Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,867,062 C→A 14.3% R258L (CGC→CTC)  dgoK ← 2‑oxo‑3‑deoxygalactonate kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,867,0620CA14.3% 893.8 / 81.7 263R258L (CGC→CTC) dgoK2‑oxo‑3‑deoxygalactonate kinase
Reads supporting (aligned to +/- strand):  ref base C (122/103);  new base A (14/23);  total (136/127)
Fisher's exact test for biased strand distribution p-value = 7.64e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 269 total aligned reads displayed.

CTCGTCGGGCGTAATACCGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCGGGGAAGTGTTCCCAGCACATGCGAGGCG  >  CP009273/3866913‑3867211
                                                                                                                                                     |                                                                                                                                                     
    tcgGGCGTAATACCGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAgcgcgc                                                                                                                                                   >  1:4326269/1‑150 (MQ=255)
     cgGGCGTAATACCGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGcgcgcg                                                                                                                                                  >  2:2232927/1‑150 (MQ=255)
     cgGGCGTAATACCGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGcgcgcg                                                                                                                                                  >  2:3061727/1‑150 (MQ=255)
         cGTAATACCGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCTCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCa                                                                                                                                              <  1:4190526/150‑1 (MQ=255)
         cGTAATACCGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCTCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCa                                                                                                                                              <  1:1860420/150‑1 (MQ=255)
         cGTAATACCGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCa                                                                                                                                              <  1:2895690/150‑1 (MQ=255)
          gTAATACCGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAg                                                                                                                                             >  2:1533584/1‑150 (MQ=255)
            aaTACCGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCg                                                                                                                                           >  2:4241376/1‑150 (MQ=255)
            aaTACCGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCg                                                                                                                                           >  1:2507862/1‑150 (MQ=255)
             aTACCGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGa                                                                                                                                          >  1:1579427/1‑150 (MQ=255)
              tACCGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGAt                                                                                                                                         <  1:3582378/150‑1 (MQ=255)
                ccGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGt                                                                                                                                       <  2:2975586/150‑1 (MQ=255)
                ccGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGt                                                                                                                                       <  2:2975580/150‑1 (MQ=255)
                      aaaaTGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGc                                                                                                                                 >  1:1314391/1‑150 (MQ=255)
                        aaTGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGa                                                                                                                               <  2:2831086/150‑1 (MQ=255)
                           ggCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACaa                                                                                                                            <  2:2686027/150‑1 (MQ=255)
                                tCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTg                                                                                                                       >  1:4439970/1‑150 (MQ=255)
                                tCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGAGCGCGGTCAGCGATGTTCCGGCGACAAGGGTg                                                                                                                       >  1:3641489/1‑150 (MQ=255)
                                  aGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGAt                                                                                                                     >  1:2492001/1‑150 (MQ=255)
                                   gCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATg                                                                                                                    >  2:4538094/1‑150 (MQ=255)
                                    cGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGAGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATgg                                                                                                                   <  2:744811/150‑1 (MQ=255)
                                     gggAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGc                                                                                                                  <  1:4497892/150‑1 (MQ=255)
                                     gggAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGc                                                                                                                  >  1:816979/1‑150 (MQ=255)
                                     gggAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGc                                                                                                                  >  1:4185111/1‑150 (MQ=255)
                                        agtttagtttGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCgtg                                                                                                               >  1:4588062/1‑150 (MQ=255)
                                         gtttagtttGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCgtgt                                                                                                              >  1:106668/1‑150 (MQ=255)
                                          tttagtttGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGtt                                                                                                             <  1:3148599/150‑1 (MQ=255)
                                          tttagtttGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGtt                                                                                                             <  2:1937721/150‑1 (MQ=255)
                                            tagtttGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGa                                                                                                           <  2:850362/150‑1 (MQ=255)
                                              gtttGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATg                                                                                                         >  2:1183662/1‑150 (MQ=255)
                                               tttGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATgg                                                                                                        >  2:590052/1‑150 (MQ=255)
