Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F309 I0 R1 1697 197.2 6627756 95.7% 6342762 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,377,451 A→T 20.8% S59S (TCT→TCA)  mdh ← malate dehydrogenase, NAD(P)‑binding

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,377,4510AT20.8% 477.2 / 113.4 206S59S (TCT→TCA) mdhmalate dehydrogenase, NAD(P)‑binding
Reads supporting (aligned to +/- strand):  ref base A (80/83);  new base T (21/22);  total (101/105)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 206 total aligned reads displayed.

GTTTTCGCAACTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCAAGCGCCTGGCCAA  >  CP009273/3377305‑3377593
                                                                                                                                                  |                                                                                                                                              
 ttttCGCAACTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGa                                                                                                                                              >  1:1945044/1‑148 (MQ=255)
    tCGCAACTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGaaaa                                                                                                                                           <  2:455022/148‑1 (MQ=255)
       cAACTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAAcc                                                                                                                                        >  1:1114729/1‑148 (MQ=255)
        aaCTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCt                                                                                                                                       <  2:826874/148‑1 (MQ=255)
         aCTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCtt                                                                                                                                      >  2:1821712/1‑148 (MQ=255)
         aCTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCtt                                                                                                                                      <  1:1223697/148‑1 (MQ=255)
         aCTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCtt                                                                                                                                      >  2:518794/1‑148 (MQ=255)
         aCTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCtt                                                                                                                                      <  1:550314/148‑1 (MQ=255)
          cTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCttt                                                                                                                                     <  1:2914039/148‑1 (MQ=255)
           ttGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTg                                                                                                                                    <  1:266842/148‑1 (MQ=255)
           ttGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTg                                                                                                                                    <  2:235754/148‑1 (MQ=255)
            tGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGTTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGa                                                                                                                                   <  1:2277513/148‑1 (MQ=255)
            tGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGa                                                                                                                                   >  1:2055742/1‑148 (MQ=255)
             gCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGAt                                                                                                                                  >  1:2100826/1‑148 (MQ=255)
               tGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGAttt                                                                                                                                >  2:1247380/1‑148 (MQ=255)
                gTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTGTGAtttt                                                                                                                               >  2:614211/1‑148 (MQ=255)
                   ccAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAAAAAAACCTTTGATTTTcac                                                                                                                            <  1:2485354/148‑1 (MQ=255)
                    cAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTcaca                                                                                                                           >  1:1345941/1‑148 (MQ=255)
                    cAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTcaca                                                                                                                           <  2:1666223/148‑1 (MQ=255)
                    cAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCCCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTcaca                                                                                                                           >  2:513402/1‑148 (MQ=255)
                     aGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCAcag                                                                                                                          <  1:1739002/148‑1 (MQ=255)
                     aGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCAcag                                                                                                                          >  1:644390/1‑148 (MQ=255)
                      ggTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCAcagc                                                                                                                         >  2:2967774/1‑148 (MQ=255)
                      ggTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCAcagc                                                                                                                         >  2:2608245/1‑148 (MQ=255)
                       gTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCAcagca                                                                                                                        <  1:2790164/148‑1 (MQ=255)
                       gTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCAcagca                                                                                                                        <  1:1706604/148‑1 (MQ=255)
                         ttttCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGt                                                                                                                      >  2:1803077/1‑148 (MQ=255)
                             cACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAggg                                                                                                                  >  1:2076281/1‑148 (MQ=255)
                               cGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGat                                                                                                                <  2:1012302/148‑1 (MQ=255)
                               cGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGat                                                                                                                <  2:2608701/148‑1 (MQ=255)
                                gATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGata                                                                                                               <  1:3307334/148‑1 (MQ=255)
                                 aTGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGatat                                                                                                              >  2:2107004/1‑148 (MQ=255)
                                 aTGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGatat                                                                                                              >  2:2105223/1‑148 (MQ=255)
                                     cGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCt                                                                                                          <  1:1189019/148‑1 (MQ=255)
                                      ggCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTc                                                                                                         <  1:220830/148‑1 (MQ=255)
                                         gttaacgttaaACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGa                                                                                                      <  1:1219783/148‑1 (MQ=255)
                                              cgttaaACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATCTGGCTCAGATCGAc                                                                                                 >  2:1687088/1‑148 (MQ=255)
                                              cgttaaACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGAc                                                                                                 >  2:1153958/1‑148 (MQ=255)
                                                ttaaACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAg                                                                                               >  1:1460598/1‑148 (MQ=255)
                                                ttaaACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAg                                                                                               <  1:1350504/148‑1 (MQ=255)
                                                 taaACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGc                                                                                              >  2:3251832/1‑148 (MQ=255)
                                                  aaaCAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGcc                                                                                             <  2:2896215/148‑1 (MQ=255)
                                                  aaaCAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGcc                                                                                             >  2:794978/1‑148 (MQ=255)
                                                  aaaCAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGcc                                                                                             <  1:3282032/148‑1 (MQ=255)
                                                     cAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCcaca                                                                                          >  1:423073/1‑148 (MQ=255)
                                                     cAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCcaca                                                                                          >  2:2130356/1‑148 (MQ=255)
                                                      aGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCacac                                                                                         <  2:1645050/148‑1 (MQ=255)
                                                        gTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCg                                                                                       <  1:36048/148‑1 (MQ=255)
                                                         tCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCgg                                                                                      >  2:2015321/1‑148 (MQ=255)
