Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F159 I0 R1 879 305.9 9588012 96.6% 9262019 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 816,152 C→A 30.2% intergenic (+108/‑97) ybhL → / → ybhM UPF0005 family inner membrane protein/UPF0005 family inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273816,1520CA30.2% 340.8 / 147.2 181intergenic (+108/‑97)ybhL/ybhMUPF0005 family inner membrane protein/UPF0005 family inner membrane protein
Reads supporting (aligned to +/- strand):  ref base C (55/71);  new base A (25/30);  total (80/101)
Fisher's exact test for biased strand distribution p-value = 8.71e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 181 total aligned reads displayed.

TGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCA  >  CP009273/816004‑816300
                                                                                                                                                    |                                                                                                                                                    
 gTTCCTGATTTTGTTGCGTATCTTCGGCAACCGCCGTTAATTATTTTTCACCATCACTATCCCGGCCATGTGTCGGTATTTTTTTATTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGt                                                                                                                                                    <  1:306144/150‑1 (MQ=255)
    ccTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGtttt                                                                                                                                                 <  2:1445448/150‑1 (MQ=255)
    ccTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTACACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGtttt                                                                                                                                                 <  1:332928/150‑1 (MQ=255)
     cTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTc                                                                                                                                                <  2:4224956/150‑1 (MQ=255)
         tgttgtGGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCAGGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTa                                                                                                                                            <  2:3363923/150‑1 (MQ=255)
           ttgttgCGGATCTTCGGCAACCGCGGTTAATTCTTTTTCACCATCACTACCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATc                                                                                                                                          <  2:3285646/150‑1 (MQ=255)
             gttgCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCa                                                                                                                                        <  2:669181/150‑1 (MQ=255)
               tgCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCGGGCCTGGTGTCGGTTTTTTTTTCTTACTAAACACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATa                                                                                                                                      <  1:3636909/150‑1 (MQ=255)
               tgCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATa                                                                                                                                      <  2:1535233/150‑1 (MQ=255)
                 cGGATCTTCGGAAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGTATTTTTTTCTTACTAAACACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATaaa                                                                                                                                    <  2:1318260/150‑1 (MQ=255)
                  gtaTCTTCGGAAACCCCGTTTAATTTTTTTTCACCATATCTATCCCGGCCATTTTGTGGGATTTTTTTTTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATTGACGAGCGGAAGCGTTTTCTGTATCCATAAAt                                                                                                                                   <  1:2093298/148‑1 (MQ=255)
                  ggATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAAt                                                                                                                                   >  2:2346939/1‑150 (MQ=255)
                  ggATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTATGTATCCATaaaa                                                                                                                                   >  1:380195/1‑149 (MQ=255)
                      cTTCGGCAACCGCGGTTAATTATTTTTCACCATCACTATCCCGGCCAGGTGTCGGTATTTTTTTCTTACTAAACACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCaa                                                                                                                               <  2:1348825/150‑1 (MQ=255)
                       ttCGGCAACCGCCGTTAATTGTTTTTCACCATCACTATCCCGGCCATGTGTGGGTTTTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCaaa                                                                                                                              <  1:2587720/150‑1 (MQ=255)
                          ggaaaCCGCCTTTATTTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGTATTTTTTTCTAACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGt                                                                                                                           <  1:1021833/147‑1 (MQ=255)
                          ggCAACCGCCGTTAATTCTTTTTCACCAACACTAACCCGGCCAAGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGt                                                                                                                           >  1:2303455/1‑150 (MQ=255)
                          ggCAACCGCCGTTAATTCTTTTTAACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAAAGACACTTAACAAGTACCACGTATAAAATATTCCATATTGACGAGCGGAAGCGTTTTCTGTATCCATAAAAGAaaaatt                                                                                                                           >  1:2698715/1‑148 (MQ=255)
                            cAACCGCCGTTAATTCTTTTTCACCATCACAATCCCGGCCAATTGTCGGGATTTTTTTCTTACTAAAAACGACACATAACAAGTACCAGGTATAAAAAATTCCATATGGACGAGCGGAAGCGTTTTATGTATCCATAAAAGCAAAAGGAt                                                                                                                         >  1:634399/1‑150 (MQ=255)
                              cccgcctTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTAttt                                                                                                                       <  2:2820907/149‑1 (MQ=255)
                               ccgcatttatttatTTTTCACCATCACTAGCCCGGCCATGTTTCGTTTTTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTAtttt                                                                                                                      <  2:2049168/144‑1 (MQ=255)
                                 gccgTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGt                                                                                                                    >  1:276707/1‑150 (MQ=255)
                                   cgTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTAt                                                                                                                  >  1:3449076/1‑150 (MQ=255)
                                    gTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATg                                                                                                                 <  2:284587/150‑1 (MQ=255)
                                    gTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATg                                                                                                                 >  1:1982110/1‑150 (MQ=255)
                                      tAATTCTTTTACACCAACACTACCCCGGCCTTGTTTCGGTATTTTTTTATAAATAAACACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCg                                                                                                               <  1:905662/150‑1 (MQ=255)
                                       aaTTCTTTTTCACCACCACTACCCCGGCCATGTGTGGGTTTTTTTTACTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGt                                                                                                              <  1:2985568/150‑1 (MQ=255)
                                       aaTTCTTTTACACCATCACTCTCCCGGCCATGTGTGGGGATTTTTTTATTACAAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGt                                                                                                              <  1:2984062/150‑1 (MQ=255)