                                                ttGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATggg                                                                                                       >  2:1404918/1‑150 (MQ=255)
                                                  gCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGcc                                                                                                     <  1:86256/150‑1 (MQ=255)
                                                   ccACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGAGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCca                                                                                                    <  1:395948/150‑1 (MQ=255)
                                                      cTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACAt                                                                                                 <  2:2000731/150‑1 (MQ=255)
                                                       tGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATa                                                                                                >  1:2857302/1‑150 (MQ=255)
                                                        gCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAg                                                                                               <  2:2385942/150‑1 (MQ=255)
                                                          aTGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTc                                                                                             >  2:4390107/1‑150 (MQ=255)
                                                          aTGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTc                                                                                             <  1:2226504/150‑1 (MQ=255)
                                                          aTGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTc                                                                                             <  1:2537985/150‑1 (MQ=255)
                                                           tGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTACGTCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTcg                                                                                            >  1:3485888/1‑150 (MQ=255)
                                                            gAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTcgc                                                                                           >  1:193367/1‑150 (MQ=255)
                                                            gAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTcgc                                                                                           <  1:4533071/150‑1 (MQ=255)
                                                             aGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTcgcg                                                                                          >  1:201036/1‑150 (MQ=255)
                                                               cGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCa                                                                                        <  2:3947173/150‑1 (MQ=255)
                                                                gATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCAt                                                                                       >  2:226565/1‑150 (MQ=255)
                                                                gATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCAt                                                                                       <  2:4516395/150‑1 (MQ=255)
                                                                   gCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACt                                                                                    >  2:1966552/1‑150 (MQ=255)
                                                                     tCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTgg                                                                                  >  1:1039990/1‑150 (MQ=255)
                                                                       cTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCg                                                                                >  1:921521/1‑150 (MQ=255)
                                                                       cTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGAGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCg                                                                                <  2:1836092/150‑1 (MQ=255)
                                                                        ttATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGa                                                                               <  2:1872077/150‑1 (MQ=255)
                                                                           taCCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACct                                                                            <  1:3773528/150‑1 (MQ=255)
                                                                           taCCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACct                                                                            <  1:2981456/150‑1 (MQ=255)
                                                                             ccAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACctct                                                                          <  2:3471243/150‑1 (MQ=255)
                                                                              cAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTg                                                                         <  1:1162669/150‑1 (MQ=255)
                                                                               aGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTgc                                                                        >  2:3158155/1‑150 (MQ=255)
                                                                                   tGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCa                                                                    <  1:398036/150‑1 (MQ=255)
                                                                                       aTGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATca                                                                <  2:242691/150‑1 (MQ=255)
                                                                                       aTGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATca                                                                <  2:4074942/150‑1 (MQ=255)
                                                                                          ccGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCCTCGCCTGAAAGGCTTGCTGGTAGAGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATcaaca                                                             <  2:1529382/150‑1 (MQ=255)
                                                                                          ccGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGAGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATcaaca                                                             <  2:3917696/150‑1 (MQ=255)
                                                                                            gtgtCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACaaa                                                           >  1:301130/1‑150 (MQ=255)
                                                                                            gtgtCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACaaa                                                           <  2:3827234/150‑1 (MQ=255)
                                                                                            gtgtCGCCAGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGATGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAAGCAACaaa                                                           >  1:1198743/1‑150 (MQ=255)
                                                                                               tCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCa                                                        <  1:3549152/150‑1 (MQ=255)
                                                                                               tCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCa                                                        <  1:4118977/150‑1 (MQ=255)
