Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
404 |
265.1 |
10478538 |
96.8% |
10143224 |
150.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
4,165,100 |
C→T |
intergenic (‑294/‑181) |
RPPX_18525 ← / → RPPX_18530 |
transporter/16S ribosomal RNA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 4,165,100 | 0 | C | T | 96.7%
| 149.0
/ ‑2.1
| 60 | intergenic (‑294/‑181) | RPPX_18525/RPPX_18530 | transporter/16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (28/30); total (29/31) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.11e-01 |
ATGCGCACCACTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTC > CP009974/4164952‑4165148
|
aTGCGCACCACTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGa > 2:514330/1‑151 (MQ=255)
tGCGCACCACTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGaa < 1:3163230/151‑1 (MQ=255)
tGCGCACCACTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGaa < 2:3554237/151‑1 (MQ=255)
gcACCACTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGaaaag < 2:2533903/151‑3 (MQ=255)
gcACCACTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGaaaag < 1:2682309/151‑3 (MQ=255)
caccacTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGaaaagc > 1:647964/1‑148 (MQ=255)
accacTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATCAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGaaaagct > 2:4982512/1‑147 (MQ=255)
accacTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGaaaagct < 2:991151/151‑5 (MQ=255)
accacTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGaaaagct < 2:2400103/151‑5 (MQ=255)
acTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCtt < 1:5169924/151‑1 (MQ=255)
cTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTa > 1:3923660/1‑151 (MQ=255)
tCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTaa < 2:402351/151‑1 (MQ=255)
tCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTaa > 2:1397871/1‑151 (MQ=255)
tCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTaa > 2:1397648/1‑151 (MQ=255)
accAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAAAAACAAAAAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTaa < 2:402196/150‑1 (MQ=17)
ccAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAAc > 1:3129836/1‑151 (MQ=255)
ccAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAAc < 1:3611675/151‑1 (MQ=255)
aCGCGGTAGCGAAGCAAAGCTAGCCACTGTATTTAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaa > 2:1248455/1‑151 (MQ=255)
aCGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaa < 2:2240074/151‑1 (MQ=255)
cgcgGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaac < 1:3934365/151‑2 (MQ=255)
cgcgGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaac < 1:4411707/151‑2 (MQ=255)
gcgGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacg < 2:3534747/151‑3 (MQ=255)
cgGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgc > 1:1197275/1‑148 (MQ=255)
ggTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgct < 1:2323275/151‑5 (MQ=17)
ggTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgct > 2:718664/1‑147 (MQ=255)
ggTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgct > 1:2020886/1‑147 (MQ=255)
ggTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGATTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCaacgct > 2:1107594/1‑147 (MQ=17)
gTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGctc > 1:3103275/1‑151 (MQ=17)
aGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCtt < 1:2919467/151‑1 (MQ=14)
cGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGTATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTa > 2:4565996/1‑151 (MQ=14)
cGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTa > 1:3099084/1‑151 (MQ=14)
cGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTa < 1:4542838/151‑1 (MQ=14)
gAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTaa > 2:2757666/1‑151 (MQ=14)
aaGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAAc < 1:4871865/151‑1 (MQ=14)
aGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACa < 2:1969329/151‑1 (MQ=14)
gCAAAGGTAGCCACTGGATTGAGTGAAGTGTGTGAAGCTAAGCGAGTTTCTCGCAAAAAACTGCAAGATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACaa < 2:5211946/151‑1 (MQ=11)
gCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACaa < 2:2010689/151‑1 (MQ=14)
cAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACaaa > 1:1754546/1‑151 (MQ=14)
cAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACaaa < 1:1711507/151‑1 (MQ=14)
aaaGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAAt > 1:817184/1‑151 (MQ=14)
aaGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATc < 2:5091906/151‑1 (MQ=14)
aaGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATc > 2:1029447/1‑151 (MQ=14)
aGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCg < 1:3403971/151‑1 (MQ=14)
aGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCg < 1:2123667/151‑1 (MQ=11)
aGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCg < 2:2010591/151‑1 (MQ=11)
aGCTAGCAACTGTATTGAGTAAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCg < 2:4279832/151‑1 (MQ=11)
gCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGa < 1:3726740/151‑1 (MQ=11)
gCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGa > 2:714126/1‑151 (MQ=11)
cTAGCCACTGTATAGAGACAAGAGATTGAAGCTAAACGAGTTTCTAGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGaa > 2:3577941/1‑151 (MQ=11)
tAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAAt > 1:915195/1‑151 (MQ=11)
tAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAAt > 1:2612827/1‑151 (MQ=11)
tAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAAt > 1:636292/1‑151 (MQ=11)
aGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATc < 2:4453255/151‑1 (MQ=11)
gCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCa < 2:3746211/151‑1 (MQ=11)
aCTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGc > 1:1199721/1‑151 (MQ=11)
tGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCaa > 2:4758951/1‑151 (MQ=11)
tGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCGCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCaa > 2:246453/1‑151 (MQ=11)
gaagcgAGTTAAGTGACTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCaa > 2:4206179/6‑151 (MQ=1)
tATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGCAAtt > 1:1367519/1‑151 (MQ=255)
gcgAGTTAAGTGACTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTc < 1:3624635/149‑1 (MQ=11)
|
ATGCGCACCACTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTC > CP009974/4164952‑4165148
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAATGCGCACCACTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGT > CP009974/4164950‑4165250
|
TAATGCGCACCACTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGAT < SRR10918231.4791470/151‑1 (MQ=60)
TGCGCACCACTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAA < SRR10918231.3177660/151‑1 (MQ=60)
GCACCACTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAG < SRR10918231.2694653/151‑1 (MQ=60)
ACTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTT < SRR10918231.5195374/151‑1 (MQ=60)
CTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTA > SRR10918231.3941987/1‑151 (MQ=60)
CCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAAC < SRR10918231.3628164/151‑1 (MQ=60)
CCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAAC > SRR10918231.3144126/1‑151 (MQ=60)
CGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCAAC < SRR10918231.3952748/151‑1 (MQ=51)
CGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACCAAC < SRR10918231.4432629/151‑1 (MQ=51)
CGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGC > SRR10918231.1202900/1‑151 (MQ=47)
GGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCT < SRR10918231.2333814/151‑1 (MQ=44)
GGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCT > SRR10918231.2029955/1‑151 (MQ=44)
GTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTC > SRR10918231.3117451/1‑151 (MQ=42)
AGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTT < SRR10918231.2932806/151‑1 (MQ=38)
CGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTA > SRR10918231.3113236/1‑151 (MQ=34)
CGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTA < SRR10918231.4564483/151‑1 (MQ=34)
AAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAAC < SRR10918231.4895329/151‑1 (MQ=30)
CAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAA < SRR10918231.1719366/151‑1 (MQ=25)
CAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAA > SRR10918231.1762587/1‑151 (MQ=25)
AAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAAT > SRR10918231.820529/1‑151 (MQ=23)
AGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCG < SRR10918231.3419406/151‑1 (MQ=19)
AGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCG < SRR10918231.2133203/151‑1 (MQ=19)
GCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGA < SRR10918231.3743847/151‑1 (MQ=17)
TAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAAT > SRR10918231.638694/1‑151 (MQ=10)
TAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAAT > SRR10918231.919115/1‑151 (MQ=10)
TAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAAT > SRR10918231.2624860/1‑151 (MQ=10)
atcgaagcgagttaagtgacTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAG < SRR10918231.4483409/131‑1 (MQ=0)
agcgaagcgagttaagtgacTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAG < SRR10918231.3246796/131‑1 (MQ=0)
ACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGATGAAAAGCTCTTAACC‑AACGCTCTTTAACAAATCGAATCAAGC > SRR10918231.1205360/1‑151 (MQ=0)
gaagcgagttaagtgacTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAA < SRR10918231.3836597/134‑1 (MQ=0)
AGTTAAGTGACTGAAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTG < SRR10918231.1123279/151‑1 (MQ=0)
CAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGG > SRR10918231.4688398/1‑151 (MQ=0)
AAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGG > SRR10918231.3519507/1‑151 (MQ=0)
AAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGG < SRR10918231.4893736/151‑1 (MQ=0)
GTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCT > SRR10918231.76827/1‑151 (MQ=0)
AAGTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGA < SRR10918231.5240893/151‑1 (MQ=0)
AAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGA > SRR10918231.4556351/1‑151 (MQ=0)
GTTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGT < SRR10918231.4229464/151‑1 (MQ=0)
AAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACG > SRR10918231.4651501/1‑151 (MQ=0)
AACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGG > SRR10918231.1523412/1‑151 (MQ=0)
CGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGAC < SRR10918231.4768375/151‑1 (MQ=0)
GAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACT > SRR10918231.4663094/1‑151 (MQ=0)
AGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTG > SRR10918231.1106358/1‑151 (MQ=0)
TTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATA < SRR10918231.3117739/151‑1 (MQ=0)
CTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGT > SRR10918231.1193152/1‑151 (MQ=0)
CTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGT > SRR10918231.3215856/1‑151 (MQ=0)
CGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCA > SRR10918231.2026312/1‑151 (MQ=0)
CGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCA > SRR10918231.408485/1‑151 (MQ=0)
CAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAA > SRR10918231.576582/1‑151 (MQ=0)
AAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAA > SRR10918231.1471571/1‑151 (MQ=0)
AAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGA > SRR10918231.1443093/1‑151 (MQ=0)
AACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGAT > SRR10918231.2078272/1‑151 (MQ=0)
CTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTA > SRR10918231.4590940/1‑151 (MQ=0)
CTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTA < SRR10918231.4216520/151‑1 (MQ=0)
TTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTAT > SRR10918231.2924016/1‑151 (MQ=0)
CAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCA < SRR10918231.1256856/151‑1 (MQ=0)
CAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCA > SRR10918231.269069/1‑151 (MQ=0)
AAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGC > SRR10918231.1946221/1‑151 (MQ=0)
AATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCA > SRR10918231.5205776/1‑151 (MQ=0)
ATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCAT > SRR10918231.3921167/1‑151 (MQ=0)
AACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCAC > SRR10918231.1780763/1‑151 (MQ=0)
GTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGT < SRR10918231.3774798/151‑1 (MQ=0)
GACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGC > SRR10918231.3622438/1‑151 (MQ=0)
ACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCC < SRR10918231.2999830/151‑1 (MQ=0)
CAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCA < SRR10918231.4966697/151‑1 (MQ=0)
GCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGC < SRR10918231.4796009/151‑1 (MQ=0)
GCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGC < SRR10918231.3745670/151‑1 (MQ=0)
CTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCG < SRR10918231.4004416/151‑1 (MQ=0)
CTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCG > SRR10918231.4939191/1‑151 (MQ=0)
TCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGA < SRR10918231.3045493/151‑1 (MQ=0)
CTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAG < SRR10918231.2403753/151‑1 (MQ=0)
TGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGA > SRR10918231.3249052/1‑151 (MQ=0)
GAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAA > SRR10918231.1502595/1‑151 (MQ=0)
GAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAA > SRR10918231.783665/1‑151 (MQ=0)
GAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATC < SRR10918231.1824278/151‑1 (MQ=0)
GAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATC > SRR10918231.1793080/1‑151 (MQ=0)
GAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATC > SRR10918231.3744953/1‑151 (MQ=0)
GAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATC > SRR10918231.3744976/1‑151 (MQ=0)
AAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCAC < SRR10918231.2943386/151‑1 (MQ=0)
CGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATA < SRR10918231.481171/151‑1 (MQ=0)
TAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGT > SRR10918231.632438/1‑151 (MQ=0)
AGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTC > SRR10918231.4320501/1‑151 (MQ=0)
AGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTC < SRR10918231.2711543/151‑1 (MQ=0)
AGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTC < SRR10918231.5176557/151‑1 (MQ=0)
TGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTT < SRR10918231.1716552/151‑1 (MQ=0)
TGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTT < SRR10918231.1317300/151‑1 (MQ=0)
GCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTG < SRR10918231.1299342/151‑1 (MQ=0)
CTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTG < SRR10918231.1003654/151‑1 (MQ=0)
CTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTG < SRR10918231.3293987/151‑1 (MQ=0)
CTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTG < SRR10918231.772048/151‑1 (MQ=0)
TCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGC > SRR10918231.3314037/1‑151 (MQ=0)
GGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTG < SRR10918231.3533963/151‑1 (MQ=0)
GGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTG < SRR10918231.1314237/151‑1 (MQ=0)
GTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAGGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGA < SRR10918231.4943098/151‑1 (MQ=0)
AGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCA < SRR10918231.1055571/151‑1 (MQ=0)
GACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAA > SRR10918231.4834546/1‑151 (MQ=0)
GACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAA > SRR10918231.4473661/1‑151 (MQ=0)
GACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAA < SRR10918231.885181/151‑1 (MQ=0)
ACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAG > SRR10918231.1939396/1‑151 (MQ=0)
CGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGT < SRR10918231.3616227/151‑1 (MQ=0)
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TAATGCGCACCACTCCAACGCGGTAGCGAAGCAAAGCTAGCCACTGTATTGAGTCAAGTGTTTGAAGCTAAACGAGTTTCTCGCAAAAAACTTCAAAATAAACGCTTGACAGGCTCTGAGGAAAGCGTAGAATGCGCGCCTCGGTTGAGACGAAAGGTTCTTAACCAAACGCTCTTTAACAAATCGAATCAAGCAATTCGTGTGGGTGCTTGTGAGTACGGACTGATAGTCAAAAAGATTATCAGCATCACAAGTGGCCATGCGAGAAATCACATAGTCATTTGAGATTGCTGAGCCAAGT > CP009974/4164950‑4165250
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
