Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F204 I0 R1	1155	255.8	8356456	95.7%	7997128	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	1,161,438	C→A	33.8%	intergenic (+297/‑103)	ycfP → / → ndh	putative UPF0227 family esterase/respiratory NADH dehydrogenase 2/cupric reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	1,161,438	0	C	A	33.8%	409.1 / 223.8	240	intergenic (+297/‑103)	ycfP/ndh	putative UPF0227 family esterase/respiratory NADH dehydrogenase 2/cupric reductase
Reads supporting (aligned to +/- strand): ref base C (81/78); new base A (38/43); total (119/121)
Fisher's exact test for biased strand distribution p-value = 5.87e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01

Only 100 of 246 total aligned reads displayed.

CTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTG  >  CP009273/1161290‑1161586

cTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATtct                                                                                                                                                     >  2:3744089/1‑150 (MQ=255)

 tCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATtctc                                                                                                                                                    >  1:2138139/1‑150 (MQ=255)

 tCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATtctc                                                                                                                                                    <  2:524708/150‑1 (MQ=255)

    ctctATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAAt                                                                                                                                                 <  2:3689687/150‑1 (MQ=255)

    ctctATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAAt                                                                                                                                                 >  2:3892374/1‑150 (MQ=255)

         tatCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCga                                                                                                                                            >  1:1668947/1‑150 (MQ=255)

              ctctCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAAc                                                                                                                                       >  2:1646092/1‑150 (MQ=255)

                 tcACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACAtt                                                                                                                                    <  1:2572487/150‑1 (MQ=255)

                  cacaAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACAttt                                                                                                                                   <  1:1559569/150‑1 (MQ=255)

                  cacaAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACAttt                                                                                                                                   >  1:2488937/1‑150 (MQ=255)

                    caAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTc                                                                                                                                 <  2:3503294/150‑1 (MQ=255)

                    caAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTc                                                                                                                                 >  2:3583083/1‑150 (MQ=255)

                    caAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTc                                                                                                                                 <  2:666675/150‑1 (MQ=255)

                     aaaTTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCa                                                                                                                                >  1:2136955/1‑150 (MQ=255)

                      aaTTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCATCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCAt                                                                                                                               <  1:2236759/150‑1 (MQ=255)

                      aaTTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCAt                                                                                                                               >  2:3997149/1‑150 (MQ=255)

                       aTTCGCTCAAATAATAAACACTAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCAtt                                                                                                                              <  1:1878196/150‑1 (MQ=255)

                        ttCGCTCAAATAATAAACAATAAACACTGTTTTTTTATCTCACACGGTAAAGTCGCCTATCATTTCAGCAACAAAACTTTATTAAAATCAATTTTGGTATGACCAATGCACCATTCATTTTATTCTCAAAAGCGAAAAAAATTTTCATTg                                                                                                                             >  2:1882413/1‑150 (MQ=255)

                          cGCTCAAATAATAACCAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCt                                                                                                                           <  2:889266/150‑1 (MQ=255)

                          cGCTCAAATAATAAACAATACACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCt                                                                                                                           <  2:1497735/150‑1 (MQ=255)

                           gCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTg                                                                                                                          >  1:2343561/1‑150 (MQ=255)

                            cTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGt                                                                                                                         <  1:1854233/150‑1 (MQ=255)

                            cTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGt                                                                                                                         >  1:147681/1‑150 (MQ=255)

                            cTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGt                                                                                                                         >  1:3417191/1‑150 (MQ=255)

                             tCAAATAATAACCAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTa                                                                                                                        <  1:2661077/150‑1 (MQ=255)

                             tCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTa                                                                                                                        <  1:1053270/150‑1 (MQ=255)

                               aaaTAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAAc                                                                                                                      >  2:4128859/1‑150 (MQ=255)

                                aataatAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAAcc                                                                                                                     <  1:3697650/150‑1 (MQ=255)

