Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
404 |
265.1 |
10478538 |
96.8% |
10143224 |
150.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
CP009974 |
2,767,372 |
Δ2,604 bp |
|
RPPX_12300–RPPX_12305 |
RPPX_12300, RPPX_12305 |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
CP009974 |
2767372–2769970 |
2769975 |
6–2604 |
239 [1] |
[0] 239 |
RPPX_12300–RPPX_12305 |
RPPX_12300,RPPX_12305 |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP009974 |
= 2767371 | 1 (0.000) | 221 (0.890) |
147/282 |
0.4 |
99.8% |
intergenic (+446/+106) |
RPPX_12295/RPPX_12300 |
serine/threonine protein phosphatase/ATPase AAA |
| ? | CP009974 |
2769976 = |
0 (0.000) | intergenic (‑212/‑224) |
RPPX_12305/RPPX_12310 |
integrase/seryl‑tRNA synthetase |
GATK/CNVnator alignment
N/A
