Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
336 |
367.5 |
14491858 |
96.8% |
14028118 |
150.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
CP009974 |
4,425,765 |
Δ2,602 bp |
|
RPPX_19815–RPPX_19820 |
RPPX_19815, RPPX_19820 |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
CP009974 |
4425765–4428362 |
4428366 |
5–2602 |
360 [2] |
[0] 359 |
RPPX_19815–RPPX_19820 |
RPPX_19815,RPPX_19820 |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP009974 |
= 4425764 | 2 (0.010) | 343 (0.980) |
190/288 |
0.2 |
99.7% |
intergenic (+687/‑204) |
RPPX_19805/RPPX_19815 |
hypothetical protein/integrase |
| ? | CP009974 |
4428367 = |
0 (0.000) | intergenic (+112/+608) |
RPPX_19820/RPPX_19830 |
ATPase AAA/ligand‑gated channel protein |
GATK/CNVnator alignment
N/A
