Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F342 I0 R1 1331 225.9 7641038 95.8% 7320114 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,772,732 G→T 24.4% A107S (GCC→TCC)  lldR → dual role activator/repressor for lldPRD operon

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,772,7320GT24.4% 542.9 / 124.5 229A107S (GCC→TCC) lldRdual role activator/repressor for lldPRD operon
Reads supporting (aligned to +/- strand):  ref base G (77/96);  new base T (26/30);  total (103/126)
Fisher's exact test for biased strand distribution p-value = 8.77e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 229 total aligned reads displayed.

AGGCGTGCTGCTCAGTCGACGCGGCGGCGGGACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGACGTTCGTTTTCATCTGGCGATTGC  >  CP009273/3772587‑3772877
                                                                                                                                                 |                                                                                                                                                 
aGGCGTGCTGCTCAGTCGACGCGGCGGCGGGACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGcc                                                                                                                                                 <  1:1862295/148‑1 (MQ=255)
 ggCGTGCTGCTCAGTCGACGCGGCGGCGGGACGTTTATTCGCTGGAGTCTTGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCa                                                                                                                                                <  1:2457287/148‑1 (MQ=255)
     tgctgcTCAGTCGACGCGGCGGCGGGACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGa                                                                                                                                            >  1:1182888/1‑148 (MQ=255)
     tgctgcTCAGTCGACGCGGCGGCGGGACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGa                                                                                                                                            >  1:1182980/1‑148 (MQ=255)
      gctgctCAGTCGACGCGGCGGCGGGACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGaa                                                                                                                                           <  2:277432/148‑1 (MQ=255)
        tgctCAGTCGACGCGGCGGCGGGACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGc                                                                                                                                         <  2:1893226/148‑1 (MQ=255)
        tgctCAGTCGACGCGGCGGCGGGACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGc                                                                                                                                         <  1:3710035/148‑1 (MQ=255)
            cAGTCGACGCGGCGGCGGGACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGc                                                                                                                                     >  1:3044725/1‑148 (MQ=255)
               tCGACGCGGCGGCGGGACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCAcc                                                                                                                                  >  2:1197193/1‑148 (MQ=255)
                  aCGCGGCGGCGGGACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCgca                                                                                                                               >  2:1176055/1‑148 (MQ=255)
                    gcggcggcgGGACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCgcatg                                                                                                                             <  2:3680336/148‑1 (MQ=255)
                             ggACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGc                                                                                                                    >  1:2743990/1‑148 (MQ=255)
                              gACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCa                                                                                                                   >  1:3263491/1‑148 (MQ=255)
                              gACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCa                                                                                                                   <  1:158897/148‑1 (MQ=255)
                              gACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCa                                                                                                                   >  2:767821/1‑148 (MQ=255)
                              gACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCa                                                                                                                   <  2:3214945/148‑1 (MQ=255)
                               aCGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCaa                                                                                                                  <  1:6706/148‑1 (MQ=255)
                               aCGTTTATTCGCTGGAGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCaa                                                                                                                  <  2:3380728/148‑1 (MQ=255)
                                     aTTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATgcgcg                                                                                                            <  2:1446907/148‑1 (MQ=255)
                                      gtCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATgcgcgc                                                                                                           <  2:839254/147‑1 (MQ=255)
                                       tCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGcc                                                                                                          >  2:2066036/1‑148 (MQ=255)
                                            ggCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACAcc                                                                                                     <  1:2473306/148‑1 (MQ=255)
                                            ggCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACAcc                                                                                                     <  1:3610801/148‑1 (MQ=255)
                                             gCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCt                                                                                                    <  1:820586/148‑1 (MQ=255)
                                             gCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCt                                                                                                    <  1:1263835/148‑1 (MQ=255)
                                                tCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGc                                                                                                 >  1:1150007/1‑148 (MQ=255)
                                                 cATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATAGTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCg                                                                                                <  1:1323502/148‑1 (MQ=255)
                                                   tGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGAc                                                                                              >  2:3163348/1‑148 (MQ=255)
                                                   tGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGAc                                                                                              <  2:3131920/148‑1 (MQ=255)
                                                   tGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGAc                                                                                              >  1:1906612/1‑148 (MQ=255)
                                                    gACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACa                                                                                             >  1:826874/1‑148 (MQ=255)
