Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F247 I0 R1
|
1496 |
299.8 |
9582018 |
97.8% |
9371213 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,011,929 |
T→A |
36.4% |
intergenic (‑3/+66) |
fabA ← / ← ycbZ |
beta‑hydroxydecanoyl thioester dehydrase/putative peptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,011,929 | 0 | T | A | 36.4%
| 265.7
/ 271.1
| 236 | intergenic (‑3/+66) | fabA/ycbZ | beta‑hydroxydecanoyl thioester dehydrase/putative peptidase |
| Reads supporting (aligned to +/- strand): ref base T (81/69); new base A (43/43); total (124/112) |
| Fisher's exact test for biased strand distribution p-value = 5.89e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 248 total aligned reads displayed.
TACCACCCGTTTCGGTCATTTTGACCACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGTTGCGATGCTTGCGCGATA > CP009273/1011782‑1012076
|
tACCACCCGTTTCGGTCATTTTGACCACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTtc > 1:1220849/1‑149 (MQ=255)
accaccCGTTTCGGTCATTTTGACCACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTtct < 1:2779744/149‑1 (MQ=255)
cccGTTTCGGTCATTTTGACCACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGt < 1:3959807/149‑1 (MQ=255)
cGTTTCGGTCATTTTGACCACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTaa < 2:1710495/149‑1 (MQ=255)
tttCGGTCATTTTGACCACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGc < 2:4731547/149‑1 (MQ=255)
ggTCATTTTGACCACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCtta > 2:499233/1‑149 (MQ=255)
tCATTTTGACCACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCttatt < 1:2386276/149‑1 (MQ=255)
tCATTTTGACCACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCttatt < 1:4398600/149‑1 (MQ=255)
cATTTTGACCACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCttattt < 2:1030182/149‑1 (MQ=255)
aTTTTGACCACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCttatttt < 1:1170205/149‑1 (MQ=255)
ttttGACCACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCttatttta > 2:4437449/1‑149 (MQ=255)
aCCACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGaa < 1:579862/149‑1 (MQ=255)
ccACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAg > 1:840001/1‑149 (MQ=255)
cacGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCAc > 2:2595515/1‑149 (MQ=255)
gTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAg < 2:523605/149‑1 (MQ=255)
gTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAg < 2:2915698/149‑1 (MQ=255)
gTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAg < 1:1687298/149‑1 (MQ=255)
catcatCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGAt < 2:1627159/149‑1 (MQ=255)
catcatCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGAt < 1:1111361/149‑1 (MQ=255)
tcatcaGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTCTTGAAGCACGCAGGATAg > 2:1663004/1‑149 (MQ=255)
atcaGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCt > 1:17802/1‑149 (MQ=255)
caGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTaa < 2:469388/149‑1 (MQ=255)
tGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACgt < 1:3429646/149‑1 (MQ=255)
cGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTAc < 1:197200/149‑1 (MQ=255)
gTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGc < 1:2617141/149‑1 (MQ=255)
tGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGaa > 1:1978687/1‑149 (MQ=255)
tGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGaa < 2:62799/149‑1 (MQ=255)
aaTTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAg > 2:3841975/1‑149 (MQ=255)
aTTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGt > 1:1067805/1‑149 (MQ=255)
ttGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAATGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGACTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTc < 1:3894326/149‑1 (MQ=255)
ttGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTc < 1:1504362/149‑1 (MQ=255)
tGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTcc < 2:2201944/149‑1 (MQ=255)
cGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGa < 2:1788615/149‑1 (MQ=255)
ggCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATc < 1:329991/149‑1 (MQ=255)
ggCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATc < 2:2976038/149‑1 (MQ=255)
gCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCa < 1:2215465/149‑1 (MQ=255)
cTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGt < 1:140334/149‑1 (MQ=255)
cTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTACGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGt > 2:3337216/1‑149 (MQ=255)
cTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGt > 1:3863644/1‑149 (MQ=255)
tttAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGtt < 2:2147497/149‑1 (MQ=255)
gcgcCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGa < 2:2665163/149‑1 (MQ=255)
cgcCAAACAGTTCACCGAGACCAGAGGCAAGAAGGTCTTATTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGaa < 1:651574/149‑1 (MQ=255)
gcCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAAt > 1:2969290/1‑149 (MQ=255)
cAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATaa > 2:1528116/1‑149 (MQ=255)
cAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATaa > 2:1849414/1‑149 (MQ=255)
cAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTGTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATaa > 2:2539755/1‑149 (MQ=255)
aaaCAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATaaa < 2:3607177/149‑1 (MQ=255)
cAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCa > 1:3555542/1‑149 (MQ=255)
ttCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGtt > 1:153292/1‑149 (MQ=255)
tCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTc < 1:4565503/149‑1 (MQ=255)
ccGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGc > 1:2499793/1‑149 (MQ=255)
aCCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACg > 1:2072037/1‑149 (MQ=255)
ccAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGt < 1:4515037/149‑1 (MQ=255)
gagGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAAt > 2:2814797/1‑149 (MQ=255)
gagGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAAt > 2:1933881/1‑149 (MQ=255)
gagGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAAt < 1:4515631/149‑1 (MQ=255)
agGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATg < 2:1235687/149‑1 (MQ=255)
agGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATg < 1:1968226/149‑1 (MQ=255)
ggCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATgg > 1:4189476/1‑149 (MQ=255)
gCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGc > 2:99698/1‑149 (MQ=255)
agaagGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCAt > 2:3047655/1‑149 (MQ=255)
gaagGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATg > 1:2878510/1‑149 (MQ=255)
aagGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATgg < 2:1431910/149‑1 (MQ=255)
aagGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATgg < 2:1431664/149‑1 (MQ=255)
agGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGa > 1:2440735/1‑149 (MQ=255)
agGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGa < 2:3247645/149‑1 (MQ=255)
ggTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGaa > 2:2073330/1‑149 (MQ=255)
ggTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGaa > 1:2610337/1‑149 (MQ=255)
ggTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGaa > 2:2710807/1‑149 (MQ=255)
gTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGaca > 1:2862281/1‑147 (MQ=255)
gTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGaaa > 1:2840545/1‑149 (MQ=255)
ttcttTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACg > 2:3547198/1‑149 (MQ=255)
tcttTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACgg < 1:3502956/149‑1 (MQ=255)
tcttGTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACgg < 1:3382568/149‑1 (MQ=255)
cttTTGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGt < 1:760722/149‑1 (MQ=255)
ttttGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTg > 2:3298791/1‑149 (MQ=255)
ttttGTATAGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTg > 2:2436589/1‑149 (MQ=255)
tttGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGa < 1:46299/149‑1 (MQ=255)
ataGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGtcc < 1:1733854/149‑1 (MQ=255)
ataGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGtcc < 1:3841975/149‑1 (MQ=255)
ataGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGtcc > 2:3533833/1‑149 (MQ=255)
taGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGtcct < 2:4379042/149‑1 (MQ=255)
aGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGtcctt > 2:2272408/1‑149 (MQ=255)
aGGATTCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGtcctt < 1:1255749/149‑1 (MQ=255)
ggATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTACTGGCCATGGAAAACGGTGACGtccttc > 2:3738442/1‑149 (MQ=255)
aTTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGtccttcct < 2:4095174/149‑1 (MQ=255)
tCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGt < 2:1598031/149‑1 (MQ=255)
tCGCGTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGt < 1:1383282/149‑1 (MQ=255)
cgcgTTTATCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGtt > 1:3737709/1‑149 (MQ=255)
gcgTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGTTg > 2:3858509/1‑149 (MQ=255)
gcgTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGTTg > 1:2794336/1‑149 (MQ=255)
aTCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGTTGCGATGc < 1:2539755/149‑1 (MQ=255)
aTCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGTTGCGATGc < 2:958554/149‑1 (MQ=255)
aTCTACCATGTACTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGTTGCGATGc > 1:719570/1‑149 (MQ=255)
tCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGTTGCGATGCt > 1:3626891/1‑149 (MQ=255)
aCCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGTTGCGATGCTTgc > 2:210194/1‑149 (MQ=255)
tGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGTTGCGATGCTTGCGCGa > 2:3981406/1‑149 (MQ=255)
tGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGTTGCGATGCTTGCGCGa > 2:837169/1‑149 (MQ=255)
gTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTACCTGTTGCGATGCTTGCGCGAt > 2:4011460/1‑149 (MQ=255)
ttCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGTTGCGATGCTTGCGCGATa > 2:4125701/1‑149 (MQ=255)
|
TACCACCCGTTTCGGTCATTTTGACCACACGGTCCATCATCAGCATGTTCGGTGCTGGCAATTGCGGGCCTTTAGCGCCAAACAGTTCACCGCGACCAGAGGCAAGAAGGTCTTCTTTTGTATAGGATTCGCGTTTATCTACCATGTTCTCTGTAAGCCTTATTTTATTGAAGCACGCAGGATAGCTAACACGTGTACGCTGAACAAGTCCGATCAGTTCGGAATAAACCAGTTCAGCCAACGTAATGGCCATGGAAAACGGTGACGTCCTTCCTGTTGCGATGCTTGCGCGATA > CP009273/1011782‑1012076
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
