Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F534 I1 R1
|
1235 |
230.2 |
7611948 |
95.1% |
7238962 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009273 |
4,210,753 |
C→A |
E555* (GAA→TAA) |
arpA ← |
ankyrin repeat protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 4,210,753 | 0 | C | A | 100.0%
| 595.5
/ NA
| 181 | E555* (GAA→TAA) | arpA | ankyrin repeat protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (93/88); total (93/88) |
Only 100 of 181 total aligned reads displayed.
CGTATTAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGC > CP009273/4210607‑4210899
|
cGTATTAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTg < 2:841662/150‑1 (MQ=255)
gTATTAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTgg > 1:997315/1‑150 (MQ=255)
ttAAACAGAGTTGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCt < 2:2199787/150‑1 (MQ=255)
ttAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCt < 2:93528/150‑1 (MQ=255)
tAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTa < 1:2967579/150‑1 (MQ=255)
aaCAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAgg < 2:2046870/150‑1 (MQ=255)
aaCAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAgg < 2:137087/150‑1 (MQ=255)
aaCAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAgg < 2:3384314/150‑1 (MQ=255)
aCAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGc > 1:1986920/1‑150 (MQ=255)
cAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCt < 1:1466203/150‑1 (MQ=255)
agagTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTg > 2:1017936/1‑150 (MQ=255)
agTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTggg > 1:814415/1‑150 (MQ=255)
tAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGc > 1:318524/1‑150 (MQ=255)
aaTGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCt < 2:511399/150‑1 (MQ=255)
tGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTc > 2:1842505/1‑150 (MQ=255)
cGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCaa > 1:1525396/1‑150 (MQ=255)
ttAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGa > 2:2839646/1‑150 (MQ=255)
aaaTAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATaa < 2:3725061/150‑1 (MQ=255)
aTAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACt > 1:3640243/1‑150 (MQ=255)
aTAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACt > 2:2303937/1‑150 (MQ=255)
aGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACttt > 1:1665636/1‑150 (MQ=255)
aGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGAACTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACttt > 1:877569/1‑150 (MQ=255)
gTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTc > 2:1761166/1‑150 (MQ=255)
aTTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCAc > 1:550071/1‑150 (MQ=255)
aataaCGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGat < 1:785057/150‑1 (MQ=255)
aataaCGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGat < 2:610551/150‑1 (MQ=255)
ataaCGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGata < 1:65962/150‑1 (MQ=255)
taaCGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGatat < 2:1280156/150‑1 (MQ=255)
aaCGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATc < 2:1597660/150‑1 (MQ=255)
aCGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCg > 1:267870/1‑150 (MQ=255)
aCGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCg > 1:2176420/1‑150 (MQ=255)
cGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGc > 2:2353563/1‑150 (MQ=255)
gTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCt > 2:3656966/1‑150 (MQ=255)
aTGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGt > 2:106252/1‑150 (MQ=255)
aTGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGt > 1:1857813/1‑150 (MQ=255)
tgtCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCa > 1:2275982/1‑150 (MQ=255)
cgcgCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCAtttt > 1:1050197/1‑150 (MQ=255)
gcgcTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTg < 2:2789483/150‑1 (MQ=255)
gcTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCa > 2:3102694/1‑150 (MQ=255)
cttcATGGACATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCAt < 2:2091623/147‑1 (MQ=255)
cTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCAt < 2:3375003/150‑1 (MQ=255)
gCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGCCCATTTTGCATCGCCAGa < 1:3446210/150‑1 (MQ=255)
tAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGAtata > 2:3030213/1‑150 (MQ=255)
aaacaaacCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAg > 2:1722937/1‑150 (MQ=255)
acaaacCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTc < 1:2551495/150‑1 (MQ=255)
aacCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTg > 1:1240960/1‑150 (MQ=255)
cGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCa < 2:3750975/150‑1 (MQ=255)
gtgtCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCaa > 2:1152753/1‑150 (MQ=255)
gtCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAAcc < 2:550071/150‑1 (MQ=255)
cgcgcgCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCAt > 2:40000/1‑150 (MQ=255)
gcgcgcAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCAtc < 1:738872/150‑2 (MQ=255)
gcgcAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATaaa > 1:3378455/1‑150 (MQ=255)
gcAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATaaaaa > 2:801318/1‑150 (MQ=255)
cAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAAt > 1:77253/1‑150 (MQ=255)
cAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAAt < 1:1842505/150‑1 (MQ=255)
aaGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATc < 1:1095506/150‑1 (MQ=255)
aaGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATc > 2:3428069/1‑150 (MQ=255)
aGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATcc > 1:1949952/1‑150 (MQ=255)
gACTTTTAGCGGTCAGAAGATCTACAATATCGTAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCt < 1:1179168/150‑1 (MQ=255)
cTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCttt < 2:318524/150‑1 (MQ=255)
cTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCttt < 2:455963/150‑1 (MQ=255)
ttttAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTg > 2:1394025/1‑150 (MQ=255)
ttttAGCGGTCAGAAGATCTACAAGATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTg < 2:2710658/150‑1 (MQ=255)
ttAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGcc < 2:3420671/150‑1 (MQ=255)
ttAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGcc > 2:3793582/1‑150 (MQ=255)
ttAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATGTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTGTGcc > 2:3471325/1‑150 (MQ=255)
aGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCtt > 1:465104/1‑150 (MQ=255)
gCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTc < 2:1583877/150‑1 (MQ=255)
ggTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAg < 1:1330629/150‑1 (MQ=255)
ggTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAg > 2:1460098/1‑150 (MQ=255)
ggTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAg < 2:2425662/150‑1 (MQ=255)
ggTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAg > 2:1873650/1‑150 (MQ=255)
ggTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTACATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAg < 1:3230965/150‑1 (MQ=255)
tCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGga < 2:1704643/150‑1 (MQ=255)
cAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGgag < 1:281943/150‑1 (MQ=255)
agaagaTCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGgaga < 1:2271573/150‑1 (MQ=255)
aagaTCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATc > 1:1716744/1‑150 (MQ=255)
aagaTCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATc < 1:2839646/150‑1 (MQ=255)
aagaTCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATc < 2:1965279/150‑1 (MQ=255)
agaTCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCg > 1:2065509/1‑150 (MQ=255)
cTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTa < 1:3124467/150‑1 (MQ=255)
cTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTa < 1:1226883/150‑1 (MQ=255)
aaTATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTg > 2:224877/1‑150 (MQ=255)
atCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTc > 1:2155755/1‑150 (MQ=255)
atCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTc > 1:3330100/1‑150 (MQ=255)
atCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTc > 2:1968994/1‑150 (MQ=255)
atCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTc > 1:1797651/1‑150 (MQ=255)
tCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCt < 2:1986920/150‑1 (MQ=255)
tCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACATTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCt > 1:130224/1‑150 (MQ=255)
cGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCtt > 2:2096611/1‑150 (MQ=255)
cGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCtt < 2:2420683/150‑1 (MQ=255)
aaGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAg < 1:428986/150‑1 (MQ=255)
aaGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAg > 1:1865732/1‑150 (MQ=255)
aGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGt < 1:380832/150‑1 (MQ=255)
gCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTc < 1:2741409/150‑1 (MQ=255)
tGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACTATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCaa > 2:1937622/1‑150 (MQ=255)
aaaTGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAAt < 1:1722937/150‑1 (MQ=255)
aTGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGa < 2:465104/150‑1 (MQ=255)
gTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACa > 2:2511951/1‑150 (MQ=255)
tttACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGc < 1:2394226/150‑1 (MQ=255)
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CGTATTAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGC > CP009273/4210607‑4210899
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAACGTATTAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAA > CP009273/4210604‑4210902
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AAACGTATTAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCCGAAATGTTAATTTA < SRR19973061.2355338/150‑1 (MQ=60)
GTATTAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGG > SRR19973061.999859/1‑150 (MQ=60)
TAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTA < SRR19973061.2975235/150‑1 (MQ=60)
ACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGC > SRR19973061.1991894/1‑150 (MQ=60)
CAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCT < SRR19973061.1470020/150‑1 (MQ=60)
CAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCT < SRR19973061.1469892/150‑1 (MQ=60)
GAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGG > SRR19973061.701165/1‑150 (MQ=60)
AGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGG > SRR19973061.816544/1‑150 (MQ=60)
GTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGC < SRR19973061.789172/150‑1 (MQ=60)
TAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGC > SRR19973061.319353/1‑150 (MQ=60)
AATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCT < SRR19973061.1234577/150‑1 (MQ=60)
ATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTT > SRR19973061.3175290/1‑150 (MQ=60)
CGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAA > SRR19973061.1529205/1‑150 (MQ=60)
ATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACT > SRR19973061.3649549/1‑150 (MQ=60)
TAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTT > SRR19973061.177373/1‑150 (MQ=60)
AGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTT > SRR19973061.1669818/1‑150 (MQ=60)
AGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGAACTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTT > SRR19973061.879845/1‑150 (MQ=60)
TATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCA < SRR19973061.2084218/150‑1 (MQ=60)
ATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCAC > SRR19973061.551521/1‑150 (MQ=60)
AATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGAT < SRR19973061.787121/150‑1 (MQ=60)
ATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATA < SRR19973061.66209/150‑1 (MQ=60)
AACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATC > SRR19973061.3607908/1‑150 (MQ=60)
ACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCG > SRR19973061.268607/1‑150 (MQ=60)
ACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCG > SRR19973061.2181890/1‑150 (MQ=60)
CATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATG > SRR19973061.2845005/1‑150 (MQ=60)
CATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATG < SRR19973061.2009459/150‑1 (MQ=60)
ATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGT > SRR19973061.1862451/1‑150 (MQ=60)
ATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGT > SRR19973061.1862495/1‑150 (MQ=60)
TGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCA > SRR19973061.46632/1‑150 (MQ=60)
TGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCA > SRR19973061.2281726/1‑150 (MQ=60)
CGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTT > SRR19973061.1052894/1‑150 (MQ=60)
GCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTG < SRR19973061.1159375/150‑1 (MQ=60)
CTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCAT > SRR19973061.312032/1‑150 (MQ=60)
TGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGAGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATC < SRR19973061.1201241/150‑1 (MQ=60)
ATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCC > SRR19973061.1279547/1‑150 (MQ=60)
GCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGCCCATTTTGCATCGCCAGA < SRR19973061.3455056/150‑1 (MQ=60)
CATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATA < SRR19973061.3391650/150‑1 (MQ=60)
ACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTC < SRR19973061.2557995/150‑1 (MQ=60)
CAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCC < SRR19973061.270217/150‑1 (MQ=60)
AACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTG > SRR19973061.1244041/1‑150 (MQ=60)
GTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACC > SRR19973061.216340/1‑150 (MQ=60)
GCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATC < SRR19973061.740807/150‑1 (MQ=60)
GCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATA < SRR19973061.3324127/150‑1 (MQ=60)
GCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATA < SRR19973061.1420862/150‑1 (MQ=60)
GCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAA > SRR19973061.3386959/1‑150 (MQ=60)
GCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAA > SRR19973061.3387137/1‑150 (MQ=60)
CGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAA > SRR19973061.2608185/1‑150 (MQ=60)
CAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAAT > SRR19973061.78067/1‑150 (MQ=60)
CAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAAT > SRR19973061.77531/1‑150 (MQ=60)
CAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAAT < SRR19973061.82801/150‑1 (MQ=60)
CAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAAT < SRR19973061.1847173/150‑1 (MQ=60)
CAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAAT < SRR19973061.1847115/150‑1 (MQ=60)
AAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATC < SRR19973061.1098312/150‑1 (MQ=60)
AAGAATTTGAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATC < SRR19973061.1986456/150‑1 (MQ=60)
AGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCC > SRR19973061.1954817/1‑150 (MQ=60)
GACTTTTAGCGGTCAGAAGATCTACAATATCGTAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCT < SRR19973061.1182150/150‑1 (MQ=60)
ACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTT > SRR19973061.2318915/1‑150 (MQ=60)
CTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTT > SRR19973061.2884740/1‑150 (MQ=60)
CTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTT > SRR19973061.579017/1‑150 (MQ=60)
TTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTG < SRR19973061.40150/150‑1 (MQ=60)
TTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCC > SRR19973061.2191387/1‑150 (MQ=60)
TAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCT > SRR19973061.938325/1‑150 (MQ=60)
AGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTT > SRR19973061.466367/1‑150 (MQ=60)
GGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAG < SRR19973061.1333973/150‑1 (MQ=60)
GGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTACATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAG < SRR19973061.3239272/150‑1 (MQ=60)
CAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAG < SRR19973061.282701/150‑1 (MQ=60)
AGAAGATCTACAAGATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGA < SRR19973061.2277300/150‑1 (MQ=60)
AAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATC > SRR19973061.1721047/1‑150 (MQ=60)
AAGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATC < SRR19973061.2846919/150‑1 (MQ=60)
AGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCG < SRR19973061.1695302/150‑1 (MQ=60)
AGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCG > SRR19973061.2070706/1‑150 (MQ=60)
AGATCTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCG > SRR19973061.156333/1‑150 (MQ=60)
CTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTA < SRR19973061.3132519/150‑1 (MQ=60)
CTACAATATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTA < SRR19973061.1229940/150‑1 (MQ=60)
ATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTC > SRR19973061.3338680/1‑150 (MQ=60)
ATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTC > SRR19973061.1802282/1‑150 (MQ=60)
ATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTC > SRR19973061.2161171/1‑150 (MQ=60)
ATCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTC > SRR19973061.1802146/1‑150 (MQ=60)
TCGGAAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACATTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCT > SRR19973061.130641/1‑150 (MQ=60)
AAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAG > SRR19973061.1870384/1‑150 (MQ=60)
AAGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAG < SRR19973061.430153/150‑1 (MQ=60)
AGCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGT < SRR19973061.381873/150‑1 (MQ=60)
GCTGAAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTC < SRR19973061.2748462/150‑1 (MQ=60)
AAATGTTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAAT < SRR19973061.1727256/150‑1 (MQ=60)
TTAATTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACAT < SRR19973061.2518350/150‑1 (MQ=60)
TTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGC < SRR19973061.2400331/150‑1 (MQ=60)
TTTACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGCACCTGTTCTTTAGTCAAATGACATGTGC < SRR19973061.488916/150‑1 (MQ=60)
ACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAA > SRR19973061.3481307/1‑150 (MQ=60)
ACTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAA > SRR19973061.3481313/1‑150 (MQ=60)
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AAACGTATTAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCTGCATGGCCATAAACAAACCCGTGTCGCGCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAA > CP009273/4210604‑4210902
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
