mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 73 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,527,926 | 0 | A | C | 52.2% | 43.4 / 76.7 | 46 | G219G (GGT→GGG) | nanM | N‑acetylneuraminate epimerase |
| * | NZ_CP009273 | 4,061,105 | 0 | A | G | 52.0% | 4.7 / 25.9 | 25 | L511P (CTG→CCG) | yihQ | sulfoquinovosidase |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 50.0% | 61.4 / 29.5 | 57 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 3,634,341 | 0 | C | T | 46.2% | 42.5 / 32.0 | 52 | F40F (TTC→TTT) | dtpB | dipeptide/tripeptide permease DtpB |
| * | NZ_CP009273 | 3,571,650 | 0 | A | C | 45.7% | 47.2 / 11.1 | 35 | V146G (GTG→GGG) | gntR | gluconate operon transcriptional repressor GntR |
| * | NZ_CP009273 | 3,941,210 | 0 | C | T | 45.6% | 45.4 / 22.4 | 46 | E40K (GAA→AAA) | hdfR | HTH‑type transcriptional regulator HdfR |
| * | NZ_CP009273 | 3,436,636 | 0 | A | C | 45.6% | 78.5 / 22.5 | 57 | V274G (GTA→GGA) | secY | preprotein translocase subunit SecY |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 43.6% | 42.1 / 25.0 | 39 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 42.9% | 44.9 / 23.6 | 49 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 42.0% | 40.3 / 23.2 | 50 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 3,941,191 | 0 | T | G | 41.3% | 59.5 / 11.4 | 47 | N46T (AAC→ACC) | hdfR | HTH‑type transcriptional regulator HdfR |
| * | NZ_CP009273 | 3,571,647 | 0 | T | C | 41.0% | 63.1 / 10.8 | 39 | E147G (GAA→GGA) | gntR | gluconate operon transcriptional repressor GntR |
| * | NZ_CP009273 | 529,771 | 0 | C | T | 40.0% | 43.3 / 10.1 | 30 | R134C (CGT→TGT) | gcl | glyoxylate carboligase |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 40.0% | 46.5 / 21.8 | 40 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 3,902,480 | 0 | T | A | 40.0% | 58.3 / 15.9 | 40 | Y107F (TAT→TTT) | pstA | phosphate ABC transporter permease PstA |
| * | NZ_CP009273 | 1,429,984 | 0 | G | A | 39.1% | 27.2 / 11.8 | 23 | intergenic (‑108/+33) | uspF/ompN | universal stress protein UspF/porin OmpN |
| * | NZ_CP009273 | 5,159 | 0 | G | A | 37.5% | 45.1 / 11.8 | 32 | intergenic (+139/‑75) | thrC/yaaX | threonine synthase/DUF2502 domain‑containing protein |
| * | NZ_CP009273 | 2,617,873 | 0 | A | T | 37.1% | 48.4 / 19.6 | 35 | I491F (ATT→TTT) | ppk1 | polyphosphate kinase 1 |
| * | NZ_CP009273 | 3,279,212 | 0 | G | T | 36.8% | 64.9 / 12.6 | 38 | A126S (GCC→TCC) | agaD | PTS galactosamine transporter subunit IID |
| * | NZ_CP009273 | 228,181 | 0 | C | T | 35.9% | 52.9 / 10.1 | 40 | F191F (TTC→TTT) | yafD | endonuclease/exonuclease/phosphatase family protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3612651 | 42 (0.860) | 4 (0.090) | 4/224 | 3.0 | 9.5% | coding (100/4236 nt) | rhsB | rhs element protein RhsB |
| ? | NZ_CP009273 | = 3612810 | NA (NA) | coding (259/4236 nt) | rhsB | rhs element protein RhsB | |||||
| * | ? | NZ_CP009273 | = 725308 | 11 (0.230) | 4 (0.090) | 4/224 | 3.0 | 13.3% | coding (270/4194 nt) | rhsC | rhs element protein RhsC |
| ? | NZ_CP009273 | = 3612640 | 42 (0.950) | coding (89/4236 nt) | rhsB | rhs element protein RhsB | |||||
| * | ? | NZ_CP009273 | 789317 = | 28 (0.570) | 4 (0.090) | 4/230 | 3.1 | 12.9% | coding (784/789 nt) | modE | molybdenum‑dependent transcriptional regulator |
| ? | NZ_CP009273 | 789341 = | 28 (0.610) | coding (760/789 nt) | modE | molybdenum‑dependent transcriptional regulator | |||||
| * | ? | NZ_CP009273 | = 3823713 | 62 (1.270) | 3 (0.070) | 3/226 | 3.4 | 4.9% | intergenic (+17/‑104) | xanP/yicH | xanthine/proton symporter XanP/AsmA family protein |
| ? | NZ_CP009273 | = 3823718 | 59 (1.320) | intergenic (+22/‑99) | xanP/yicH | xanthine/proton symporter XanP/AsmA family protein | |||||
| * | ? | NZ_CP009273 | 311112 = | NA (NA) | 3 (0.070) | 3/220 | 3.4 | NA | coding (111/262 nt) | BW25113_RS01545 | IS3‑like element IS3 family transposase |
| ? | NZ_CP009273 | 311338 = | NA (NA) | coding (76/902 nt) | BW25113_RS01545 | IS3‑like element IS3 family transposase | |||||
| * | ? | NZ_CP009273 | = 26622 | 71 (1.450) | 3 (0.060) | 3/236 | 3.5 | 4.2% | coding (346/951 nt) | ispH | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| ? | NZ_CP009273 | = 26624 | 68 (1.450) | coding (348/951 nt) | ispH | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase | |||||