                                        cttCTTATCCACCAGCACTACCCCGCCCCGGTGGCGGTATTTTTCTCTTACCAACCACGACACTTAACAAGTACAAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTg                                                                                                             <  1:1622041/149‑1 (MQ=255)
                                          tCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGt                                                                                                           >  1:3456926/1‑150 (MQ=255)
                                           cTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGtt                                                                                                          >  2:2218161/1‑150 (MQ=255)
                                              tttCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAATCGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTa                                                                                                       >  2:4599329/1‑150 (MQ=255)
                                              tttCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTa                                                                                                       >  1:2095322/1‑150 (MQ=255)
                                               ttCACCAACCCTCGCCCGGCCATGTGGCGGTTTTTTTTTCTTACAAAACACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTaa                                                                                                      <  1:2425572/150‑1 (MQ=255)
                                                tCACCATCACTATCCCGGCCATGTGTCGGTATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTaaa                                                                                                     <  2:3017890/150‑1 (MQ=255)
                                                 cACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAAt                                                                                                    <  1:3949364/150‑1 (MQ=255)
                                                 cACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAAt                                                                                                    >  2:859019/1‑150 (MQ=255)
                                                  aCCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGGGGTTTTAAAtt                                                                                                   >  1:3422386/1‑150 (MQ=255)
                                                  aCCAACACTAGCCCGGCCAGGTGTCGGTATTTTTTTCTTACAAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAAtt                                                                                                   <  2:59908/150‑1 (MQ=255)
                                                      tCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTAtt                                                                                               >  2:3284344/1‑150 (MQ=255)
                                                             cccGGCCCTGGGTGGGTTTTTTTTTCTTACAAAACACGACCCTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTg                                                                                        <  1:105265/150‑1 (MQ=255)
                                                             cccGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTg                                                                                        >  2:1243025/1‑150 (MQ=255)
                                                                    aggtgtCGTTATTTTTTTATTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGaatatta                                                                                 <  2:24411/148‑1 (MQ=255)
                                                                    aTGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGaatatta                                                                                 >  1:3371762/1‑150 (MQ=255)
                                                                     tgtgtgGGTATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGaatattaa                                                                                <  1:1548847/150‑1 (MQ=255)
                                                                     tgtgTCGGTATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGaatattaa                                                                                <  1:1548806/150‑1 (MQ=255)
                                                                     tgtgTCGGTATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGaatattaa                                                                                <  1:4529602/150‑1 (MQ=255)
                                                                       tgtCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGaatattaata                                                                              <  2:4745668/150‑1 (MQ=255)
                                                                       tgtCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGaatattaata                                                                              <  2:1889436/150‑1 (MQ=255)
                                                                          cGGTATTTTTTACTTAATAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATAttt                                                                           <  1:3902582/150‑1 (MQ=255)
                                                                          cGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATAttt                                                                           >  2:731363/1‑150 (MQ=255)
                                                                           ggtttttttttCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATAtttt                                                                          <  1:4569431/146‑1 (MQ=255)
                                                                           gggATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATAtttt                                                                          >  1:1194229/1‑150 (MQ=255)
                                                                            ggATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCCAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATAttttt                                                                         >  2:3117862/1‑150 (MQ=255)
                                                                            ggATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATAttttt                                                                         >  2:726732/1‑150 (MQ=255)
                                                                             taTTTTTTACTTACAAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATAtttttt                                                                        <  2:836567/149‑1 (MQ=255)
                                                                             gATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATAtttttt                                                                        >  2:3293999/1‑150 (MQ=255)
                                                                             gATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATAtttttt                                                                        <  2:2329194/150‑1 (MQ=255)
                                                                             gATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATAtttttt                                                                        >  1:1406007/1‑150 (MQ=255)
                                                                              aTTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTc                                                                       >  1:4615502/1‑150 (MQ=255)
                                                                              aTTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTATTTATACCTAAATGCCAAAGTATTTTTGATGGGTGGTTTTAAATTTATTTATGTGTAATATTAATAtttttta                                                                       >  1:407763/1‑149 (MQ=255)
                                                                                 tttttCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTaa                                                                    <  2:2793453/150‑1 (MQ=255)
                                                                                    ttCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGa                                                                 <  2:4141360/150‑1 (MQ=255)
                                                                                        tACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAAc                                                             >  2:4633957/1‑150 (MQ=255)
