Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F142 I0 R1
|
859 |
274.6 |
8723680 |
96.4% |
8409627 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,386,672 |
C→A |
9.0% |
P982P (CCG→CCT) |
yhdP ← |
DUF3971‑AsmA2 domains protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,386,672 | 0 | C | A | 9.0%
| 971.7
/ 50.1
| 266 | P982P (CCG→CCT) | yhdP | DUF3971‑AsmA2 domains protein |
| Reads supporting (aligned to +/- strand): ref base C (122/120); new base A (16/8); total (138/128) |
| Fisher's exact test for biased strand distribution p-value = 1.40e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 271 total aligned reads displayed.
GTATCAATCAGTCCATTGGTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCTTCAACCAGGGTGCC > CP009273/3386523‑3386821
|
gTATCAATCAGTCCATTGGTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTc < 1:2174977/150‑1 (MQ=255)
tcaatcaGTCCATTGGTAAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCggg < 1:1969564/150‑1 (MQ=255)
caatcaGTCCATTGGTCAGCGTTAACGTATCGCCCGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGa > 2:2893121/1‑150 (MQ=255)
aatcaGTCCATTGGTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGaa < 1:2853202/150‑1 (MQ=255)
aatcaGTCCATTGGTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGaa > 2:3419869/1‑150 (MQ=255)
aatcaGTCCATTGGTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGaa < 2:1068081/150‑1 (MQ=255)
caGTCCATTGGTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGACAgg > 1:3324727/1‑150 (MQ=255)
aGTCCATTGGTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGt > 1:1821586/1‑150 (MQ=255)
gTCCATTGGTCATCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACAGAATTTTTTACCCCAGAACCAGCACTCTGTGCATCGTATTTTGTCGTCAGGCCAGCCACGGAAGTTAATGCGCTCCGTAGTCGGGAAAGGtg > 1:3034298/1‑150 (MQ=255)
gTCCATTGGTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCATCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGtg < 2:801599/150‑1 (MQ=255)
tCCATTGGTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGtga > 2:3960483/1‑150 (MQ=255)
cATTGGTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGACTTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGtgatg < 2:1405893/150‑1 (MQ=255)
cATTGGTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGtgatg > 1:989601/1‑150 (MQ=255)
aTTGGTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGtgatga > 2:1855436/1‑150 (MQ=255)
ttGGTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGAc > 2:1175074/1‑150 (MQ=255)
gTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGc < 1:2658574/150‑1 (MQ=255)
tCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCg < 2:3745642/150‑1 (MQ=255)
tCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCg > 2:3183436/1‑150 (MQ=255)
gTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGaa > 1:250154/1‑150 (MQ=255)
tAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATc > 2:2549227/1‑150 (MQ=255)
tAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTAGGGAAAGGTGATGACGGCGTTGAATc > 1:3551810/1‑150 (MQ=255)
aaCGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATca < 1:544644/150‑1 (MQ=255)
tATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGACACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATcaccac > 2:3969107/1‑150 (MQ=255)
cAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTAGGGAAAGGTGATGACGGCGTTGAATCACCACGAGttt > 2:3361751/1‑150 (MQ=255)
tatCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCg > 1:3197768/1‑150 (MQ=255)
atCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGGTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCgg > 2:772153/1‑150 (MQ=255)
atCACTGTCAATGCGACCGAATTTGTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCgg < 2:3008693/150‑1 (MQ=255)
tCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCggg < 2:3057755/150‑1 (MQ=255)
tCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCggg < 2:3915046/150‑1 (MQ=255)
cACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGt < 1:4215946/150‑1 (MQ=255)
aCTGTCAATGCGACCGAATTTTTGCCCCCAGACCCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGtt < 1:4324080/150‑1 (MQ=255)
cTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCATCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTg < 1:1227500/150‑1 (MQ=255)
tGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGt < 2:3836102/150‑1 (MQ=255)
gTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGta < 2:3715233/150‑1 (MQ=255)
gTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGta > 1:2228412/1‑150 (MQ=255)
gTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGta > 1:1424990/1‑150 (MQ=255)
tCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGtaa < 2:2194714/150‑1 (MQ=255)
aaTGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGtaata > 1:1336454/1‑150 (MQ=255)
gACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTAGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGat < 1:3702009/150‑1 (MQ=255)
aCCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGata > 2:581461/1‑150 (MQ=255)
cGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATAtt < 2:2223194/150‑1 (MQ=255)
cGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATAtt > 2:164070/1‑150 (MQ=255)
gAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATAttt > 1:1593019/1‑150 (MQ=255)
tttttGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGat < 1:3251624/150‑1 (MQ=255)
tttttGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGat < 2:2480900/150‑1 (MQ=255)
ttGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATAtt < 1:3577146/150‑1 (MQ=255)
tGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTc > 1:2934131/1‑150 (MQ=255)
gCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCg < 2:4008753/150‑1 (MQ=255)
ccAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCgccag < 1:3496239/150‑1 (MQ=255)
cAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCCCGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCgccagc > 2:947145/1‑150 (MQ=255)
cAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCgccagc > 1:2381746/1‑150 (MQ=255)
aGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCgccagcc > 1:1637697/1‑150 (MQ=255)
aaCCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCAc < 2:1394923/150‑1 (MQ=255)
ccAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACgg > 2:1812258/1‑150 (MQ=255)
aGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGgcg < 2:2165288/150‑1 (MQ=255)
aGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGgcg > 1:2943755/1‑150 (MQ=255)
gCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGgcgc > 1:1060605/1‑150 (MQ=255)
gCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGgcgc > 1:113288/1‑150 (MQ=255)
cACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGcgcg > 1:769851/1‑150 (MQ=255)
cACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGcgcg > 1:137243/1‑150 (MQ=255)
cACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGcgcg > 1:137336/1‑150 (MQ=255)
cACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGcgcg > 2:2777803/1‑150 (MQ=255)
ctGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGttat < 2:1514160/150‑1 (MQ=255)
tgCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTAc < 1:373293/150‑1 (MQ=255)
tgCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTAc < 1:374745/150‑1 (MQ=255)
aTCGTATTTGGGTGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCG‑CAGCCACGGCGCGTTATTACGCAt > 2:534847/1‑150 (MQ=255)
gTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCg < 2:4361472/150‑1 (MQ=255)
gTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCg < 2:1821586/150‑1 (MQ=255)
gTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCg < 2:367936/150‑1 (MQ=255)
tttGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTa < 1:3999259/150‑1 (MQ=255)
ttGGGCGTCCGGCCAGCCACGGAAGTTAACGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAg > 1:1718583/1‑150 (MQ=255)
ccGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGt < 1:1195393/150‑1 (MQ=255)
cGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGtt > 1:4059313/1‑150 (MQ=255)
cGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGtt > 2:3180470/1‑150 (MQ=255)
ggCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTg > 1:2556118/1‑150 (MQ=255)
cagccaCGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGAtt > 1:1088698/1‑150 (MQ=255)
cagccaCGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGAtt > 2:2593498/1‑150 (MQ=255)
agccaCGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGAttt > 1:166144/1‑150 (MQ=255)
agccaCGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGAttt < 1:2327516/150‑1 (MQ=255)
ccaCGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCa < 1:1863777/150‑1 (MQ=255)
caCGGAAGTTAATGCGCTCCGTTGTAGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCAc > 2:4099880/1‑150 (MQ=255)
aCGGAAGTTAATGCGCTCCGTTGTAGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACg > 2:2816447/1‑150 (MQ=255)
gAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGccc < 2:650547/150‑1 (MQ=255)
aaGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCt > 2:3898678/1‑150 (MQ=255)
aaGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCt > 2:3461678/1‑150 (MQ=255)
aaGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGAGATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCt > 2:1897991/1‑150 (MQ=255)
tAATGCGCTCCGTTGTCGGGACAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTgcg < 2:3313018/150‑1 (MQ=255)
aTGCGCTCCGTTGTAGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCt > 2:3148397/1‑150 (MQ=255)
aTGCGCTCCGTTGTAGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCt > 2:4252544/1‑150 (MQ=255)
gcTCCGTTGTAGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCTTCaa > 1:926533/1‑150 (MQ=255)
gcTCCGTTGTAGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCTTCaa > 1:3111774/1‑150 (MQ=255)
cTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCTTCAAc < 2:4256627/150‑1 (MQ=255)
cTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCTTCAAc < 2:1244075/150‑1 (MQ=255)
ccGTTGTAGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCTTCAACCa < 1:2091862/150‑1 (MQ=255)
gTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCTTCAACCAgg > 2:917183/1‑150 (MQ=255)
ttGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCTTCAACCAggg < 2:1340664/150‑1 (MQ=255)
ttGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCTTCAACCAggg < 2:689173/150‑1 (MQ=255)
ttGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCTTCAACCAggg < 2:2034809/150‑1 (MQ=255)
gTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCTTCAACCAGGGTg < 1:3180470/150‑1 (MQ=255)
gTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCTTCAACCAGGGTg > 2:1745711/1‑150 (MQ=255)
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GTATCAATCAGTCCATTGGTCAGCGTTAACGTATCGCCAGAAATGGTGATATCACTGTCAATGCGACCGAATTTTTGCCCCCAGAACCAGCACTCTGTGCATCGTATTTGGGCGTCCGGCCAGCCACGGAAGTTAATGCGCTCCGTTGTCGGGAAAGGTGATGACGGCGTTGAATCACCACGAGTTTTCGCCACGCTCGGGTTGTAATAAAGATATTTGATATTCGCCAGCCACGGCGCGTTATTACGCATCGCTAGCGTGGCGTTGATTTCACGCCCTTGCGCTTCAACCAGGGTGCC > CP009273/3386523‑3386821
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
