mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 48 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,897,051 | 0 | C | A | 58.3% | 5.4 / 16.2 | 12 | intergenic (+318/+1055) | ygcE/queE | FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE |
| * | NZ_CP009273 | 15,410 | 0 | T | G | 57.1% | 7.0 / 17.1 | 14 | intergenic (+112/‑35) | dnaJ/BW25113_RS00080 | molecular chaperone DnaJ/IS4‑like element IS421 family transposase |
| * | NZ_CP009273 | 3,199,794 | 0 | C | T | 55.0% | 5.3 / 24.2 | 20 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NZ_CP009273 | 3,549,566 | 0 | T | C | 54.5% | 9.6 / 27.2 | 23 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NZ_CP009273 | 3,124,799 | 0 | T | C | 53.8% | 9.7 / 17.7 | 13 | pseudogene (969/1065 nt) | yghQ | lipopolysaccharide biosynthesis protein |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 53.6% | 8.8 / 37.0 | 28 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 500,096 | 0 | C | T | 53.3% | 1.8 / 18.7 | 15 | K19K (AAG→AAA) | fsr | fosmidomycin MFS transporter |
| * | NZ_CP009273 | 497,028 | 0 | A | C | 52.9% | 14.4 / 21.6 | 17 | V556G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 497,031 | 0 | A | C | 52.9% | 17.0 / 23.3 | 17 | V555G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 3,737,017 | 0 | A | C | 52.2% | 17.2 / 36.4 | 23 | T309P (ACC→CCC) | yiaK | 3‑dehydro‑L‑gulonate 2‑dehydrogenase |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 51.8% | 7.4 / 36.3 | 27 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 51.6% | 10.6 / 36.2 | 31 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 51.0% | 32.1 / 74.8 | 49 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 3,634,341 | 0 | C | T | 43.9% | 35.8 / 21.4 | 41 | F40F (TTC→TTT) | dtpB | dipeptide/tripeptide permease DtpB |
| * | NZ_CP009273 | 5,159 | 0 | G | A | 42.9% | 26.5 / 11.1 | 28 | intergenic (+139/‑75) | thrC/yaaX | threonine synthase/DUF2502 domain‑containing protein |
| * | NZ_CP009273 | 3,634,359 | 0 | A | G | 42.1% | 52.0 / 13.4 | 38 | G46G (GGA→GGG) | dtpB | dipeptide/tripeptide permease DtpB |
| * | NZ_CP009273 | 3,659,058 | 0 | T | C | 40.6% | 31.0 / 12.2 | 32 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 40.0% | 82.7 / 20.2 | 55 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 1,976,010 | 0 | C | A | 40.0% | 37.4 / 11.5 | 26 | intergenic (‑142/+25) | otsB/araH | trehalose‑phosphatase/arabinose ABC transporter permease AraH |
| * | NZ_CP009273 | 360,759 | 0 | T | G | 38.5% | 117.9 / 18.7 | 66 | T329P (ACC→CCC) | lacI | DNA‑binding transcriptional repressor LacI |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4532507 | 12 (0.390) | 3 (0.100) | 3/224 | 2.5 | 16.6% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 19 (0.660) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | 3642840 = | 39 (1.260) | 3 (0.110) | 3/218 | 2.5 | 8.4% | coding (546/1290 nt) | arsB | arsenite/antimonite:H(+) antiporter ArsB |
| ? | NZ_CP009273 | 3644036 = | 30 (1.080) | intergenic (+14/‑615) | arsC/BW25113_RS18155 | glutaredoxin‑dependent arsenate reductase/hypothetical protein | |||||