Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F121 I0 R1 856 273.6 9081716 94.1% 8545894 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,380,174 C→A 6.2% S458S (TCG→TCT)  aaeB ← p‑hydroxybenzoic acid efflux system component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,380,1740CA 6.2% 922.3 / 25.0 241S458S (TCG→TCT) aaeBp‑hydroxybenzoic acid efflux system component
Reads supporting (aligned to +/- strand):  ref base C (114/112);  new base A (8/7);  total (122/119)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 243 total aligned reads displayed.

GATTTATCCCGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAGCGCGGCCAGCGTCCCGTA  >  CP009273/3380028‑3380323
                                                                                                                                                   |                                                                                                                                                     
gATTTATCCCGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAg                                                                                                                                                    >  2:2979992/1‑150 (MQ=255)
  tttATCCCGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGcc                                                                                                                                                  <  1:839640/150‑1 (MQ=255)
    tATCCCGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCa                                                                                                                                                <  2:2641863/150‑1 (MQ=255)
      tCCCGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGt                                                                                                                                              <  1:1988843/150‑1 (MQ=255)
       cccGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTc                                                                                                                                             <  1:44528/150‑1 (MQ=255)
         cGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGc                                                                                                                                           >  2:649509/1‑150 (MQ=255)
           cACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCg                                                                                                                                         >  1:3668704/1‑150 (MQ=255)
           cACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCg                                                                                                                                         <  1:2135801/150‑1 (MQ=255)
             ccAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGtt                                                                                                                                       >  2:3110400/1‑150 (MQ=255)
             ccAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGtt                                                                                                                                       >  1:3927800/1‑150 (MQ=255)
             ccAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGtt                                                                                                                                       >  2:845569/1‑150 (MQ=255)
             ccAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGtt                                                                                                                                       >  2:589589/1‑150 (MQ=255)
                 cAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTg                                                                                                                                   <  1:515885/150‑1 (MQ=255)
                  aaaaTAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGt                                                                                                                                  >  2:2127424/1‑150 (MQ=255)
                  aaaaTAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGt                                                                                                                                  >  1:3235380/1‑150 (MQ=255)
                   aaaTAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTa                                                                                                                                 >  1:1921955/1‑150 (MQ=255)
                    aaTAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTAc                                                                                                                                >  2:3286534/1‑150 (MQ=255)
                     aTAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACt                                                                                                                               <  2:3551880/150‑1 (MQ=255)
                      tAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACtt                                                                                                                              <  1:1081227/150‑1 (MQ=255)
                        aCGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCt                                                                                                                            >  1:3883998/1‑150 (MQ=255)
                         cGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCta                                                                                                                           <  1:2479435/150‑1 (MQ=255)
                         cGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCta                                                                                                                           <  2:1031746/150‑1 (MQ=255)
                           gTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCtcta                                                                                                                         >  2:488665/1‑150 (MQ=255)
                              aaCGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCg                                                                                                                      <  2:1363145/150‑1 (MQ=255)
                                cgcgAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAg                                                                                                                    <  1:3708792/150‑1 (MQ=255)
                                  cgAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGga                                                                                                                  >  1:2581434/1‑150 (MQ=255)
                                         acaGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATcc                                                                                                           >  1:1832562/1‑150 (MQ=255)
                                         acaGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATcc                                                                                                           >  2:4298880/1‑150 (MQ=255)
                                           aGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCa                                                                                                         <  1:1801759/150‑1 (MQ=255)
                                            gCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAg                                                                                                        >  1:2659397/1‑150 (MQ=255)
                                             ccGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGc                                                                                                       <  1:3494252/150‑1 (MQ=255)
                                                  gaTTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGc                                                                                                  >  2:2673090/1‑150 (MQ=255)
                                                   aTTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGcc                                                                                                 >  1:750977/1‑150 (MQ=255)