                                                     acacATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACaa                                                                                            <  1:157079/148‑1 (MQ=255)
                                                          tGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACaaagaaa                                                                                       <  2:3347779/148‑1 (MQ=255)
                                                          tGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACaaagaaa                                                                                       <  1:1280538/148‑1 (MQ=255)
                                                          tGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACaaagaaa                                                                                       <  1:3265608/148‑1 (MQ=255)
                                                           ggTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACaaagaaaa                                                                                      <  2:3435756/148‑1 (MQ=255)
                                                            gTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACaaagaaaag                                                                                     <  2:2551680/148‑1 (MQ=255)
                                                             tCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACaaagaaaaga                                                                                    <  2:2599735/148‑1 (MQ=255)
                                                              cGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGAt                                                                                   <  2:3593259/148‑1 (MQ=255)
                                                                gAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTc                                                                                 >  2:500847/1‑148 (MQ=255)
                                                                gAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTc                                                                                 <  1:1676786/148‑1 (MQ=255)
                                                                gAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTc                                                                                 >  1:2000599/1‑148 (MQ=255)
                                                                 aGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCa                                                                                <  2:3560101/148‑1 (MQ=255)
                                                                  gCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAg                                                                               <  1:729340/148‑1 (MQ=255)
                                                                  gCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAg                                                                               <  1:3035428/148‑1 (MQ=255)
                                                                   cAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAgc                                                                              <  2:1942795/148‑1 (MQ=255)
                                                                     aaaCATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAgctt                                                                            >  2:3053195/1‑148 (MQ=255)
                                                                     aaaCATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAgctt                                                                            <  1:3090231/148‑1 (MQ=255)
                                                                      aaCATCGTCCAGCCGCTAAAAACACTTATGGCCGATGATCCGCATAACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGAATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAgcttt                                                                           >  1:3433954/1‑148 (MQ=255)
                                                                      aaCATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAgcttt                                                                           >  2:1378787/1‑148 (MQ=255)
                                                                       aCATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAgctttg                                                                          >  1:514746/1‑148 (MQ=255)
                                                                       aCATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAgctttg                                                                          >  1:2287309/1‑148 (MQ=255)
                                                                        cATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAgctttgc                                                                         >  2:61181/1‑148 (MQ=255)
                                                                              ccAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGaa                                                                   >  1:1993165/1‑148 (MQ=255)
                                                                                    gCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACg                                                             <  1:870492/148‑1 (MQ=255)
                                                                                     cTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGc                                                            >  1:3509307/1‑148 (MQ=255)
                                                                                      tAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCt                                                           >  2:1611919/1‑148 (MQ=255)
                                                                                        aaaaCTCTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGAGTCAGCTTTGCTTTGAAGCAACGCTaa                                                         <  2:1327374/148‑1 (MQ=255)
                                                                                            cacTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGa                                                     <  2:2823784/148‑1 (MQ=255)
                                                                                            cacTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGa                                                     >  2:669837/1‑148 (MQ=255)
                                                                                             acTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGaa                                                    >  1:1202182/1‑148 (MQ=255)
                                                                                             acTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGaa                                                    >  2:2266713/1‑148 (MQ=255)
                                                                                              cTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAg                                                   <  1:2784080/148‑1 (MQ=255)
                                                                                               tGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGa                                                  >  1:3196280/1‑148 (MQ=255)
                                                                                                 aTGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGAcc                                                <  2:459879/148‑1 (MQ=255)
                                                                                                  tGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGTCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGAccc                                               >  2:2667/1‑148 (MQ=255)
                                                                                                  tGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGTCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGAccc                                               >  2:2733/1‑148 (MQ=255)
