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Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F1 I1 R1	404	265.1	10478538	96.8%	10143224	150.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	CP009974	4,425,765	Δ2,602 bp		RPPX_19815–RPPX_19820	RPPX_19815, RPPX_19820

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009974	4425765–4428362	4428366	5–2602	276 [1]	[0] 272	RPPX_19815–RPPX_19820	RPPX_19815,RPPX_19820

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009974	= 4425764	1 (0.000)	260 (1.030)	158/288	0.2	99.8%	intergenic (+687/‑204)	RPPX_19805/RPPX_19815	hypothetical protein/integrase
*	?	CP009974	4428367 =	0 (0.000)	260 (1.030)	158/288	0.2	99.8%	intergenic (+112/+608)	RPPX_19820/RPPX_19830	ATPase AAA/ligand‑gated channel protein

GATK/CNVnator alignment

N/A