Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F1 I1 R1 404 265.1 10478538 96.8% 10143224 150.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP009974 2,756,352 Δ2,603 bp [RPPX_12250]–RPPX_12260 [RPPX_12250], RPPX_12255, RPPX_12260

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009974 2756352–2758948 2758954 7–2603 255 [0] [0] 256 [RPPX_12250]–RPPX_12260 [RPPX_12250],RPPX_12255,RPPX_12260

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009974 = 27563510 (0.000)241 (0.960) 155/286 0.2 100% coding (13/318 nt) RPPX_12250 hypothetical protein
?CP009974 2758955 = 0 (0.000)intergenic (‑211/‑1459) RPPX_12260/RPPX_12270 integrase/membrane protein

GATK/CNVnator alignment

N/A