mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 49,910 | T→G | W30G (TGG→GGG) | folA → | type 3 dihydrofolate reductase |
| RA | 50,279 | T→G | F153V (TTT→GTT) | folA → | type 3 dihydrofolate reductase |
| RA | 59,627 | C→A | intergenic (‑153/+60) | BW25113_RS25400 ← / ← rluA | transposase/bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA |
| RA | 1,314,400 | C→T | A414A (GCG→GCA) | trpD ← | bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD |
| RA | 1,393,311 | A→G | I158T (ATC→ACC) | fnr ← | fumarate/nitrate reduction transcriptional regulator Fnr |
| RA | 1,613,588 | T→C | L71P (CTG→CCG) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 4,062,410 | G→T | P76Q (CCG→CAG) | yihQ ← | sulfoquinovosidase |
| RA | 4,158,126 | T→C | noncoding (1540/1542 nt) | BW25113_RS20590 → | 16S ribosomal RNA |
| RA | 4,210,609 | T→G | T603P (ACG→CCG) | espL4 ← | type III secretion system effector EspL4 |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357569 | 589 | 12 [0] | [2] 6 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 982686 | 982747 | 62 | 4 [2] | [2] 3 | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 78 (2.520) | 102 (3.290) | 47/242 | 0.0 | 56.7% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 10 (0.320) | 20 (0.740) | 16/210 | 0.5 | 67.0% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 11 (0.410) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 10 (0.320) | 14 (0.520) | 13/210 | 0.7 | 58.7% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | = 1205058 | 11 (0.410) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||