                                                    tttGCCCTAATGAGCTGTCGAGAAACTGACTGAAATTGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCa                                                                                                <  1:3095458/150‑1 (MQ=255)
                                                     ttGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAg                                                                                               <  1:2918025/150‑1 (MQ=255)
                                                               gcgcTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGcac                                                                                     <  1:1808002/150‑1 (MQ=255)
                                                                cgcTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGcaca                                                                                    >  2:2280886/1‑150 (MQ=255)
                                                                   tGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTCATGCAcagca                                                                                 >  1:1634863/1‑150 (MQ=255)
                                                                       gagaAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCaa                                                                             >  2:2778072/1‑150 (MQ=255)
                                                                       gagaAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCaa                                                                             <  2:2026632/150‑1 (MQ=255)
                                                                        agaAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAAc                                                                            <  1:640619/150‑1 (MQ=255)
                                                                        agaAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAAc                                                                            <  1:641415/150‑1 (MQ=255)
                                                                          aaaCTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACAt                                                                          <  1:2542119/150‑1 (MQ=255)
                                                                          aaaCTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACAt                                                                          <  2:904257/150‑1 (MQ=255)
                                                                          aaaCTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACAt                                                                          <  2:1842784/150‑1 (MQ=255)
                                                                            actgactgAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGc                                                                        >  1:4364928/1‑150 (MQ=255)
                                                                             ctgactgaAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGct                                                                       >  1:1016964/1‑150 (MQ=255)
                                                                             ctgactgaAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGct                                                                       <  2:4026349/150‑1 (MQ=255)
                                                                              tgactgaAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGctc                                                                      >  2:3033629/1‑150 (MQ=255)
                                                                               gactgaAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTCATGCACAGCAGCAACATGctct                                                                     >  2:17389/1‑150 (MQ=255)
                                                                               gactgaAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGctct                                                                     >  2:530387/1‑150 (MQ=255)
                                                                                 ctgaAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGt                                                                   <  1:437354/150‑1 (MQ=255)
                                                                                 ctgaAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGt                                                                   <  2:1084848/150‑1 (MQ=255)
                                                                                    aaaTGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATACCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTgg                                                                >  2:886157/1‑150 (MQ=255)
                                                                                     aaTGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTggg                                                               <  1:104655/150‑1 (MQ=255)
                                                                                      agggAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGt                                                              <  2:3981604/148‑1 (MQ=255)
                                                                                        ggAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTAt                                                            <  2:4145994/150‑1 (MQ=255)
                                                                                          aaaGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTa                                                          >  2:3728137/1‑150 (MQ=255)
                                                                                          aaaGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGACGCCGTTTCAGTAATTCAATACCGAGGAACAATCCCATCACAGCCAGGCTAATGCACAGCAGCAACAAGCTCTGTTGGGTATTa                                                          >  1:896255/1‑150 (MQ=255)
                                                                                           aaGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAg                                                         <  1:1338339/150‑1 (MQ=255)
                                                                                             gTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTTGGTATTAggg                                                       >  2:3097290/1‑150 (MQ=255)
                                                                                             gTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAggg                                                       >  2:4213913/1‑150 (MQ=255)
                                                                                             gTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATACCAGCACAGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAggg                                                       >  1:451614/1‑150 (MQ=255)
                                                                                              tCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGa                                                      <  2:1921955/150‑1 (MQ=255)
                                                                                               cATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCCGCAACATGCTCAGTTGGGTATTAGGGAt                                                     >  1:4201838/1‑150 (MQ=255)
                                                                                               cATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGAt                                                     <  1:1520364/150‑1 (MQ=255)
                                                                                                  cGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAAt                                                  <  1:1805824/150‑1 (MQ=255)
                                                                                                   gggTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATc                                                 <  1:4470542/150‑1 (MQ=255)
