Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
343 |
268.7 |
10873516 |
97.0% |
10547310 |
150.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
CP009974 |
2,767,372 |
Δ2,604 bp |
|
RPPX_12300–RPPX_12305 |
RPPX_12300, RPPX_12305 |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
CP009974 |
2767372–2769968 |
2769975 |
8–2604 |
264 [1] |
[0] 265 |
RPPX_12300–RPPX_12305 |
RPPX_12300,RPPX_12305 |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP009974 |
= 2767371 | 1 (0.000) | 243 (0.950) |
154/282 |
0.3 |
99.8% |
intergenic (+446/+106) |
RPPX_12295/RPPX_12300 |
serine/threonine protein phosphatase/ATPase AAA |
| ? | CP009974 |
2769976 = |
0 (0.000) | intergenic (‑212/‑224) |
RPPX_12305/RPPX_12310 |
integrase/seryl‑tRNA synthetase |
GATK/CNVnator alignment
N/A
