Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F224 I0 R1
|
1457 |
284.0 |
9290224 |
95.7% |
8890744 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
4,208,942 |
C→A |
52.8% |
A140E (GCG→GAG) |
aceK → |
isocitrate dehydrogenase kinase/phosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 4,208,942 | 0 | C | A | 52.8%
| 76.2
/ inf
| 279 | A140E (GCG→GAG) | aceK | isocitrate dehydrogenase kinase/phosphatase |
| Reads supporting (aligned to +/- strand): ref base C (70/61); new base A (91/56); total (162/117) |
| Fisher's exact test for biased strand distribution p-value = 1.81e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.02e-01 |
Only 100 of 282 total aligned reads displayed.
GCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGACAACCT > CP009273/4208793‑4209089
|
gCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATATTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGc > 1:4093713/1‑150 (MQ=255)
cGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGgaga > 2:3685786/1‑150 (MQ=255)
ttACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTTACCACCGCTCGCTTACTCCCGAGCGGCTTTTTAACTTTAGCTCTCAGCCAGAGCGACGCATTCGTACCAATCCCCGCCAGCTGGCGAAAGa > 2:934636/1‑150 (MQ=255)
cgcTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCAc > 2:3037931/1‑150 (MQ=255)
cTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCAccc < 1:3902749/150‑1 (MQ=255)
ttCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCAcccc < 2:3936736/150‑1 (MQ=255)
ttCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTAGTACCAATCCCCCCCCCCTGGCGAAAGACTTTAAcccc > 1:102920/1‑150 (MQ=255)
cGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGa < 2:4616921/150‑1 (MQ=255)
gagaTTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGAt > 1:4253387/1‑150 (MQ=255)
agaTTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATc < 2:1691356/150‑1 (MQ=255)
gaTTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACGCCCGAGCGGCTTTTTATGGTTAGCGCTCAGCCAGAGCGCCGCCTTCGTAACATTACCCCCCCCCAGGAGAAAGACATTAAACCCCATCa > 1:3089118/1‑150 (MQ=255)
gCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGc < 2:526056/150‑1 (MQ=255)
cGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCt < 2:1853259/150‑1 (MQ=255)
cGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCt < 2:2695876/150‑1 (MQ=255)
ggAGCGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTTCTCCCGAGCGGCTTTTGATCTTTAGCTCTCAGCCAGATCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGATATACTTTCACCCCGCTACCGGCTg < 2:3065469/150‑1 (MQ=255)
ggAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTg > 2:3077928/1‑150 (MQ=255)
ggAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTg > 1:1072054/1‑150 (MQ=255)
ggAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTg > 2:2956106/1‑150 (MQ=255)
ggAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCAAGGCTg > 2:4158977/1‑150 (MQ=255)
gagCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCCGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGa > 2:2048569/1‑150 (MQ=255)
gagCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCGGGGa > 1:644463/1‑150 (MQ=255)
cTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATATTTAGCTCTCAGCCAGATCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGACtc > 2:3674313/1‑150 (MQ=255)
cTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATATTTAGCACTCAGCCAGAGCGCCGCGTTGGTTACATTACCCGCCCGCGGGAGAAAGAATTTAAACCCGATAAACGCTGGGAAta > 1:1578079/1‑149 (MQ=255)
tttttAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAAtctc > 2:1396611/1‑150 (MQ=255)
tttttAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAAtctc < 2:575441/150‑1 (MQ=255)
aCTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGa < 1:600066/150‑1 (MQ=255)
aCTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCAGTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGa < 1:3566640/150‑1 (MQ=255)
cTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGAt > 2:1043547/1‑150 (MQ=255)
cTCCGTGTACTGGCGGTTATTTGTCCACCGCTCGCTTACTCCCGAGCGGCTTTTTTTCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCGCCGCCCGCTGGCGAAAGACTTTCACCCCGATCCCGGCTGGGAATCTCTACTGAt > 2:2355018/1‑150 (MQ=255)
ccGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATgc < 1:1430574/150‑1 (MQ=255)
ccGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTAAATTTAGCTCTCAGCCAGAGCCCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACATTCACCCCGCACACGGCTGGGAATATCTACTGATgc > 2:2823415/1‑150 (MQ=255)
cGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATgcg > 2:3801879/1‑150 (MQ=255)
cGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACAGATgcg > 2:1475777/1‑150 (MQ=255)
cGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACATTCACCCCGATCACGGCTGGGAATCTCTACTGATgcg > 1:4204402/1‑150 (MQ=255)
gtttACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATATTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTACCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATgcgc > 1:1486148/4‑150 (MQ=255)
tgtACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGATCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGcgcg > 2:4232525/1‑150 (MQ=255)
aCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATATTTATATCTCAGCCAGAGCGCCGCATTAGTACCAATACCCCCCCCCGGGCGAAAGACTTTAACCCCCAACACCGCTGGGAATATCTACTGATTCGCGGTa > 1:2466375/1‑150 (MQ=255)
cTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTAt > 1:1764382/1‑150 (MQ=255)
tGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATc < 2:2628206/150‑1 (MQ=255)
tCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAg > 2:1349815/1‑150 (MQ=255)
cGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGc < 2:4351501/150‑1 (MQ=255)
gTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGa < 2:3621184/150‑1 (MQ=255)
ttATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGAc < 2:261504/150‑1 (MQ=255)
ttATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGAc < 1:1544746/150‑1 (MQ=255)
ttATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGAc < 1:2724194/150‑1 (MQ=255)
tATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGAcc < 2:1581742/150‑1 (MQ=255)
tATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCCCCCGCTGGAGAAAGACTTTCACCCCCATCACGGCGGGGAATATCTACTGATGCGCGTTATCAGCGAcc > 1:1655999/1‑150 (MQ=255)
aTTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGGTATCAGCGACCt > 2:623896/1‑150 (MQ=255)
gACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCg < 2:880655/150‑1 (MQ=255)
ccaccGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGct < 1:2305047/150‑1 (MQ=255)
ccaccGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGct > 1:3662066/1‑150 (MQ=255)
ctcgctTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGctgcgcct < 2:1528955/150‑1 (MQ=255)
ctcgctTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATATCTACTGATGCGCGTTATCAGCGACCTACCGctgcgcct > 2:1660981/1‑150 (MQ=255)
tcgctTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGctgcgcctg < 2:1011055/150‑1 (MQ=255)
gctTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGctgcgcctgcg > 1:1110496/1‑150 (MQ=255)
gctTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGctgcgcctgcg > 2:2162752/1‑150 (MQ=255)
ttACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCt < 1:3418596/150‑1 (MQ=255)
tACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTg > 2:12414/1‑150 (MQ=255)
tACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTACCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATATCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTg > 2:8553/1‑150 (MQ=255)
tACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTAACATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCCAACACGGCTGGGAATATCTACAGATGCGCGTTATAAGCGACCTACCGcagcgcctgcgcag > 1:1266900/1‑148 (MQ=255)
cTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGc < 2:2862892/150‑1 (MQ=255)
tCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCa < 1:2079343/150‑1 (MQ=255)
tCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCGTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATAACGGCGGGGAATCGAAACTGATGCGCGTTATCAGCGACCTACCCCTGCGCCTGCGCAGGCa > 1:4038225/1‑150 (MQ=255)
cccGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAg < 2:4163918/150‑1 (MQ=255)
cGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGaa > 2:3300082/1‑150 (MQ=255)
gAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATATCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAAt > 1:4464769/1‑150 (MQ=255)
ggCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATaaaa > 1:3965161/1‑150 (MQ=255)
ggCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATATCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATaaaa > 2:4108827/1‑150 (MQ=255)
ggCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATATCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATaaaa > 2:3259724/1‑150 (MQ=255)
gCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATATCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAg > 1:525030/1‑150 (MQ=255)
cTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGc < 1:3508206/150‑1 (MQ=255)
tttttATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGcc > 1:1845267/1‑150 (MQ=255)
ttttATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCg < 2:1922460/150‑1 (MQ=255)
ttttATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCg > 1:3403993/1‑150 (MQ=255)
ttATCTTGAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTg < 2:3339008/150‑1 (MQ=255)
tATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGa < 1:2597435/150‑1 (MQ=255)
tCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATATCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACa > 2:74462/1‑150 (MQ=255)
tAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCca > 1:767758/1‑150 (MQ=255)
ctctCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCcatta < 1:3825761/150‑1 (MQ=255)
ctcAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCcattaca < 2:2540886/150‑1 (MQ=255)
aGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATATCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCcattacatta < 1:2123221/150‑1 (MQ=255)
cAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATATCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTc > 1:1834248/1‑150 (MQ=255)
agagCGCCGCTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCg < 2:3291530/150‑1 (MQ=255)
gcgcCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCa < 1:2824966/150‑1 (MQ=255)
gccgcTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATc > 2:3115122/1‑150 (MQ=255)
gccgcTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATc > 2:2173251/1‑150 (MQ=255)
ccgcTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATATCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCt > 2:14544/1‑150 (MQ=255)
cgcTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTg < 1:392359/150‑1 (MQ=255)
cgcTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTg < 1:3284899/150‑1 (MQ=255)
gcTTTCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGa < 1:2098093/150‑1 (MQ=255)
tttCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACg > 1:3708866/1‑150 (MQ=255)
ttCGTACCATTCCCCGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATATCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACgg > 2:375052/1‑150 (MQ=255)
gTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGaaa > 1:4523536/1‑150 (MQ=255)
cATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCt < 1:1316991/150‑1 (MQ=255)
aTTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTg < 1:2804632/150‑1 (MQ=255)
ccccGCCCGCTGGAGAAAGACTTTCACCCCGATCACGGCTGGGAATATCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTgggg > 1:1396276/1‑150 (MQ=255)
cccgcccgCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGga < 1:3037866/150‑1 (MQ=255)
ccgcccgcTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGgac < 2:4093554/150‑1 (MQ=255)
gcccgcTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGgacag < 2:3146286/150‑1 (MQ=255)
cTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGACAAc > 1:1885884/1‑150 (MQ=255)
|
GCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGACAACCT > CP009273/4208793‑4209089
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