                                                                                         aCTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACt                                                            <  2:1982110/150‑1 (MQ=255)
                                                                                           tAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTaa                                                          >  2:2178780/1‑150 (MQ=255)
                                                                                            aaaaaCGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTaaa                                                         >  2:3690603/1‑150 (MQ=255)
                                                                                            aaaaaCGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTaaa                                                         >  2:1274638/1‑150 (MQ=255)
                                                                                                 cGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAAt                                                    >  1:2405704/1‑150 (MQ=255)
                                                                                                    cacTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGa                                                 <  1:4257578/150‑1 (MQ=255)
                                                                                                    cacTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGa                                                 <  1:1853026/150‑1 (MQ=255)
                                                                                                    cacTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGa                                                 >  2:3866218/1‑150 (MQ=255)
                                                                                                    cacTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGa                                                 <  1:876380/150‑1 (MQ=255)
                                                                                                    cacTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGa                                                 <  1:876776/150‑1 (MQ=255)
                                                                                                    cacTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGa                                                 <  1:366819/150‑1 (MQ=255)
                                                                                                      cTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAAt                                               <  1:2090722/150‑1 (MQ=255)
                                                                                                      cTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAAt                                               >  1:2052738/1‑150 (MQ=255)
                                                                                                         aaCAAGTACCAGTTATAAAATATGCCTTATGTAATAGAGGAAGCTTTTTCTGTAACAATAAATGCAAAAGTATTTTGTATGAGTTGTTTTAAATATATTTATTGTGAATATTAATATTTTTTATAATTATAAATAAAAGAATGTAAtaaa                                            >  1:994732/1‑147 (MQ=255)
                                                                                                         aaCAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCAt                                            >  2:253949/1‑150 (MQ=255)
                                                                                                         aaCAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCAt                                            >  1:3748591/1‑150 (MQ=255)
                                                                                                          aCAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATa                                           >  2:2769886/1‑150 (MQ=255)
                                                                                                          aCAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATa                                           <  2:4479668/150‑1 (MQ=255)
                                                                                                              gTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCg                                       <  1:3075401/150‑1 (MQ=255)
                                                                                                                aCCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCa                                     >  2:2107402/1‑150 (MQ=255)
                                                                                                                     gTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACa                                >  2:1362500/1‑150 (MQ=255)
                                                                                                                       ataAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGc                              >  1:4790194/1‑150 (MQ=255)
                                                                                                                       ataAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGc                              >  1:3900543/1‑150 (MQ=255)
                                                                                                                       ataAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGc                              >  2:3476432/1‑150 (MQ=255)
                                                                                                                           aaTATGCCTTATGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATa                          >  2:4610117/1‑150 (MQ=255)
                                                                                                                             tatGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATaaa                        <  1:1274638/150‑1 (MQ=255)
                                                                                                                              atGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAAt                       <  1:4340815/150‑1 (MQ=255)
                                                                                                                                 ccTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAg                    >  2:4526409/1‑150 (MQ=255)
                                                                                                                                   ttATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGAt                  <  1:3144066/150‑1 (MQ=255)
                                                                                                                                      tGGACGAGCGGAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGAtttt               <  1:3017026/150‑1 (MQ=255)
                                                                                                                                            aGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCAc         <  1:3881267/150‑1 (MQ=255)
                                                                                                                                               ggAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCTCGAg      >  2:154970/1‑150 (MQ=255)
                                                                                                                                                gAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTTAATATTAATTTTTTTTCTTAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCTCGAgg     <  2:4350379/150‑1 (MQ=255)
                                                                                                                                                gAAGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCTCGAgg     <  2:1946492/150‑1 (MQ=255)
                                                                                                                                                 aaGAGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCTCGAGGc    >  2:2060683/1‑150 (MQ=255)
                                                                                                                                                   gCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCa  <  2:3371762/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAAATTTATTGATGGTGAATATTAATATTTTTTCTAAGGATAACTAAAAGAATGGAATCATACTCGCAAAACAGCAATAAATTAGATTTTCAGCACGAGGCCA  >  CP009273/816004‑816300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A