Hadiastri_2021: Solvent_Tolerance_Pputida
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Metadata |
Mutations |
Converged Mutations |
Fixed Mutations |
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Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A1 F1 I1 R1 | 343 | 268.7 | 10873516 | 97.0% | 10547310 | 150.6 |
Breseq alignment
N/AGATK/CNVnator alignment
GCAGTATAGGAAGCCGTTACCTACATAAACCGCGCTTTTTAGAGCAAATTGCGCTGTAAGCCGTGCTGTTGATTACAATGAAGTCTTTATCGGAATGCCTACAGCGGCGTCGCGTTTGTGCGTAAAATAGCCGGCTTTTGTCACACCTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCAGCGACGCAGGGGTGGCATTGTTAGTCCGGGTTGGCTGGCGTCGTCAATTTCTGCGTCCGTTT > CP009974/3503766‑3504062 | GCAGTATAGGAAGCCGTTACCTACATAAACCGCGCTTTTTAGAGCAAATTGCGCTGTAAGCCGTGCTGTTGATTACAATGAAGTCTTTATCGGAATGCCTACAGCGGCGTCGCGTTTGTGCGTAAAATAGCCGGCTTTTGTCACACCTCGC < SRR10918230.3815433/151‑1 (MQ=60) GAGTATAGGAAGCCGTTACCTACATAAACCGCGCTTTTTAGAGCAAATTGCGCTGTAAGCCGTGCTGTTGATTACAATGAAGTCTTTATCGGAATGCCTACAGCGGCGTCGCGTTTGTGCGTAAAATAGCCGGCTTTTGTCACACCTCGCG < SRR10918230.5266570/151‑1 (MQ=60) TATAGGAAGCCGTTACCTACATAAACCGCGCTTTTTAGAGCAAATTGCGCTGTAAGCCGTGCTGTTGATTACAATGAAGTCTTTATCGGAATGCCTACAGCGGCGTCGCGTTTGTGCGTAAAATAGCCGGCTTTTGTCACACCTC‑‑GCGGAT > SRR10918230.127052/1‑151 (MQ=60) TATAGGAAGCCGTTACCTACATAAACCGCGCTTTTTAGAGCAAATTGCGCTGTAAGCCGTGCTGTTGATTACAATGAAGTCTTTATCGGAATGCCTACAGCGGCGTCGCGTTTGTGCGTAAAATAGCCGGCTTTTGTCACACCTC‑‑GCGGAT > SRR10918230.127741/1‑151 (MQ=60) tctcatgcgttagttccttacaatgacgcccggaaaaatgtgggcgaatgatcgcttttcacaggCTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGC > SRR10918230.2365302/66‑151 (MQ=0) ctcatgcgttagttccttacaatgacgcccggaaaaatgtgggcgaatgatcgcttttcacaggCTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCG > SRR10918230.4750554/65‑151 (MQ=0) catgcgttagttccttacaatgacgcccggaaaaatgtgggcgaatgatcgcttttcacaggCTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCA > SRR10918230.2106973/63‑151 (MQ=0) tgcgttagttccttacaatgacgcccggaaaaatgtgggcgaatgatcgcttttcacaggCTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCAGC < SRR10918230.3702408/91‑1 (MQ=0) aaattgatgtccgcctcctcaacgagaatattgacgtgacagtacagctTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGTCAGTCGGAGCGCAGCGACGCAGGGGTGTCA > SRR10918230.434939/50‑151 (MQ=0) acgcccggaaaaatgtgggcgaatgatcgcttttcacaggCTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCAGCGACGCAGGGGTGGCATTGTT < SRR10918230.108808/111‑1 (MQ=0) gcccggaaaaatgtgggcgaatgatcgcttttcacaggCTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCAGCGACGCAGGGGTGGCATTGTTAG < SRR10918230.3397581/113‑1 (MQ=0) ccggaaaaatgtgggcgaatgatcgcttttcacaggCTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCAGCGACGCAGGGGTGGCATTGTTAGTC > SRR10918230.2757203/37‑151 (MQ=0) tgggcgaatgatcgcttttcacaggCTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCAGCGACGCAGGGGTGGCATTGTTAGTCCGGGTTGGCTG > SRR10918230.2209071/26‑151 (MQ=0) tgggcgaatgatcgcttttcacaggCTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCAGCGACGCAGGGGTGGCATTGTTAGTCCGGGTTGGCTG > SRR10918230.2208801/26‑151 (MQ=0) atgatcgcttttcacaggCTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCAGCGACGCAGGGGTGGCATTGTTAGTCCGGGTTGGCTGGCGTCGT < SRR10918230.2038403/133‑1 (MQ=0) cttttcacaggCTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCAGCGACGCAGGGGTGGCATTGTTAGTCCGGGTTGGCTGGCGTCGTCAATTTC > SRR10918230.4458016/12‑151 (MQ=0) caggCTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCAGCGACGCAGGGGTGGCATTGTTAGTCCGGGTTGGCTGGCGTCGTCAATTTCTGCGTCC < SRR10918230.4828235/147‑1 (MQ=0) CTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCAGCGACGCAGGGGTGGCATTGTTAGTCCGGGTTGGCTGGCGTCGTCAATTTCTGCGTCCGTTT > SRR10918230.5198083/1‑151 (MQ=0) CTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGAC < SRR10918230.5175577/73‑1 (MQ=0) CTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGA < SRR10918230.4733318/72‑1 (MQ=0) CTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGA < SRR10918230.4733691/72‑1 (MQ=0) CTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCG > SRR10918230.2235809/1‑70 (MQ=0) CTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCAT < SRR10918230.3639345/67‑1 (MQ=0) CTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGG > SRR10918230.4747165/1‑48 (MQ=0) CTCGTGCGGATTCCACGCCATTCGGACACTCAGCC > SRR10918230.3248580/1‑35 (MQ=0) CTCGTGCGGATTCCACGCCATTCGGACACTCAGCC > SRR10918230.3248476/1‑35 (MQ=0) CTCGTGCGGATTCCACGCCATTCGGACACTCA > SRR10918230.275207/1‑32 (MQ=6) | GCAGTATAGGAAGCCGTTACCTACATAAACCGCGCTTTTTAGAGCAAATTGCGCTGTAAGCCGTGCTGTTGATTACAATGAAGTCTTTATCGGAATGCCTACAGCGGCGTCGCGTTTGTGCGTAAAATAGCCGGCTTTTGTCACACCTCGTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCAGCGACGCAGGGGTGGCATTGTTAGTCCGGGTTGGCTGGCGTCGTCAATTTCTGCGTCCGTTT > CP009974/3503766‑3504062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |