mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 69 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 147,040 | 0 | A | C | 74.4% | 76.6 / 33.2 | 43 | V134G (GTC→GGC) | yadC | fimbrial tip‑adhesin YadC |
| * | NZ_CP009273 | 3,722,012 | 0 | A | C | 74.3% | 63.5 / 20.8 | 35 | G240G (GGT→GGG) | xylB | xylulokinase |
| * | NZ_CP009273 | 1,875,427 | 0 | G | . | 73.5% | 62.7 / 37.1 | 34 | coding (640/924 nt) | dmlR | DNA‑binding transcriptional regulator DmlR |
| * | NZ_CP009273 | 1,292,017 | 0 | T | C | 73.2% | 51.4 / 33.1 | 41 | T521A (ACC→GCC) | adhE | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
| * | NZ_CP009273 | 728,670 | 0 | A | C | 73.0% | 46.3 / 28.7 | 37 | D1211A (GAC→GCC) | rhsC | rhs element protein RhsC |
| * | NZ_CP009273 | 97,986 | 0 | T | C | 72.5% | 70.4 / 43.0 | 51 | R245R (CGT→CGC) | murC | UDP‑N‑acetylmuramate‑‑L‑alanine ligase |
| * | NZ_CP009273 | 322,719 | 0 | T | C | 72.0% | 66.7 / 40.1 | 50 | G80G (GGA→GGG) | betA | choline dehydrogenase |
| * | NZ_CP009273 | 796,995 | 0 | G | . | 71.4% | 73.6 / 52.8 | 42 | coding (781/1053 nt) | ybhH | 4‑oxalomesaconate tautomerase |
| * | NZ_CP009273 | 755,438 | 0 | A | G | 70.8% | 59.7 / 39.3 | 49 | D426G (GAT→GGT) | sucA | 2‑oxoglutarate dehydrogenase E1 component |
| * | NZ_CP009273 | 30,531 | 0 | A | C | 69.0% | 98.4 / 53.4 | 58 | N294T (AAC→ACC) | carA | glutamine‑hydrolyzing carbamoyl‑phosphate synthase small subunit |
| * | NZ_CP009273 | 693,542 | 0 | T | G | 67.5% | 45.1 / 41.3 | 40 | A364A (GCA→GCC) | asnB | asparagine synthase B |
| * | NZ_CP009273 | 4,061,180 | 0 | A | C | 67.5% | 49.0 / 41.7 | 40 | V486G (GTT→GGT) | yihQ | sulfoquinovosidase |
| * | NZ_CP009273 | 675,304 | 0 | T | C | 66.7% | 39.2 / 45.8 | 45 | I114T (ATC→ACC) | ybeU | DUF1266 domain‑containing protein |
| * | NZ_CP009273 | 2,389,530 | 0 | T | C | 65.0% | 30.6 / 44.9 | 40 | K134E (AAA→GAA) | nuoI | NADH‑quinone oxidoreductase subunit NuoI |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 58.6% | ‑4.8 / 30.1 | 29 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 57.1% | ‑0.6 / 22.8 | 21 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 54.8% | 8.2 / 46.7 | 42 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 1,074,924 | 0 | A | G | 52.9% | 8.8 / 19.7 | 17 | D55G (GAT→GGT) | putP | sodium/proline symporter PutP |
| * | NZ_CP009273 | 4,527,926 | 0 | A | C | 52.6% | 7.3 / 26.9 | 19 | G219G (GGT→GGG) | nanM | N‑acetylneuraminate epimerase |
| * | NZ_CP009273 | 3,199,794 | 0 | C | T | 50.0% | 11.5 / 24.8 | 32 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2763146 = | 52 (1.200) | 3 (0.080) | 3/222 | 3.4 | 5.9% | coding (85/702 nt) | yfjR | WYL domain‑containing protein |
| ? | NZ_CP009273 | 2763193 = | 48 (1.210) | coding (132/702 nt) | yfjR | WYL domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 284281 = | 40 (0.920) | 3 (0.070) | 3/226 | 3.4 | 7.4% | coding (593/759 nt) | xynR | DNA‑binding transcriptional repressor XynR |
| ? | NZ_CP009273 | 284315 = | 38 (0.940) | coding (559/759 nt) | xynR | DNA‑binding transcriptional repressor XynR | |||||