                                                                                                cgcccgccACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCag                                                       >  1:3343809/1‑150 (MQ=255)
                                                                                                cgcccgccACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCag                                                       >  1:3395563/1‑150 (MQ=255)
                                                                                                cgcccgccACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGAGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCag                                                       >  2:1695634/1‑150 (MQ=255)
                                                                                                          cgccgTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTc                                             <  2:1045719/150‑1 (MQ=255)
                                                                                                            ccgTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGc                                           <  2:263256/150‑1 (MQ=255)
                                                                                                             cgTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCt                                          >  1:2677617/1‑150 (MQ=255)
                                                                                                             cgTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCt                                          >  1:1906482/1‑150 (MQ=255)
                                                                                                              gTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTg                                         >  2:597723/1‑150 (MQ=255)
                                                                                                                cACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGAc                                       <  1:2210278/150‑1 (MQ=255)
                                                                                                                      gCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTc                                 >  1:4044231/1‑150 (MQ=255)
                                                                                                                      gCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTc                                 <  1:1386965/150‑1 (MQ=255)
                                                                                                                      gCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCAACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTc                                 <  1:3811865/150‑1 (MQ=255)
                                                                                                                      gCAACCCATCGCCTGAAAGGCTTGCTGGTAGAGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTc                                 >  1:2277084/1‑150 (MQ=255)
                                                                                                                       cAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTcg                                >  2:2145168/1‑150 (MQ=255)
                                                                                                                        aaCCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTcgc                               >  1:271331/1‑150 (MQ=255)
                                                                                                                         aCCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTcgcg                              >  1:3318817/1‑150 (MQ=255)
                                                                                                                         aCCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTcgcg                              <  2:330598/150‑1 (MQ=255)
                                                                                                                          cccATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCgg                             <  2:1272676/150‑1 (MQ=255)
                                                                                                                           ccATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCggg                            >  1:909195/1‑150 (MQ=255)
                                                                                                                           ccATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCggg                            <  2:1758098/150‑1 (MQ=255)
                                                                                                                            cATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCgggg                           >  2:1128594/1‑150 (MQ=255)
                                                                                                                            cATCGCCTGAAAGGCTTGCTGGTAGAGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCgggg                           <  2:2545107/150‑1 (MQ=255)
                                                                                                                               cGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCACCAAACCAGAGAGAAATTCGCTGACCTGTTCGCGGGGAAg                        <  2:70104/150‑1 (MQ=255)
                                                                                                                               cGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCGGGGAAg                        >  2:2049389/1‑150 (MQ=255)
                                                                                                                               cGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCGGGGAAg                        >  2:2567343/1‑150 (MQ=255)
                                                                                                                                 ccTGAAAGGCTTGCTGGTAGAGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCGGGGAAgtg                      >  2:1675518/1‑150 (MQ=255)
                                                                                                                                   tGAAAGGCTTGCTGGTAGAGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCGGGGAAGTGtt                    <  1:1946183/150‑1 (MQ=255)
                                                                                                                                    gAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCGGGGAAGTGTTc                   <  2:3275490/150‑1 (MQ=255)
                                                                                                                                       aGGCTTGCTGGTAGAGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCGGGGAAGTGTTCCCa                <  1:835231/150‑1 (MQ=255)
                                                                                                                                           ttGCTGGTAGAGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCGGGGAAGTGTTCCCAGcac            >  1:4212911/1‑150 (MQ=255)
                                                                                                                                            tGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCGGGGAAGTGTTCCCAGcaca           >  2:2098627/1‑150 (MQ=255)
                                                                                                                                               tGGTAGAGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCGGGGAAGTGTTCCCAGCACATGc        >  1:3259649/1‑150 (MQ=255)
                                                                                                                                                   aGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCGGGGAAGTGTTCCCAGCACATGCGAgg    <  1:4143436/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CTCGTCGGGCGTAATACCGCGCAAAATGGCGATCAGCGGGAGTTTAGTTTGCCACTGCATGAGCGATGCTCCTTATACCAGCCTGAAATGCCGTGTCGCCCGCCACCGCCGTCACGTCGCAACCCATCGCCTGAAAGGCTTGCTGGTAGCGCGCGGTCAGCGATGTTCCGGCGACAAGGGTGATGGCGTGTTGATGGGCCACATAGTCGCGCATACTGGCGACCTCTGCGCCAATCAACAAACCAGAGAGAAATTCGCTGACCTGTTCGCGGGGAAGTGTTCCCAGCACATGCGAGGCG  >  CP009273/3866913‑3867211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A