                                                                                                    ggTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCa                                                >  2:933139/1‑150 (MQ=255)
                                                                                                     gTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCAc                                               <  2:286133/150‑1 (MQ=255)
                                                                                                       tATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCCGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCa                                             >  2:3477314/1‑150 (MQ=255)
                                                                                                        aTCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCaa                                            >  2:2891264/1‑150 (MQ=255)
                                                                                                           cAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCaaaaa                                         >  1:2098117/1‑150 (MQ=255)
                                                                                                           cAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCaaaaa                                         >  1:4372816/1‑150 (MQ=255)
                                                                                                           cAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCaaaaa                                         >  1:2232504/1‑150 (MQ=255)
                                                                                                           cAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCaaaaa                                         >  2:3381047/1‑150 (MQ=255)
                                                                                                               aCGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTag                                     <  1:4320824/150‑1 (MQ=255)
                                                                                                                cGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTaga                                    <  1:2798066/150‑1 (MQ=255)
                                                                                                                 gATAATATTTATGGTGCTGGCCAGTG‑CACCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTTGGTATTAGGGATAATCACCAAAAAGTagag                                   <  1:3336683/150‑1 (MQ=255)
                                                                                                                   taataTTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGagca                                 <  2:3235380/150‑1 (MQ=255)
                                                                                                                    aataTTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGagcag                                <  2:3927800/150‑1 (MQ=255)
                                                                                                                    aataTTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGagcag                                <  2:2448106/150‑1 (MQ=255)
                                                                                                                     atatGTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGagcagc                               <  2:2016600/150‑1 (MQ=255)
                                                                                                                      tatTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGcc                              >  1:898606/1‑150 (MQ=255)
                                                                                                                      tatTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTATATACCGAGGAAGAATCCCACCACTGCCAGGCGAATGCACAGCAGCAACATGCTCTGTTGGGTCTTATGGATAATCACCAAAAAGTAGAGCAGcc                              >  1:1235299/1‑150 (MQ=255)
                                                                                                                        tttATGGTGCTGGCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCt                            <  2:2741781/150‑1 (MQ=255)
                                                                                                                            tGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACg                        >  2:255324/1‑150 (MQ=255)
                                                                                                                             ggTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACgg                       <  2:4524749/150‑1 (MQ=255)
                                                                                                                              gTGCTGGCCAGTGCCCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCAATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACgg                       >  1:3776160/1‑150 (MQ=255)
                                                                                                                              gTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTTTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGc                      >  2:240799/1‑150 (MQ=255)
                                                                                                                              gTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGc                      <  2:2310623/150‑1 (MQ=255)
                                                                                                                                gCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAg                    <  2:4104164/150‑1 (MQ=255)
                                                                                                                                   ggCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCCGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAgcgc                 >  2:3173540/1‑150 (MQ=255)
                                                                                                                                   ggCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGTTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAgcgc                 <  2:114528/150‑1 (MQ=255)
                                                                                                                                    gCCAGTG‑CCCCCATAGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAGcgcg                >  2:1976640/1‑150 (MQ=255)
                                                                                                                                      cAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAGCGCGGc              >  1:1682797/1‑150 (MQ=255)
                                                                                                                                      cAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATAACGAGGAAGAATCCCAGCACTGCCAGGCTAAAGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATAACCAAAAAGTAGAGCAGCCCTAACGGCAGCGCGGc              >  1:617691/1‑150 (MQ=255)
                                                                                                                                               ccATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAGCGCGGCCAGCGTcc      <  1:3221294/150‑1 (MQ=255)
                                                                                                                                                 aTCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAGCGCGGCCAGCGTCCCg    >  2:2640670/1‑150 (MQ=255)
                                                                                                                                                   cGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAGCGCGGCCAGCGTCCCGTa  >  2:1547387/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
GATTTATCCCGCACCAGCAAAATAACGGTGAACGCGAGCACACAGCCGACGATTTGCCCTAATGCGCTGTCGAGAAACTGACTGAAATGGAAAGTCATCGGGTTATCCAGCACGATAATATTTATGGTGCTGGCCAGTG‑CCCCCATCGAGCCCAGTCGCCGTTTCTGTACTTCTATACCGAGGAAGAATCCCAGCACTGCCAGGCTAATGCACAGCAGCAACATGCTCTGTTGGGTATTAGGGATAATCACCAAAAAGTAGAGCAGCCCTAACGGCAGCGCGGCCAGCGTCCCGTA  >  CP009273/3380028‑3380323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A