                                aataatAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAAcc                                                                                                                     >  1:3134043/1‑150 (MQ=255)

                                 ataataAACAATAAACTCTTTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCt                                                                                                                    <  2:600954/150‑1 (MQ=255)

                                    ataaacaataaacTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCtgtt                                                                                                                 >  2:1224204/1‑150 (MQ=255)

                                     taaacaataaacTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCtgttg                                                                                                                >  1:965528/1‑150 (MQ=255)

                                      aaacaataaacTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCtgttgt                                                                                                               >  2:3322449/1‑150 (MQ=255)

                                        acaataaacTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGtta                                                                                                             >  2:1758534/1‑150 (MQ=255)

                                         caataaacTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGttaa                                                                                                            >  2:1006425/1‑150 (MQ=255)

                                          aataaacTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGttaat                                                                                                           <  1:3972265/150‑1 (MQ=255)

                                            taaacTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGttaatta                                                                                                         <  2:1414431/150‑1 (MQ=255)

                                             aacctctGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGttaattaa                                                                                                        <  2:1675019/147‑1 (MQ=255)

                                               acTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAaga                                                                                                      >  2:2487418/1‑150 (MQ=255)

                                               acTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAaga                                                                                                      <  1:2791358/150‑1 (MQ=255)

                                                ctctGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAagag                                                                                                     >  1:2984341/1‑150 (MQ=255)

                                                 tctGATTTTTCATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAACCTTGATAAACATCAATTTTGGAATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGc                                                                                                    <  1:3922780/150‑1 (MQ=255)

                                                  ctGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCt                                                                                                   <  2:2226145/150‑1 (MQ=255)

                                                  ctGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGAGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCt                                                                                                   >  2:4070963/1‑150 (MQ=255)

                                                    gTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAACACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTAt                                                                                                 <  1:3346901/150‑1 (MQ=255)

                                                    gTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTAt                                                                                                 >  2:21535/1‑150 (MQ=255)

                                                    gTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTAt                                                                                                 >  1:1636223/1‑150 (MQ=255)

                                                      tttttGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGt                                                                                               >  1:1794241/1‑150 (MQ=255)

                                                       ttttGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGtt                                                                                              >  2:2077863/1‑150 (MQ=255)

                                                       ttttGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGtt                                                                                              <  2:3803567/150‑1 (MQ=255)

                                                         ttGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTtaa                                                                                            >  2:3163007/1‑150 (MQ=255)

                                                           gATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTtaata                                                                                          <  1:1826734/150‑1 (MQ=255)

                                                             tctcACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAAc                                                                                        >  2:516879/1‑150 (MQ=255)

                                                             tctcACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAAc                                                                                        >  2:2600309/1‑150 (MQ=255)

                                                              ctcACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAAcc                                                                                       >  1:1366796/1‑150 (MQ=255)

                                                                cACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCat                                                                                     >  1:3562316/1‑150 (MQ=255)

                                                                cACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCat                                                                                     >  2:1474242/1‑150 (MQ=255)

                                                                 aCCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCatt                                                                                    <  2:1054385/150‑1 (MQ=255)

                                                                  cccGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCatta                                                                                   <  1:3039228/150‑1 (MQ=255)

                                                                  cccGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCatta                                                                                   <  2:468852/150‑1 (MQ=255)

                                                                      gTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCattaatta                                                                               <  1:1897864/150‑1 (MQ=255)

                                                                       tAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCAttaattaa                                                                              <  2:1185368/150‑1 (MQ=255)

                                                                       tAAAGTCGCCTATCATTTCAGCAACAACACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCAttaattaa                                                                              <  2:1184616/150‑1 (MQ=255)

                                                                        aaaGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAAc                                                                             <  1:1152094/150‑1 (MQ=255)

                                                                          aGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACCTCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACaa                                                                           <  1:1086557/150‑1 (MQ=255)

                                                                          aGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACaa                                                                           <  1:3596842/150‑1 (MQ=255)

