Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
368 |
332.2 |
13092066 |
97.0% |
12699304 |
150.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
2,910,232 |
T→C |
intergenic (+136/‑523) |
gudD → / → RPPX_12965 |
glucarate dehydratase/GABA permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 2,910,232 | 0 | T | C | 86.9%
| 1283.5
/ 152.0
| 598 | intergenic (+136/‑523) | gudD/RPPX_12965 | glucarate dehydratase/GABA permease |
| Reads supporting (aligned to +/- strand): ref base T (34/44); new base C (221/295); total (255/343) |
| Fisher's exact test for biased strand distribution p-value = 9.03e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
Only 100 of 599 total aligned reads displayed.
CCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATC > CP009974/2910084‑2910379
|
tGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCATTCATTCACCGCCGCACCCGccc > 1:1915424/1‑150 (MQ=255)
gTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCCCCGCCGCACCCGCCAcc < 2:3543915/151‑1 (MQ=255)
gTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCAcc < 1:2714943/151‑1 (MQ=255)
ttGAAGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCAtt < 1:2238391/151‑1 (MQ=255)
tGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATtc < 2:3216541/151‑1 (MQ=255)
gAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCCCCACCGCATtca > 1:2374598/1‑151 (MQ=255)
cGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCg < 2:3659512/151‑1 (MQ=255)
ccTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAc < 2:2397942/151‑1 (MQ=255)
ctctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCAcc < 2:5626203/151‑1 (MQ=255)
ctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAccgt > 1:1008650/1‑149 (MQ=255)
ttCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTc < 1:514455/151‑1 (MQ=255)
tCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCGTTCATCCACCGGCACCGTcc > 1:3938853/1‑150 (MQ=21)
cgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCa < 2:1938748/151‑1 (MQ=25)
ggCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACg < 1:1633859/151‑1 (MQ=255)
gCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACgt < 2:6506839/151‑2 (MQ=25)
aaGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCAc > 1:5390528/1‑147 (MQ=25)
cgccgcatACATCAACCGGCACTGTCGCCCCGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCtt < 2:3032284/144‑1 (MQ=18)
ccGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGtt < 2:4802887/151‑1 (MQ=21)
cGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTg < 2:2331327/151‑1 (MQ=21)
ccTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAgg < 1:475616/151‑1 (MQ=21)
aTCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCgg < 2:2973494/151‑1 (MQ=21)
aaCCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGtt < 2:1008650/151‑1 (MQ=21)
cggcaccgtCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCAc < 1:4972809/144‑1 (MQ=17)
gcgccgtCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTGATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCCCGCCCCCTTGTAGGAGCGGGTTCAccc < 1:836649/146‑1 (MQ=18)
gccacgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATGCCCCCCGTCGTTAACCGCCCCCCCTGCCACCGCATCCATCATCCGGCCCCGTCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAg < 2:1766987/145‑1 (MQ=18)
gCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAg < 1:3792052/151‑1 (MQ=21)
ccgtacCGTTGTAGGAGCGGGTTCACCCGCGAATCGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGcc < 2:4230719/147‑1 (MQ=21)
gcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTc < 1:5778901/106‑1 (MQ=11)
ccacCGGCGTAGGGGCGGGTTCACCCGCGAAGAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg < 2:6214467/150‑1 (MQ=21)
cacCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGa < 1:1428354/151‑1 (MQ=21)
cacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAcc < 1:3427638/103‑1 (MQ=255)
cccctcgTAGCAGCGGGTTCACCCGCGAATAGGCCGTACCTGCCGCCCAATACCCCCAGTCATTCCCCGCCGCACCTGCCACCGCCTTCATCAACCGGCACCGTCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAc < 1:2560713/145‑1 (MQ=25)
acCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAc < 1:1143873/151‑1 (MQ=21)
cccttGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCt < 1:1976003/73‑1 (MQ=17)
tgtggTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCt < 2:1314180/147‑1 (MQ=21)
cgtcgTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCt < 1:3082785/147‑1 (MQ=21)
ttGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCCCGCCCCCCTGTCGGAGCGCGCTCACCCGCGAAGAGGCCGGAccccc > 2:6373082/1‑148 (MQ=18)
tcgTAGGGGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgc < 2:3402744/149‑1 (MQ=255)
gtGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCCCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgc < 1:6350408/150‑1 (MQ=255)
tAGGGGCTGGTTCACCCCCGAATAACCCGCTCCTGCCGCCCAATACCTCCAGTCACTCCTCGCCGCTCCCGCCACCGCATTCATCACTCGGCACCGTCGCCCCCTGCCGTGGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgc < 2:1639978/151‑1 (MQ=16)
tAGGAGCGGGTTCACCCGCGAATAGGCCGGCCCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgc < 1:4235469/151‑1 (MQ=255)
tAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCgg < 1:3359705/121‑1 (MQ=17)
tAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCACCAATCGGCACCCTCGCCCCGCACCCTATGACAACCGCACGCACCCGCGAAGAAGCCGGACCAgccgc > 2:4505260/1‑151 (MQ=14)
aGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgcc < 1:2612229/151‑1 (MQ=255)
aGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCACCAACCGGCACCGTCGCCACGCACCCTGGTACCACCCGGTCCACCCTCGCATCGGCCGGACCCgccccc > 2:4647589/1‑151 (MQ=17)
ggAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCACCAAACCGCACCCTCGCCACCCCCCCTTGTAGGAGCGGGCTCACCAGCGAACAGGCCGCACCCCCCGccc > 2:2872948/1‑151 (MQ=17)
gCGGGTTCCGCCGCGACTAGGCCGGAGTTGCCGCCCAATCCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCGCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAAt < 2:689157/151‑1 (MQ=21)
gCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCATGTAGGAGCGGGTGCACCCGCGAATAGGCCGGACCTGCCGCCCAAt > 2:2137260/1‑151 (MQ=255)
gCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCATCGCCACGCAccc < 2:5787464/104‑1 (MQ=255)
cGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTGGTAGGAGCGGGTTCACCCGCGACTAGGCCGGACCTGCCGCCCAATa > 1:5561970/1‑151 (MQ=255)
cGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACTCCCCCTTGTAGGACCCCGCTCACCCCCGAATAGGCCGGACCTCCCGCCCACTa > 1:4837289/1‑151 (MQ=18)
gggTGCACCCGCGAATAGGCCGGACGTGCCGCCCAATCCGTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAc < 1:4297975/151‑1 (MQ=21)
tCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCCCCCTCCCCCCGCACCCTGGGAGGACCCGGCTCACCCGCGAATAGGCCGGACCAGCCGCCCAAAAccccc > 1:2902970/1‑151 (MQ=21)
tCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCTGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAccccc > 1:1745729/1‑151 (MQ=255)
cACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCa < 1:4492530/151‑1 (MQ=255)
cACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGc > 2:541606/1‑107 (MQ=255)
aCCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTa > 1:619127/1‑101 (MQ=255)
cccGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATa < 2:5569481/122‑1 (MQ=255)
cgcgAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGGTCACCCGCGAATAGGCCGGACCAGCCGCCCAATCCCCCCCGTCa > 2:3858669/1‑151 (MQ=25)
gcgAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTTCCCCCCAATAGCCCCAGCCAt > 2:1537922/1‑151 (MQ=25)
cgAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCAtt < 2:2500726/151‑1 (MQ=255)
cgAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCACCAATCGGCACCGTCGCCACGCCCCCTTGTACGACCGCACTCACCCGCGAATAGGCCGGTCCTCCCGCCCCATACCCCCAGCCAtc > 2:1372217/1‑150 (MQ=21)
gAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTa > 2:4920075/1‑95 (MQ=18)
gAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCCCCACGCCCCCTTGTATGAGCGGGCTCACCCGCGCATAGGCGGGTCCGGCCGCCCCATACCCGCAATcctcc > 2:5253853/1‑147 (MQ=21)
tAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAcc < 1:5505129/151‑1 (MQ=25)
tAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTACGACCCCGCGCACCCGCGAATAGGCCGGCCCTCCCGCCCAACACCCCCCGCCACTCAcc > 2:6099527/1‑151 (MQ=21)
ggCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGcc < 1:4900409/82‑2 (MQ=18)
ccGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCTGcc < 1:1567389/47‑1 (MQ=255)
cgcgccTGCGGCCCAATACCGCCGGGCATTCCCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACcgccgc < 2:4621644/147‑1 (MQ=18)
ggACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTACCAGCCCGTTCACCCGCGAATAGGCCGGACCCCCCGCCCAATACCCCCCGCCATTCACCCACGCa > 2:4033217/1‑151 (MQ=25)
gACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGACGCAc > 1:5729765/1‑151 (MQ=255)
aCCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAACCGGCACCATCGCCACGCACCCTTGTAGGACCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATCCACCGCCGCAcc > 2:4166491/1‑151 (MQ=255)
ccTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCAccc < 2:2656842/151‑1 (MQ=21)
cgccCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCAt > 2:5061545/1‑44 (MQ=255)
cgccCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCAccc < 1:5625160/93‑1 (MQ=25)
cgccCAATACCCCAGGTCACCCCCCGCCGCACCTGCCCCCGCATTCATCCACCGGCACCGTCGCCACGCACCCTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCCGCCGCCCAATCCCCCCAGTCATTCCCCGCCGCACCCGCCAc < 1:349295/151‑1 (MQ=18)
gccCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGcc < 2:1139180/69‑2 (MQ=18)
cccAATACCTCCAGTAATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCg < 1:32221/151‑1 (MQ=21)
cccAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGACTCGGCCGGCCCTGCCGCCCAACACCCCCAGGCACTCACCCTCGCACCCGCCAccc > 1:4001230/1‑150 (MQ=25)
ccAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgc < 1:2114910/112‑1 (MQ=21)
aaTCCCTCCAGTCATCCCCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCAt < 2:813439/151‑1 (MQ=18)
atgcctccAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCAtt < 1:3657637/145‑1 (MQ=18)
cccccAGTCATTCCCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTcat < 1:6157870/151‑3 (MQ=18)
ctccAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGACACCGGCGCCACGCACCTTTGTAGGCGCGGCATCACCCGCGAATAGGCCGGACCTGCCCCCCAAGACCACCAGTCATTCACCGCCGCACCCGCCACCGCATTcatc > 1:5304713/3‑148 (MQ=18)
cccAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGACACGCCCCCTTATAGGAGCAGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCgg < 1:660712/151‑1 (MQ=25)
ccAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcatcaa < 1:1315731/151‑6 (MQ=18)
ccAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATa > 1:2996361/1‑88 (MQ=25)
cAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTcgccagc > 1:4127738/1‑147 (MQ=21)
cAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGCTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCggcc > 2:2713382/1‑149 (MQ=25)
gTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATCCACCGCCGCACCCGCCACCGCATTCGCGGGCaa > 2:1204989/1‑151 (MQ=21)
tCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGc > 1:6473406/1‑67 (MQ=255)
cATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc < 1:6051981/96‑1 (MQ=25)
cATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCACTACCCCCAGTCATTCACCGTCCCCCCCGCCCCCCCATCCGCGCCCAAGc > 2:4322349/1‑151 (MQ=21)
aTTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAg < 1:461960/61‑1 (MQ=255)
cACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGc < 1:1852741/151‑1 (MQ=255)
aCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGt > 2:33147/1‑107 (MQ=255)
gccgcACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGt < 1:5934100/52‑1 (MQ=255)
gccgcACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCCTTGt > 2:5934100/1‑52 (MQ=255)
cgcACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAGGCCCGCTCCtcc > 2:958304/1‑149 (MQ=21)
aCCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACCTc > 2:5329249/1‑151 (MQ=255)
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CCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATTCGCGGGCAAGCCCGCTCCTACATC > CP009974/2910084‑2910379
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
