Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
368 |
332.2 |
13092066 |
97.0% |
12699304 |
150.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
CP009974 |
4,905,871 |
Δ2,603 bp |
|
RPPX_21790–RPPX_21795 |
RPPX_21790, RPPX_21795 |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
CP009974 |
4905871–4908467 |
4908473 |
7–2603 |
283 [1] |
[0] 282 |
RPPX_21790–RPPX_21795 |
RPPX_21790,RPPX_21795 |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP009974 |
= 4905870 | 1 (0.000) | 270 (0.860) |
162/286 |
0.9 |
99.8% |
intergenic (+920/‑204) |
RPPX_21780/RPPX_21790 |
sugar kinase/integrase |
| ? | CP009974 |
4908474 = |
0 (0.000) | intergenic (+113/+1368) |
RPPX_21795/RPPX_21805 |
ATPase AAA/restriction endonuclease subunit R |
GATK/CNVnator alignment
N/A