                                                                                                  tGGCCGATGATCCGGATGACAGTGTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGAccc                                               <  2:2176371/148‑1 (MQ=255)
                                                                                                   ggCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCg                                              >  1:295281/1‑148 (MQ=255)
                                                                                                    gCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCgg                                             >  2:713252/1‑148 (MQ=255)
                                                                                                    gCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCgg                                             <  2:3228583/148‑1 (MQ=255)
                                                                                                         tgatCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATc                                        >  2:2853780/1‑148 (MQ=255)
                                                                                                         tgatCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATc                                        >  1:334089/1‑148 (MQ=255)
                                                                                                          gatCCGGATTACAGTTTCGATAGTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCGGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCg                                       <  2:2084117/148‑1 (MQ=255)
                                                                                                                gATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTcac                                 >  1:2515187/1‑148 (MQ=255)
                                                                                                                 aTTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTcaca                                <  1:45486/148‑1 (MQ=255)
                                                                                                                 aTTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTcaca                                <  1:2635281/148‑1 (MQ=255)
                                                                                                                 aTTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTcaca                                >  1:3119094/1‑148 (MQ=255)
                                                                                                                   tACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAg                              >  1:1428348/1‑148 (MQ=255)
                                                                                                                    aCAGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGc                             <  2:1076365/148‑1 (MQ=255)
                                                                                                                      aGTTTCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCgg                           <  2:3636717/148‑1 (MQ=255)
                                                                                                                        tttCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGAc                         >  1:1548565/1‑148 (MQ=255)
                                                                                                                         ttCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGAcg                        <  2:398805/148‑1 (MQ=255)
                                                                                                                         ttCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGAcg                        >  1:626802/1‑148 (MQ=255)
                                                                                                                          tCGATATTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGAcgt                       <  2:963693/148‑1 (MQ=255)
                                                                                                                          tCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGAcgt                       <  2:2964177/148‑1 (MQ=255)
                                                                                                                             atatTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGAcgttcg                    >  2:1006696/1‑148 (MQ=255)
                                                                                                                               atTCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGAcgttcgtt                  <  2:740545/148‑1 (MQ=255)
                                                                                                                               atTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGAcgttcgtt                  <  1:1989852/148‑1 (MQ=255)
                                                                                                                                 tCTGGAAGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGACGTGCGtttt                >  2:967747/1‑148 (MQ=255)
                                                                                                                                 tCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGACGTTCGtttt                <  2:375412/148‑1 (MQ=255)
                                                                                                                                  cTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGACGTTCGTTTTc               <  1:3251366/148‑1 (MQ=255)
                                                                                                                                      aaGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGACGTTCGTTTTCATCt           >  1:586104/1‑148 (MQ=255)
                                                                                                                                      aaGCCCGCTACTCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGACGTTCGTTTTCATCt           >  1:585322/1‑148 (MQ=255)
                                                                                                                                        gCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGACGTTCGTTTTCATCTgg         <  2:565593/148‑1 (MQ=255)
                                                                                                                                        gCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGACGTTCGTTTTCATCTgg         >  1:3739169/1‑148 (MQ=255)
                                                                                                                                         cccGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGACGTTCGTTTTCATCTGGc        >  2:1762021/1‑148 (MQ=255)
                                                                                                                                          ccGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGACGTTCGTTTTCATCTGGCg       <  1:2647953/148‑1 (MQ=255)
                                                                                                                                             cTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGACGTTCGTTTTCATCTGGCGAtt    >  2:1159705/1‑148 (MQ=255)
                                                                                                                                               aCGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGACGTTCGTTTTCATCTGGCGATTGc  >  2:127904/1‑148 (MQ=255)
                                                                                                                                                 |                                                                                                                                                 
AGGCGTGCTGCTCAGTCGACGCGGCGGCGGGACGTTTATTCGCTGGCGTCATGACACATGGTCGGAGCAAAACATCGTCCAGCCGCTAAAAACACTGATGGCCGATGATCCGGATTACAGTTTCGATATTCTGGAAGCCCGCTACGCCATTGAAGCCAGCACCGCATGGCATGCGGCAATGCGCGCCACACCTGGCGACAAAGAAAAGATTCAGCTTTGCTTTGAAGCAACGCTAAGTGAAGACCCGGATATCGCCTCACAAGCGGACGTTCGTTTTCATCTGGCGATTGC  >  CP009273/3772587‑3772877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A