Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 343 268.7 10873516 97.0% 10547310 150.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP009974 4,905,871 Δ2,603 bp RPPX_21790–RPPX_21795 RPPX_21790, RPPX_21795

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009974 4905871–4908467 4908473 7–2603 239 [10] [0] 230 RPPX_21790–RPPX_21795 RPPX_21790,RPPX_21795

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009974 = 490587010 (0.040)217 (0.840) 146/286 0.7 97.9% intergenic (+920/‑204) RPPX_21780/RPPX_21790 sugar kinase/integrase
?CP009974 4908474 = 0 (0.000)intergenic (+113/+1368) RPPX_21795/RPPX_21805 ATPase AAA/restriction endonuclease subunit R

GATK/CNVnator alignment

N/A