Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F361 I0 R1
|
1353 |
250.7 |
8230166 |
96.0% |
7900959 |
148.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
910,669 |
A→C |
20.6% |
intergenic (‑356/+139) |
ybjE ← / ← aqpZ |
putative transporter/aquaporin Z |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 910,669 | 0 | A | C | 20.6%
| 91.7
/ 2.8
| 75 | intergenic (‑356/+139) | ybjE/aqpZ | putative transporter/aquaporin Z |
| Reads supporting (aligned to +/- strand): ref base A (40/11); new base C (10/2); total (59/16) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAATTAATCACGC > CP009273/910521‑910817
|
cGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGa < 1:3288096/149‑1 (MQ=32)
ggggCAGCCCCCATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAt < 1:808300/149‑1 (MQ=17)
ggggCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAt < 2:740558/149‑1 (MQ=32)
gggCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAtt < 2:3436146/149‑1 (MQ=32)
ggCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTg > 2:1728201/1‑149 (MQ=32)
gCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTgg > 1:650104/1‑149 (MQ=32)
gCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTgg > 1:650120/1‑149 (MQ=32)
aGCCCACATGGATGTGGGCTGAGGGCGCGGGGCCCCCCCCCCCAACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGgcc < 2:3917540/149‑1 (MQ=11)
caTGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGccccc < 1:1232096/149‑1 (MQ=32)
caTGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGccccc < 1:770124/149‑1 (MQ=32)
caTGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGccccc < 2:2474748/149‑1 (MQ=32)
aTGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGCTTGGCCGccccca > 1:3091169/1‑148 (MQ=17)
tGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGGGGCGGCGCTTGGGCccccccag > 1:205602/1‑147 (MQ=255)
tGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGccccccg > 1:3314436/1‑147 (MQ=17)
aTGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTg‑‑cgc < 2:3855096/149‑1 (MQ=32)
aTGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTg‑‑cgc > 2:3202688/1‑149 (MQ=32)
tgtgGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTg‑‑cgcg > 2:1706588/1‑149 (MQ=32)
ggCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTTTTCGCCAGAGCCCGGGGGTGGCGGGGGGGGCGGCGGGTTGGCGCCCCCCg‑‑cccccccc > 1:1450843/1‑142 (MQ=11)
gAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGGCGGGGGGGGGGGCGGTTTGCCGCCCCCCG‑‑CCCGCTCCATgc > 1:1524690/1‑149 (MQ=11)
aGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAtt > 2:3617344/1‑124 (MQ=32)
aGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAtt < 1:3617344/124‑1 (MQ=32)
gggCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCCCCGCGCAGCGGCGATTTTGTTCGCCCGAGCCCGGGGGTGCAGGGGGGGGCGGCGGGTGGGCGCCCCCGG‑‑CGCGCGCCGTgcgc > 1:1825067/1‑149 (MQ=11)
gggCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGGCGGGGGGGGCGGGGGGTGGGCGCCCCCCG‑‑CGCGCGCCATgcgc > 1:1825101/1‑149 (MQ=11)
ggCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAGTTTGTTCGCCAGAGCCCGGGGGTGCCGGGGGGGGCGGCGCGTGGCCCCCCCCCG‑‑CGCGCGCCGTGCGcc > 1:1818733/1‑149 (MQ=11)
gcgTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGt > 2:334123/1‑149 (MQ=32)
gcgTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCAG‑‑CGCGCTCCTTGCGCCCGt > 2:453863/1‑149 (MQ=17)
aGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGGAGGGGGCGGCGGCGATTGGCCGCCCCCAG‑‑CGCGCTCCTTGCGCCAGTGGCAATATg > 2:2783809/1‑149 (MQ=255)
gggATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCCGGGGGCGGCGGCGGTTGGGCGCCCCCCG‑‑CGCGCGCCGTGCGCCCGGGGCCAAATGt > 1:465212/1‑149 (MQ=11)
gATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCCGGGGGGGGCGGCGCTTGGGCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCCATATTTTg > 1:1989186/1‑149 (MQ=11)
tGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGGCGGGGGCGGCGGCGCGTGGCCGCCCCCAG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCt > 2:3451667/1‑149 (MQ=14)
tACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAg > 2:2730466/1‑149 (MQ=255)
aCCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCACTGGCCATATGTTCCTTAGc > 2:2114091/1‑149 (MQ=255)
ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGGGGCAATATGTTGCTTAGCt > 2:3168877/1‑149 (MQ=255)
ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCACGGGGCGGCCGCGATTTGCCCCCCCCTG‑‑CGCGCTCCTTGCGCCAGGGGCAATATGTTGCTTATCt > 2:1109860/1‑149 (MQ=14)
cTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAGTTTGTTCGCCAGAGCCCGGGGGTGGCGGGGGGGGCGGGGGTTTGCCCCCCCCCG‑‑CGCGCGCCCTTCGCCACGTGCCATATGTTGGTTAtctc > 1:3870962/1‑149 (MQ=11)
tCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGGGGCGGCGATTTGCCGCCCCCAG‑‑CGCGCTCCGTGCGCCACTGGCCATATGTTGCTTATCTCa > 1:306278/1‑149 (MQ=14)
tCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCGTGCGCCAGTGGCACTATGTTGCGTAGCTCa > 2:3962610/1‑149 (MQ=255)
gcgcCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGGCGGGGGGGGGGGGGGTTTGGCGCCCCCAG‑‑CGCGCGCCGTGCGCCCGTGGCAAAATTTTTGTTTGCTCAtt > 1:1219881/1‑148 (MQ=11)
gcgcCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATg > 2:2526383/1‑149 (MQ=255)
cgcCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCGTGCGCCCGTGGCAAAATGTTGCGTAGCTCATGa > 2:856720/1‑149 (MQ=255)
cGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGGGTGGCCGCCCCCCG‑‑CGCCCGCCCTGCGCCCCGGGCAAAATGTTTCTTATGTCATGGAAgg > 1:1478560/1‑149 (MQ=11)
aCCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAGTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCCTGAAAGGAg > 2:3607358/1‑149 (MQ=255)
ggTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGCTTGGCCGCCCCCTG‑‑CGCGCTCCTTTCGCCAGTGGCAAAATTTTGCTTATCTAAAGAAAGGTGCGca > 1:2285484/1‑149 (MQ=14)
ggTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCACGGGGCGGCGGCGGATGGCCGCCCCCAG‑‑CGCCCACCATGCGCCCCTGGCAAAATTTTGCTTATCTCATGAAACGAGCGca > 1:3200464/1‑149 (MQ=14)
cGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCCCTTTGGCGCCCCCGG‑‑CGCGCGCCTTGCGCCACTGGCAAAATGTTTCTTAGCACAATAAAGGAGCGcaacaaaa > 2:1426214/1‑147 (MQ=17)
gggATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCAG‑‑CGCGCTCCTTGCGCCACTGGCAATATGTTTCTTAGCTCATGAAAGGAGCGCAACAAGaagatg > 2:3772695/1‑149 (MQ=255)
ggATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGCGTGGCCGCCCCCAG‑‑CGCGCTCCCTGCGCAAGTGGCAAAAATTTGCTTATCGCATGAAAGGAGCGCAACAACAagatga > 1:979097/1‑149 (MQ=17)
aGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCaa > 2:3437305/1‑149 (MQ=255)
gTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATaaaa > 2:3934954/1‑148 (MQ=255)
gggCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAGTGGCCGGCCCCTG‑‑CGCGCGCCGTGCGCCACTGGCAATATGTTGGTTAGCTAATGAAAGGAGCGCAACCAGATGATGAATCAACAtata > 2:223423/1‑149 (MQ=21)
ggCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAGTGGCCGCCCCCAG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCGTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACAAATaa > 2:941573/1‑149 (MQ=255)
gCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGCTTGGCCGCCCCCGG‑‑CGCGCTCCTTGCGCCCGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATAAACATATaac > 2:3519203/1‑149 (MQ=255)
cgcgCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGGAGGGGGCGGGGGCGAATTGCCGCCCCCAG‑‑CGCGCTCCATTCGCCCCTGGCCAAATTTTTCTTATCTCATGAAAGGTGCGCAACAAAATGATTAAAAAACAAATaaaaaaa > 1:2068988/1‑147 (MQ=9)
gcgcAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTTGCCGCCCCCTG‑‑CCCGCTCCTTGCGCCAGTGGCAATAAGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATTATTCATACACATATAACAAAAt > 2:2166145/1‑149 (MQ=18)
aTTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCATGCGCCAGGGGCAAAATGTTGCTTAGCTCATGTAAGGAGCGCAACAAGATGTTGTATCAACATATAAAAAACTCTTAAAAAAAg > 1:3711740/1‑149 (MQ=21)
ttttGTTCGCCAGAGCCCGGGGGTGCAGGGGGGGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCGCCGTGCGCCAGTGGCAATATTTTTCTTAGCTCATTAAAGGTGCGCAACAAGAATATGAATCAAAAAATAAAAACAACTTAAAAAAAgg > 1:616105/1‑149 (MQ=18)
ttttGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCCATTGGGCCCCCCCAG‑‑CGCGCTCCATGCGCCACTGGCAAAATTTTTCTTATCGCAATGAATGAGCGCAACAAGATGATGTATAAAAAAATAACAACAACTTaaaaaaaat > 1:3566635/1‑147 (MQ=12)
tttGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGCATGGCCGCCCCCAG‑‑CGCGCGCCTTGCGCCCGTGGCCATATTTTGCTTAGCTCATGTAAGGAGCGCAAAAACATGATGAATCAACATATAACAACAACTTAAAAAAAGGc > 2:1423392/1‑149 (MQ=25)
ttggccgcccgcgcccgGGGGGGCGGGGGGCGCGGGCGCGGGGCCCCCCCCCG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGcc < 2:2657110/144‑1 (MQ=255)
gCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTTCGCCAGGGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAAACAACATATAACAACATCATAAAAAAAGGCCTGACAt > 2:2847179/1‑149 (MQ=255)
gCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACAGATAACCACATCTTAAAAAAAGGCCAGACAt > 2:2847170/1‑149 (MQ=255)
cccgcgCCGGGGGGGGCGGGGGGCGGGGGCTAGGGCCCCCCCCCCC‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACAtt < 2:2068988/144‑1 (MQ=37)
gggggggggggGCGGGGGGGGGGGGC‑TTTGGCCCCCCCCCGC‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGc < 2:3314436/144‑1 (MQ=255)
gCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCACCGTTCGCCAGTGGCAAAATTTTTCTTATCTAAAGAAACGAGCGCAACAAAATTATGAAAAAACAAATAACAAAAAAATAAAAAAAAGCCAGACAATaaccc > 2:19927/1‑145 (MQ=12)
gcGGGGGGGGGGGGGGGGGGGGGGCTTGGGCCCCCCCCGCCCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGcc < 2:3977542/148‑1 (MQ=255)
ggggTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGcc > 2:2510622/1‑149 (MQ=255)
gggggggggggCGGCGGCGTGGCGCCCCCCCCGC‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCtt < 1:1733313/143‑1 (MQ=38)
gCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTg > 1:3560242/1‑149 (MQ=255)
gggggCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGt > 1:584283/1‑149 (MQ=255)
ggggggggggCGGTGGCCCCCCCCCGGC‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGt < 2:798193/149‑1 (MQ=255)
ggggCGGGCGCGAGGGGCCGCCCCCGC‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGtt < 2:3312138/149‑1 (MQ=255)
gcggcgATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGttaattaa > 2:3478553/1‑149 (MQ=255)
gcggcgATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGttaattaa > 2:3478547/1‑149 (MQ=255)
gcgATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCCGGCCTTCTGCGTTAATTAATCa > 2:3882852/1‑149 (MQ=255)
gcgATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAATTAATCa > 1:2694649/1‑149 (MQ=255)
gcgATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAATTAATCa > 2:3882253/1‑149 (MQ=255)
aTTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAATTAATCACGc > 1:2926979/1‑149 (MQ=255)
aTTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAATTAATCACGc > 2:727920/1‑149 (MQ=255)
aTTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAATTAATCACGc > 2:2789821/1‑149 (MQ=255)
|
CGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAATTAATCACGC > CP009273/910521‑910817
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
