mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 49,884 | C→A | P21Q (CCG→CAG) | folA → | type 3 dihydrofolate reductase |
| RA | 49,910 | T→G | W30G (TGG→GGG) | folA → | type 3 dihydrofolate reductase |
| RA | 59,627 | C→A | intergenic (‑153/+60) | BW25113_RS25400 ← / ← rluA | transposase/bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA |
| JC | 1,193,954 | (AATGATGA)6→5 | intergenic (‑261/‑190) | BW25113_RS05920 ← / → lit | hypothetical protein/cell death peptidase Lit |
| RA | 1,314,400 | C→T | A414A (GCG→GCA) | trpD ← | bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD |
| RA | 1,613,378 | T→C | M1A (GTG→GCG) † | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 4,062,410 | G→T | P76Q (CCG→CAG) | yihQ ← | sulfoquinovosidase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357571 | 591 | 12 [0] | [5] 6 | lacA | galactoside O‑acetyltransferase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 269666 = | NA (NA) | 39 (0.800) | 28/246 | 0.4 | 100% | intergenic (+2/+146) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase |
| ? | NZ_CP009273 | = 481436 | 0 (0.000) | coding (220/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR | |||||
| * | ? | NZ_CP009273 | = 287112 | NA (NA) | 29 (0.590) | 24/246 | 0.6 | 96.7% | intergenic (‑55/‑99) | BW25113_RS01405/BW25113_RS01410 | IS1‑like element IS1B family transposase/hypothetical protein |
| ? | NZ_CP009273 | 1972826 = | 1 (0.020) | intergenic (‑372/‑408) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | 360104 = | 99 (2.030) | 144 (2.950) | 62/246 | 0.0 | 59.3% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 481433 = | 2 (0.040) | 42 (0.860) | 26/246 | 0.5 | 95.5% | coding (217/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR |
| ? | NZ_CP009273 | = 571241 | NA (NA) | coding (1041/1068 nt) | BW25113_RS02855 | porin | |||||
| * | ? | NZ_CP009273 | = 1046002 | 36 (0.740) | 33 (0.680) | 27/244 | 0.5 | 61.9% | intergenic (+16/+417) | BW25113_RS05135/cspH | IS1‑like element IS1D family transposase/cold shock‑like protein CspH |
| ? | NZ_CP009273 | 3370649 = | 5 (0.100) | coding (131/639 nt) | sspA | stringent starvation protein A | |||||
| * | ? | NZ_CP009273 | 1203246 = | 7 (0.140) | 29 (0.680) | 28/214 | 0.3 | 79.4% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 9 (0.210) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 7 (0.140) | 26 (0.610) | 18/214 | 0.8 | 77.5% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | = 1205058 | 9 (0.210) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1972833 | 0 (0.000) | 43 (0.880) | 33/246 | 0.3 | 100% | intergenic (‑379/‑401) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 3577555 | NA (NA) | intergenic (+15/‑209) | BW25113_RS17830/BW25113_RS25760 | IS1‑like element IS1A family transposase/hypothetical protein | |||||
| * | ? | NZ_CP009273 | = 3370655 | 5 (0.100) | 71 (1.450) | 47/246 | 0.1 | 93.4% | coding (125/639 nt) | sspA | stringent starvation protein A |
| ? | NZ_CP009273 | 3576788 = | NA (NA) | coding (391/417 nt) | BW25113_RS17825 | YrhA family protein | |||||