Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F394 I0 R1
|
1342 |
215.0 |
7134094 |
96.2% |
6862998 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
4,244,663 |
G→T |
49.3% |
H578N (CAC→AAC) |
plsB ← |
glycerol‑3‑phosphate O‑acyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 4,244,663 | 0 | G | T | 49.3%
| 91.3
/ 227.8
| 176 | H578N (CAC→AAC) | plsB | glycerol‑3‑phosphate O‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (48/41); new base T (44/43); total (92/84) |
| Fisher's exact test for biased strand distribution p-value = 7.63e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 177 total aligned reads displayed.
TGCCGCCATCAGCGAAGGCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACGTGATGCCAGTAGCGCAGTACA > CP009273/4244520‑4244810
|
gccgccATCAGCGAAGGCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCTCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGa < 2:3527923/148‑1 (MQ=255)
cgccATCAGCGAAGGCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATa < 1:217790/148‑1 (MQ=255)
ccATCAGCGAAGGCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAg < 1:326052/148‑1 (MQ=255)
cATCAGCGAAGGCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATaa > 1:353860/1‑146 (MQ=255)
cATCAGCGAAGGCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATaa < 2:353860/146‑1 (MQ=255)
aTCAGCGAAGGCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCt > 2:3430640/1‑148 (MQ=255)
aGCGAAGGCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTcgc < 2:3097654/148‑1 (MQ=255)
gCGAAGGCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTcgct > 1:1445881/1‑148 (MQ=255)
cGAAGGCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTcgctg < 2:3269425/148‑1 (MQ=255)
aaGGCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTcgctggc > 1:575985/1‑148 (MQ=255)
ggCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTcgctggcgc > 2:575608/1‑148 (MQ=255)
ggCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTcgctggcgc > 2:1944472/1‑148 (MQ=255)
ggCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTcgctggcgc < 1:3222423/148‑1 (MQ=255)
ggCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTcgctggcgc < 1:3223083/148‑1 (MQ=255)
cagtaCCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGCCAGAATGATGATGTCGCCGATTGTGTCTTTATCGACTTCATACTTGTTCAGTTGCAGCGCGTTATCTATAAGATcgctggcgctg > 2:2683138/1‑148 (MQ=255)
caCCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCgctggct < 1:703722/148‑1 (MQ=255)
cAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGaa < 2:2383370/148‑1 (MQ=255)
aCATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAgt > 1:2969193/1‑147 (MQ=255)
aCATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAgg > 1:3341296/1‑148 (MQ=255)
cATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGa < 1:2612820/148‑1 (MQ=255)
cATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGa > 2:2500225/1‑148 (MQ=255)
atatGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGaa > 1:1396458/1‑148 (MQ=255)
atatGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGaa > 1:408199/1‑148 (MQ=255)
tatGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAAc > 1:2341603/1‑148 (MQ=255)
tatGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAAc < 1:3013518/148‑1 (MQ=255)
atGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACg > 1:2853448/1‑148 (MQ=255)
aaTGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATACGCTCGCTGGCGCTGGCTGAAGGAACGGTagag < 1:1969155/148‑1 (MQ=255)
aaTGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTagag < 1:3405121/148‑1 (MQ=255)
aTGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGt > 1:2742076/1‑148 (MQ=255)
aTGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGt < 2:3003174/148‑1 (MQ=255)
gttgttGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTcc < 2:841891/148‑1 (MQ=255)
gttgttGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTcc > 1:2436712/1‑148 (MQ=255)
cGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGt < 1:2734782/148‑1 (MQ=255)
cGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGt < 2:600692/148‑1 (MQ=255)
aTAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAg < 2:1672641/148‑1 (MQ=255)
tagtagGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAgg > 2:1014350/1‑148 (MQ=255)
tagtagGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGAGTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAgg > 2:3129249/1‑148 (MQ=255)
agtagGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAggg > 2:1769495/1‑148 (MQ=255)
gtagGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGc > 2:2877755/1‑148 (MQ=255)
tagGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCa > 2:2895021/1‑148 (MQ=255)
gTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGt > 2:325284/1‑148 (MQ=255)
tcatcaGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTCGGGCACGtt > 2:3168082/1‑148 (MQ=255)
tcatcaGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGtt > 2:2663754/1‑148 (MQ=255)
catcaGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTg < 2:2014725/148‑1 (MQ=255)
catcaGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTg > 1:833581/1‑148 (MQ=255)
catcaGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTg < 1:1273977/148‑1 (MQ=255)
catcaGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTg < 1:556593/148‑1 (MQ=255)
catcaGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTg < 1:1089482/148‑1 (MQ=255)
catcaGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTg > 2:1782734/1‑148 (MQ=255)
catcaGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGCCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTg > 2:2223504/1‑148 (MQ=255)
atcaGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTgc > 2:226016/1‑148 (MQ=255)
gCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCAt < 2:2409347/148‑1 (MQ=255)
cGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGa < 1:3084342/148‑1 (MQ=255)
cGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGa < 1:1308678/148‑1 (MQ=255)
cTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATc < 2:782926/148‑1 (MQ=255)
ttGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATcc < 2:3134167/148‑1 (MQ=255)
ttGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGGTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATcc > 1:385523/1‑148 (MQ=255)
tGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCa > 1:2767911/1‑148 (MQ=255)
tGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCa > 1:1685439/1‑148 (MQ=255)
tCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGt < 2:1764498/148‑1 (MQ=255)
cgcgGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGGCTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGc > 1:3302581/1‑148 (MQ=255)
cgcgGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGc < 1:2727437/148‑1 (MQ=255)
gcgGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCa < 2:3197076/148‑1 (MQ=255)
cAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATcc > 2:18088/1‑136 (MQ=255)
cAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATcc < 1:18088/136‑1 (MQ=255)
aaTGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCagttgagt > 2:3056806/1‑148 (MQ=255)
tgatgatgTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCagttgagttg < 1:3522736/148‑1 (MQ=255)
gTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGtt > 1:78152/1‑148 (MQ=255)
tCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTa < 2:1443607/148‑1 (MQ=255)
tCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTa < 2:1445881/148‑1 (MQ=255)
cGATTTTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCACGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTg > 2:571187/1‑148 (MQ=255)
cGATTGTGTCTTTCTCGACTTCTAGCTTGTTCATTGGCAGCGCGTTATCGTTAAGCTCGCTGGCGCGGGGTGTAGGAACGGGTGAGTCGGGGGCGTAGGGCACGTTGCGCAGCAGATCCAGGTCGCGGGTGAGTTGCTCGGGTACCTg > 2:571042/1‑148 (MQ=255)
cGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTg < 2:2066902/148‑1 (MQ=255)
tgtgTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTcg > 2:3459516/1‑148 (MQ=255)
tgtgTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTcg > 2:3459623/1‑148 (MQ=255)
tgtgTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTcg > 2:505140/1‑148 (MQ=255)
tCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCggg < 2:2853448/148‑1 (MQ=255)
cTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGgt < 1:1660766/148‑1 (MQ=255)
tctcGACTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGgtgag < 2:1540364/148‑1 (MQ=255)
tcGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGgtgagtg > 1:2660281/1‑148 (MQ=255)
aCTTCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAgc > 1:1508402/1‑148 (MQ=255)
cTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAgcg > 1:494045/1‑148 (MQ=255)
cTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAgcg < 1:3129249/148‑1 (MQ=255)
ttCAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAgcgc > 1:78741/1‑148 (MQ=255)
cAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTg < 1:2122168/148‑1 (MQ=255)
cAAACTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTg < 1:325284/148‑1 (MQ=255)
aCTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACg > 2:2622333/1‑148 (MQ=255)
aCTTGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACg > 2:2252092/1‑148 (MQ=255)
aCTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACg < 2:1949595/148‑1 (MQ=255)
cTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACGt < 2:2436890/148‑1 (MQ=255)
ttGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACGTg > 1:2828923/1‑148 (MQ=255)
tGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACGTGa < 2:2534959/148‑1 (MQ=255)
tGTTCATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACGTGa < 1:252261/148‑1 (MQ=255)
cATTTGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACGTGATGcc > 1:2849497/1‑148 (MQ=255)
tttGCAGCGCGTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACGTGATGCCAg > 1:826950/1‑148 (MQ=255)
tttGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACGTGATGCCAg < 1:2500225/148‑1 (MQ=255)
tttGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACGTGATGCCAg > 2:2118768/1‑148 (MQ=255)
cgcgTTATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACGTGATGCCAGTAGCGCa > 1:1268099/1‑148 (MQ=255)
cgcgTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACGTGATGCCAGTAGCGCa < 1:1208553/148‑1 (MQ=255)
cgcgTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACGTGATGCCAGTAGCGCa < 1:1205423/148‑1 (MQ=255)
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TGCCGCCATCAGCGAAGGCAGCACCAACATATGCGCAATGTTGTTGCGATAGTAGGTCATCAGCACCGCTTGCTCGCGCGGCAGAATGATGATGTCGCCGATTGTGTCTTTCTCGACTTCAAACTTGTTCATTTGCAGCGCGTGATCGATAAGCTCGCTGGCGCTGGCTGAAGGAACGGTAGAGTCCGTGGAGTAGGGCACGTTGCGCATCAGATCCAGGTAGCAGTTGAGTTGCTCGGTTAACTGCTCGCGGGTGAGTGAGCGCTGACGTGATGCCAGTAGCGCAGTACA > CP009273/4244520‑4244810
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