                                                             aaCGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGt                                                                                  >  2:2743932/1‑148 (MQ=255)
                                                              aCGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTc                                                                                 >  2:2980441/1‑148 (MQ=255)
                                                              aCGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTc                                                                                 >  2:2263186/1‑148 (MQ=255)
                                                               cGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCa                                                                                <  1:2962400/148‑1 (MQ=255)
                                                                   ccATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCATAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTgg                                                                            >  2:2434315/1‑148 (MQ=255)
                                                                   ccATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTgg                                                                            >  1:716820/1‑148 (MQ=255)
                                                                         ccGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGat                                                                      >  1:1117097/1‑148 (MQ=255)
                                                                            gTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATc                                                                   <  1:1331227/148‑1 (MQ=255)
                                                                            gTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATc                                                                   <  1:1331482/148‑1 (MQ=255)
                                                                            gTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATc                                                                   <  2:1774585/148‑1 (MQ=255)
                                                                            gTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATc                                                                   <  1:1757867/148‑1 (MQ=255)
                                                                            gTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATc                                                                   <  2:2974029/148‑1 (MQ=255)
                                                                                      tACGCCTGTAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACagagag                                                         <  1:3183273/148‑1 (MQ=255)
                                                                                      tACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACagagag                                                         <  1:506161/148‑1 (MQ=255)
                                                                                         gCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGt                                                      <  2:2574093/148‑1 (MQ=255)
                                                                                          ccTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGtt                                                     >  1:1313980/1‑148 (MQ=255)
                                                                                          ccTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGtt                                                     <  2:1409385/148‑1 (MQ=255)
                                                                                           cTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTc                                                    <  1:1639242/148‑1 (MQ=255)
                                                                                           cTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTc                                                    <  2:3085095/148‑1 (MQ=255)
                                                                                                 agaTAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAAcc                                              >  1:2259417/1‑148 (MQ=255)
                                                                                                 agaTAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAAcc                                              <  2:1267784/148‑1 (MQ=255)
                                                                                                 agaTAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAAcc                                              <  1:2428330/148‑1 (MQ=255)
                                                                                                  gaTAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCt                                             >  1:219956/1‑148 (MQ=255)
                                                                                                   aTAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTg                                            >  1:885957/1‑148 (MQ=255)
                                                                                                    tAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGa                                           >  1:306090/1‑148 (MQ=255)
                                                                                                        aaCGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGc                                       >  1:2363989/1‑148 (MQ=255)
                                                                                                        aaCGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGc                                       <  2:3103934/148‑1 (MQ=255)
                                                                                                        aaCGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGc                                       >  1:1632136/1‑148 (MQ=255)
                                                                                                               tCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTggg                                <  2:854940/148‑1 (MQ=255)
                                                                                                                cTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGt                               >  2:2699686/1‑148 (MQ=255)
                                                                                                                cTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGt                               <  2:371220/148‑1 (MQ=255)
                                                                                                                  gcgcCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGttt                             >  1:2075359/1‑148 (MQ=255)
                                                                                                                    gcCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGttttt                           <  2:215462/148‑1 (MQ=255)
                                                                                                                        tCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACa                       >  2:1414786/1‑148 (MQ=255)
                                                                                                                         ccAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACag                      <  2:2486438/148‑1 (MQ=255)
                                                                                                                            gcgcCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGCGCGATATCATACAGAGAGAGGTCTGAACCTGAAGGCAGTTGGGTTTTTATCagtag                   >  2:2240323/1‑148 (MQ=255)
                                                                                                                             cgcCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTTGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACagtagt                  <  1:1821712/148‑1 (MQ=255)
                                                                                                                             cgcCGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACagtagt                  <  1:518794/148‑1 (MQ=255)
                                                                                                                                cGGAGTCGCATCTTCACCTGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCa               <  2:2754361/148‑1 (MQ=255)
                                                                                                                                cGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCa               <  1:2543375/148‑1 (MQ=255)
                                                                                                                                cGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCa               <  1:2254714/148‑1 (MQ=255)
                                                                                                                                cGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCa               <  1:2744982/148‑1 (MQ=255)
                                                                                                                                 ggAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCaa              <  1:1500923/148‑1 (MQ=255)
                                                                                                                                  gAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCAAg             <  2:2146919/148‑1 (MQ=255)
                                                                                                                                     tCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCAAgcgc          >  1:2821300/1‑148 (MQ=255)
                                                                                                                                     tCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCAAgcgc          <  1:1975266/148‑1 (MQ=255)
                                                                                                                                      cGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCAAGCGcc         >  1:2143544/1‑148 (MQ=255)
                                                                                                                                         aTCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCAAGCGCCTgg      <  2:423535/148‑1 (MQ=255)
                                                                                                                                         aTCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCAAGCGCCTgg      >  2:3114500/1‑148 (MQ=255)
                                                                                                                                             tCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCAAGCGCCTGGCCaa  >  1:1561746/1‑148 (MQ=255)
                                                                                                                                             tCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCAAGCGCCTGGCCaa  >  2:1888489/1‑148 (MQ=255)
                                                                                                                                                  |                                                                                                                                              
GTTTTCGCAACTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCATACCCGGTTTACGCGCTACGCCTGCAGAGATAAGAACGACATCTGCGCCTTCCAGCGCCGGAGTCGCATCTTCACCAGAAAAACCTTTGATTTTCACAGCAGTAGGGATATGGCTCAGATCGACAGCCACACCGGGAGTCACTGGAGCGATATCATACAGAGAGAGTTCTGAACCTGAAGGCAGTTGGGTTTTTAACAGTAGTGCAAGCGCCTGGCCAA  >  CP009273/3377305‑3377593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A