropterin synthase QueD |
RA | 2,891,751 | T→G | T343P (ACC→CCC) | ygcU ← | FAD‑binding oxidoreductase |
RA | 2,892,532 | A→C | G82G (GGT→GGG) | ygcU ← | FAD‑binding oxidoreductase |
RA | 2,897,765 | A→T | intergenic (+1032/+341) | ygcE → / ← queE | FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE |
RA | 2,931,836 | A→G | D337G (GAT→GGT) | fucK → | L‑fuculokinase |
RA | 2,959,152 | A→G | F82S (TTC→TCC) | lgt ← | prolipoprotein diacylglyceryl transferase |
RA | 2,987,561 | (A)7→6 | coding (264/477 nt) | BW25113_RS14845 → | lytic transglycosylase domain‑containing protein |
RA | 3,036,314 | A→G | F65S (TTC→TCC) | yqfA ← | hemolysin III family protein |
RA | 3,071,778 | A→C | G147G (GGT→GGG) | cmtA ← | PTS mannitol transporter subunit IICB |
RA | 3,148,355 | A→G | S56P (TCC→CCC) | yqhC ← | DNA‑binding transcriptional regulator YqhC |
RA | 3,155,922 | A→G | V36A (GTT→GCT) | ftsP ← | cell division protein FtsP |
RA | 3,186,043 | A→G | G159G (GGA→GGG) | yqiJ → | DUF1449 family protein |
RA | 3,193,900 | A→G | L142P (CTC→CCC) | ygiF ← | inorganic triphosphatase |
RA | 3,202,275 | T→G | V298G (GTG→GGG) | ttdT → | L‑tartrate/succinate antiporter |
RA | 3,210,830 | A→C | intergenic (+69/+85) | nfeR → / ← aer | DNA‑binding transcriptional regulator NfeR/aerotaxis sensor receptor Aer |
RA | 3,232,610 | T→C | I224I (ATT→ATC) | alx → | TerC family membrane protein Alx |
RA | 3,292,953 | +C | coding (322/444 nt) | yhbP ← | YhbP family protein |
RA | 3,303,545 | T→C | D328G (GAT→GGT) | pnp ← | polyribonucleotide nucleotidyltransferase |
RA | 3,315,373 | T→C | intergenic (‑401/+58) | yhbX ← / ← BW25113_RS16455 | phosphoethanolamine transferase/tRNA‑Leu |
RA | 3,326,882 | A→G | intergenic (‑72/‑187) | rplU ← / → ispB | 50S ribosomal protein L21/octaprenyl diphosphate synthase |
RA | 3,349,491 | T→C | S470P (TCC→CCC) | gltB → | glutamate synthase large subunit |
RA | 3,437,182 | A→G | I92T (ATC→ACC) | secY ← | preprotein translocase subunit SecY |
RA | 3,446,256 | A→C | G10G (GGT→GGG) | rplC ← | 50S ribosomal protein L3 |
RA | 3,479,155 | A→G | V8A (GTC→GCC) | yhfA ← | OsmC family protein |
RA | 3,511,244 | T→C | E201G (GAA→GGA) | aroB ← | 3‑dehydroquinate synthase |
RA | 3,516,705 | T→C | I159T (ATC→ACC) | mrcA → | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA |
RA | 3,526,544 | C→T | A123V (GCT→GTT) | pckA → | phosphoenolpyruvate carboxykinase (ATP) |
RA | 3,589,221 | A→G | G181G (GGT→GGC) | livH ← | high‑affinity branched‑chain amino acid ABC transporter permease LivH |
RA | 3,593,877 | T→C | A89A (GCA→GCG) | rpoH ← | RNA polymerase sigma factor RpoH |
RA | 3,666,352 | A→T | T193T (ACA→ACT) | rcdB → | LysR family transcriptional regulator |
RA | 3,836,431 | A→G | V240A (GTC→GCC) | adeQ ← | adenine permease AdeQ |
RA | 3,841,593 | A→G | F131S (TTC→TCC) | uhpC ← | MFS transporter family glucose‑6‑phosphate receptor UhpC |
RA | 3,853,103 | A→G | F125S (TTC→TCC) | yidK ← | solute:sodium symporter family transporter |
RA | 3,866,099 | T→C | D87G (GAC→GGC) | dgoD ← | galactonate dehydratase |
RA | 3,873,583 | A→G | S333S (AGT→AGC) | recF ← | DNA replication/repair protein RecF |
RA | 3,882,139 | A→G | E17G (GAG→GGG) | tnaA → | tryptophanase |
RA | 3,885,585 | T→C | F204S (TTC→TCC) | mdtL → | multidrug efflux MFS transporter MdtL |
RA | 3,896,219 | A→G | T281T (ACT→ACC) | bglB ← | 6‑phospho‑beta‑glucosidase BglB |
RA | 3,963,488 | T→C | intergenic (+51/‑5) | wzzE → / → wecB | ECA polysaccharide chain length modulation protein/UDP‑N‑acetylglucosamine 2‑epimerase (non‑hydrolyzing) |
RA | 3,965,761 | A→G | D381G (GAC→GGC) | wecC → | UDP‑N‑acetyl‑D‑mannosamine dehydrogenase |
RA | 4,003,978 | A→G | E140G (GAG→GGG) | yigL → | sugar/pyridoxal phosphate phosphatase YigL |
RA | 4,030,529 | Δ1 bp | noncoding (29/77 nt) | BW25113_RS19985 → | tRNA‑Ile |
RA | 4,052,334 | A→G | I190V (ATT→GTT) | typA → | ribosome‑dependent GTPase TypA |
RA | 4,064,260 | A→C | V286G (GTG→GGG) | yihS ← | sulfoquinovose isomerase |
RA | 4,132,297 | T→C | intergenic (‑148/‑161) | ptsP ← / → frwC | phosphoenolpyruvate‑‑protein phosphotransferase/PTS fructose transporter subunit EIIC |