                                                                          aGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACaa                                                                           <  2:3805706/150‑1 (MQ=255)

                                                                                cTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGtt                                                                     <  1:3760950/150‑1 (MQ=255)

                                                                                   tCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTtaat                                                                  <  1:3014808/150‑1 (MQ=255)

                                                                                     ctctCAGCCACACAACTTGATTAACCACAATTTTGGTAGGACCAATGCACCAGTCCAGTTATTCTCAATAGCGAAGCACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTtaataa                                                                <  1:2473005/147‑1 (MQ=255)

                                                                                       ttCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCAGTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAAt                                                              >  1:2162790/1‑150 (MQ=255)

                                                                                          aGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTa                                                           <  2:79403/150‑1 (MQ=255)

                                                                                            caacaaAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAg                                                         <  1:594111/150‑1 (MQ=255)

                                                                                            caacaaAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAg                                                         >  2:2696719/1‑150 (MQ=255)

                                                                                            caacaaAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAg                                                         <  1:594136/150‑1 (MQ=255)

                                                                                             aacaaAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAgg                                                        <  2:2738502/150‑1 (MQ=255)

                                                                                              acaaAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAggg                                                       <  2:298461/150‑1 (MQ=255)

                                                                                              acaaAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAggg                                                       <  2:1401516/150‑1 (MQ=255)

                                                                                                 aaaCTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGt                                                    <  1:69782/150‑1 (MQ=255)

                                                                                                  aaCTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGta                                                   <  1:2606523/150‑2 (MQ=255)

                                                                                                        aTTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTg                                             <  2:3325830/150‑1 (MQ=255)

                                                                                                              aTCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACg                                       >  1:507719/1‑150 (MQ=255)

                                                                                                                cAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGcc                                     >  2:2117707/1‑150 (MQ=255)

                                                                                                                  aTTTTGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCAt                                   <  2:2894860/150‑1 (MQ=255)

                                                                                                                     ttGGTATGACCAATGCACCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGa                                >  2:4140142/1‑150 (MQ=255)

                                                                                                                             aCCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTGAAGACATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAgatt                        >  2:2383849/1‑150 (MQ=255)

                                                                                                                             aCCAATGCACCATTCATGTTATTCTCAAGAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAgatt                        <  2:1272782/150‑1 (MQ=255)

                                                                                                                                   gCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAgattgtgatt                  >  1:457664/1‑150 (MQ=255)

                                                                                                                                     aCCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAgattgtgattgt                <  2:1280472/150‑1 (MQ=255)

                                                                                                                                     aCCATTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAgattgtgattgt                >  1:3291371/1‑150 (MQ=255)

                                                                                                                                      ccATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTc               >  1:750726/1‑150 (MQ=255)

                                                                                                                                        aTTCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTcgg             >  1:623013/1‑150 (MQ=255)

                                                                                                                                         ttCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTcggc            >  1:2316244/1‑150 (MQ=255)

                                                                                                                                          tCATGTTATTATCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTcggcg           >  1:3245469/1‑150 (MQ=255)

                                                                                                                                           cATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGACAAAGATTGTGATTGTcggcgg          >  2:3882692/1‑150 (MQ=255)

                                                                                                                                           cATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTcggcgg          <  1:1743357/150‑1 (MQ=255)

                                                                                                                                               ttATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt      >  1:890458/1‑150 (MQ=255)

                                                                                                                                                tATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTg     >  1:1397024/1‑150 (MQ=255)

                                                                                                                                                  ttCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCt   >  1:1967766/1‑150 (MQ=255)

                                                                                                                                                   tctcAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtg  <  2:2532814/150‑1 (MQ=255)

CTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATCTTTTCAGCAACAAAACTTGATTAACATCAATTTTGGTATGACCAATGCACCATTCATGTTATTCTCAATAGCGAAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTG  >  CP009273/1161290‑1161586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A