RA | 4,172,602 | A→C | E477A (GAG→GCG) | rpoB → | DNA‑directed RNA polymerase subunit beta |
RA | 4,223,121 | A→G | V14A (GTA→GCA) | lysC ← | lysine‑sensitive aspartokinase 3 |
RA | 4,228,785 | T→C | V408V (GTT→GTC) | yjbH → | YjbH domain‑containing protein |
RA | 4,235,276 | T→C | N358D (AAC→GAC) | malE ← | maltose/maltodextrin ABC transporter substrate‑binding protein MalE |
RA | 4,239,048 | T→C | S384P (TCA→CCA) | lamB → | maltoporin LamB |
RA | 4,251,021 | A→G | pseudogene (773/986 nt) | BW25113_RS21020 → | DUF2713 domain‑containing protein |
RA | 4,251,134 | T→C | pseudogene (886/986 nt) | BW25113_RS21020 → | DUF2713 domain‑containing protein |
RA | 4,262,930 | A→T | D290E (GAT→GAA) | uvrA ← | excinuclease ABC subunit UvrA |
RA | 4,262,978 | (C)5→4 | coding (822/2823 nt) | uvrA ← | excinuclease ABC subunit UvrA |
RA | 4,264,031 | A→T | intergenic (‑232/‑22) | uvrA ← / → ssb1 | excinuclease ABC subunit UvrA/single‑stranded DNA‑binding protein SSB1 |
RA | 4,272,141 | T→C | D288G (GAT→GGT) | espX5 ← | T3SS effector pentapeptide repeat protein EspX5 |
RA | 4,309,246 | T→C | I60V (ATT→GTT) | phnJ ← | alpha‑D‑ribose 1‑methylphosphonate 5‑phosphate C‑P‑lyase PhnJ |
RA | 4,321,803 | T→C | H495H (CAT→CAC) | proP → | glycine betaine/L‑proline transporter ProP |
RA | 4,350,177 | A→G | intergenic (‑329/+36) | cadB ← / ← cadC | cadaverine/lysine antiporter/lysine decarboxylation/transport transcriptional activator CadC |
RA | 4,351,265 | (A)8→7 | coding (487/1539 nt) | cadC ← | lysine decarboxylation/transport transcriptional activator CadC |
RA | 4,359,587 | G→T | R215S (CGT→AGT) | yjeH ← | L‑methionine/branched‑chain amino acid transporter |
RA | 4,371,321 | T→C | E272G (GAA→GGA) | frdA ← | fumarate reductase (quinol) flavoprotein subunit |
RA | 4,374,268 | T→C | S205P (TCC→CCC) | yjeM → | glutamate/gamma‑aminobutyrate family transporter YjeM |
RA | 4,377,323 | T→C | D622G (GAC→GGC) | mscM ← | miniconductance mechanosensitive channel MscM |
RA | 4,378,349 | T→C | D280G (GAT→GGT) | mscM ← | miniconductance mechanosensitive channel MscM |
RA | 4,395,911 | T→C | intergenic (+109/‑96) | purA → / → nsrR | adenylosuccinate synthase/nitric oxide‑sensing transcriptional repressor NsrR |
RA | 4,409,650 | T→C | intergenic (‑208/‑147) | ulaG ← / → ulaA | L‑ascorbate 6‑phosphate lactonase/PTS ascorbate transporter subunit IIC |
RA | 4,415,310 | G→A | A126T (GCT→ACT) | rpsF → | 30S ribosomal protein S6 |
RA | 4,428,964 | T→C | E39G (GAG→GGG) | ytfJ ← | YtfJ family protein |
RA | 4,449,957 | A→G | D75D (GAT→GAC) | nrdG ← | anaerobic ribonucleoside‑triphosphate reductase‑activating protein |
RA | 4,466,373 | T→A | S374T (TCC→ACC) | BW25113_RS22080 → | hypothetical protein |
RA | 4,493,312 | A→G | intergenic (‑46/‑563) | insG ← / → nanX | IS4‑like element IS4 family transposase/MFS transporter |
RA | 4,501,175 | T→C | I34V (ATC→GTC) | fecE ← | Fe(3+) dicitrate ABC transporter ATP‑binding protein FecE |
RA | 4,545,596 | T→C | E181G (GAG→GGG) | yjiC ← | YjfZ/YjiC family protein |
RA | 4,556,234 | T→C | E277G (GAA→GGA) | yjiN ← | DUF445 domain‑containing protein |
RA | 4,568,721 | A→G | I145T (ATC→ACC) | mcrB ← | 5‑methylcytosine‑specific restriction endonuclease subunit McrB |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 356948 | 357581 | 634 | 7 [5] | [5] 6 | lacA | lacA |
* | * | ÷ | NZ_CP009273 | 1864550 | 1864595 | 46 | 6 [5] | [4] 6 | yeaH/cdgI | YeaH/YhbH family protein/GGDEF domain‑containing protein |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 360104 = | 35 (0.810) | 54 (1.250) | 35/242 | 0.2 | 60.7% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | 1203246 = | 9 (0.210) | 39 (1.040) | 30/210 | 0.2 | 86.9% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
? | NZ_CP009273 | 1205075 = | 4 (0.110) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
* | ? | NZ_CP009273 | = 1203261 | 9 (0.210) | 27 (0.720) | 18/210 | 0.7 | 82.1% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
? | NZ_CP009273 | = 1205058 | 4 (0.110) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein |