Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F98 I0 R1 799 294.1 9752082 92.2% 8991419 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 149,044 A→T 23.3% C86S (TGC→AGC)  yadM ← putative fimbrial‑like adhesin protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273149,0440AT23.3% 506.6 / 166.6 223C86S (TGC→AGC) yadMputative fimbrial‑like adhesin protein
Reads supporting (aligned to +/- strand):  ref base A (94/77);  new base T (22/30);  total (116/107)
Fisher's exact test for biased strand distribution p-value = 1.16e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 227 total aligned reads displayed.

GGCATCATCAGTAGTCCGTTTTTTGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCCATCATTCGTGACGTTATTACCAGTAAGTGTGATGTTACAGGTTGTCG  >  CP009273/148895‑149193
                                                                                                                                                     |                                                                                                                                                     
ggCATCATCAGTAGTCCGTTTTTTGAAACCCATTCCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCa                                                                                                                                                       <  2:3475577/150‑1 (MQ=255)
  catcatCAGTAGTCCGTTTTTTGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTcc                                                                                                                                                     >  2:4235123/1‑150 (MQ=255)
   atcatcAGTAGTCCGTTTTTTGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCAccc                                                                                                                                                    >  2:2984680/1‑150 (MQ=255)
     catcaGTAGTCCGTTTTTTGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCAc                                                                                                                                                  >  1:3855193/1‑150 (MQ=255)
        caGTAGTCCGTTTTTTGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTgg                                                                                                                                               >  1:3869545/1‑150 (MQ=255)
         agtagtCCGTTTTTTGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGc                                                                                                                                              >  1:4408599/1‑150 (MQ=255)
         agtagtCCGTTTTTTGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGc                                                                                                                                              <  2:3031567/150‑1 (MQ=255)
          gtagtCCGTTTTTTGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCa                                                                                                                                             <  1:601323/150‑1 (MQ=255)
          gtagtCCGTTTTTTGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCa                                                                                                                                             <  1:3263564/150‑1 (MQ=255)
          gtagtCCGTTTTTTGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCa                                                                                                                                             <  1:803336/150‑1 (MQ=255)
           tagtCCGTTTTTTGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCaa                                                                                                                                            <  2:1946365/150‑1 (MQ=255)
              tCCGTTTTTTGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCa                                                                                                                                         <  1:1374761/150‑1 (MQ=255)
                 gTTTTTTGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGtt                                                                                                                                      >  1:739144/1‑150 (MQ=255)
                  ttttttGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGttt                                                                                                                                     <  1:4386274/150‑1 (MQ=255)
                         aaaCCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCa                                                                                                                              >  2:4474777/1‑150 (MQ=255)
                          aaCCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAg                                                                                                                             >  2:1057193/1‑150 (MQ=255)
                           aCCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGc                                                                                                                            >  2:1531427/1‑150 (MQ=255)
                            cccATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGcc                                                                                                                           <  1:2463641/150‑1 (MQ=255)
                               aTACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTga                                                                                                                        <  1:3170994/150‑1 (MQ=255)
                                tACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTgag                                                                                                                       <  2:1680933/150‑1 (MQ=255)
                                tACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTgag                                                                                                                       <  1:522217/150‑1 (MQ=255)
                                 aCCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTgaga                                                                                                                      >  1:1514471/1‑150 (MQ=255)
                                  ccGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGAt                                                                                                                     <  1:4107491/150‑1 (MQ=255)
                                     atatTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCt                                                                                                                  <  2:2015885/150‑1 (MQ=255)
                                       atTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGt                                                                                                                >  1:2941402/1‑150 (MQ=255)
                                        ttACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTc                                                                                                               <  2:3232019/150‑1 (MQ=255)
                                         tACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCg                                                                                                              >  2:3142855/1‑150 (MQ=255)
                                         tACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCg                                                                                                              >  2:712072/1‑150 (MQ=255)
                                          aCTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTctt                                                                                                             >  1:4713555/1‑148 (MQ=255)
                                          aCTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGt                                                                                                             >  2:3037602/1‑150 (MQ=255)
                                           cTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGtt                                                                                                            >  2:2661761/1‑150 (MQ=255)
                                           cTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGtt                                                                                                            <  1:3427389/150‑1 (MQ=255)
                                           cTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGtt                                                                                                            <  1:1438474/150‑1 (MQ=255)
                                            ttGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGttt                                                                                                           <  2:1528223/150‑1 (MQ=255)
                                             tGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGtttt                                                                                                          >  1:843501/1‑150 (MQ=255)
                                              gtcgtcGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTa                                                                                                         <  1:3792378/150‑1 (MQ=255)
                                                cgtcgAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTAtt                                                                                                       <  2:2396814/150‑1 (MQ=255)
                                                cgtcgAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTAtt                                                                                                       <  2:3711083/150‑1 (MQ=255)
                                                 gtcgAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTc                                                                                                      >  2:4049394/1‑150 (MQ=255)
                                                  tcgAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTcg                                                                                                     <  2:2458863/150‑1 (MQ=255)
                                                   cgAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTagc                                                                                                    >  2:4169668/1‑150 (MQ=255)
                                                        aTGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCt                                                                                               >  1:667802/1‑150 (MQ=255)
                                                         tGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCtt                                                                                              <  2:4579051/150‑1 (MQ=255)
                                                         tGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCtt                                                                                              >  1:213777/1‑150 (MQ=255)
                                                         tGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCtt                                                                                              <  2:3177647/150‑1 (MQ=255)
                                                           aaTCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTAt                                                                                            <  1:2653803/150‑1 (MQ=255)
                                                           aaTCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTAt                                                                                            <  1:224858/150‑1 (MQ=255)
                                                             tCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATcc                                                                                          <  2:2827573/150‑1 (MQ=255)
                                                              cACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCa                                                                                         <  1:1952047/150‑1 (MQ=255)
                                                               aCCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAg                                                                                        <  2:2140082/150‑1 (MQ=255)
                                                               aCCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAg                                                                                        <  1:2652535/150‑1 (MQ=255)
                                                                ccAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGa                                                                                       >  2:2237091/1‑150 (MQ=255)
                                                                    aCTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCa                                                                                   >  2:28010/1‑150 (MQ=255)
                                                                    aCTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCa                                                                                   >  2:1207698/1‑150 (MQ=255)
                                                                      tGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATc                                                                                 <  1:4509824/150‑1 (MQ=255)
                                                                       gCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATcg                                                                                >  2:1422663/1‑149 (MQ=255)
                                                                       gCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCt                                                                                >  2:3881831/1‑150 (MQ=255)
                                                                       gCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCt                                                                                >  2:4160115/1‑150 (MQ=255)
                                                                       gCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCt                                                                                <  2:3634994/150‑1 (MQ=255)
                                                                         ggTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTAGCGATCTTATCCAGACCCAACTTa                                                                              >  1:2928795/1‑150 (MQ=255)
                                                                           tataATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAgg                                                                            >  2:3563484/1‑150 (MQ=255)
                                                                           tataATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAgg                                                                            <  2:1695513/150‑1 (MQ=255)
                                                                            ataataAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAggg                                                                           >  1:3244541/1‑150 (MQ=255)
                                                                            ataataAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAggg                                                                           >  2:3168074/1‑150 (MQ=255)
                                                                              aataaGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGAt                                                                         >  1:311481/1‑150 (MQ=255)
                                                                                taaGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATtc                                                                       >  2:1745548/1‑150 (MQ=255)
                                                                                 aaGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATtct                                                                      >  2:3355920/1‑150 (MQ=255)
                                                                                 aaGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATtct                                                                      >  1:882149/1‑150 (MQ=255)
                                                                                  aGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATtctc                                                                     >  2:1329882/1‑150 (MQ=255)
                                                                                   gCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCa                                                                    <  1:3407324/150‑1 (MQ=255)
                                                                                   gCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCa                                                                    <  1:329963/150‑1 (MQ=255)
                                                                                   gCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCa                                                                    <  1:1706799/150‑1 (MQ=255)
                                                                                     ttAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAAt                                                                  >  1:4347439/1‑150 (MQ=255)
                                                                                     ttAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAAt                                                                  >  1:4018687/1‑150 (MQ=255)
                                                                                            aGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGt                                                           >  2:2966727/1‑150 (MQ=255)
                                                                                             gCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGtt                                                          <  1:4474777/150‑1 (MQ=255)
                                                                                             gCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGtt                                                          <  1:1383454/150‑1 (MQ=255)
                                                                                               ttGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGttat                                                        <  1:751161/150‑1 (MQ=255)
                                                                                               ttGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGttat                                                        <  1:2353532/150‑1 (MQ=255)
                                                                                                 gatgatGCATTTCCGGTCAGAGTGGTATCAATCTAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGttatta                                                      <  1:4754216/150‑1 (MQ=255)
                                                                                                 gatgatGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGttatta                                                      <  2:1175021/150‑1 (MQ=255)
                                                                                                  atgatgCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTtattat                                                     <  1:3664215/150‑1 (MQ=255)
                                                                                                   tgatgCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTattatt                                                    <  1:2968972/150‑1 (MQ=255)
                                                                                                   tgatgCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTattatt                                                    <  1:4204482/150‑1 (MQ=255)
                                                                                                     atgCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGc                                                  >  1:1298489/1‑150 (MQ=255)
                                                                                                       gCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTTCca                                                >  1:3365319/1‑150 (MQ=255)
                                                                                                       gCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCca                                                >  2:4514580/1‑150 (MQ=255)
                                                                                                         aTTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCcatc                                              <  2:843501/150‑1 (MQ=255)
                                                                                                          tttCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCcatca                                             >  1:2577690/1‑150 (MQ=255)
                                                                                                              cGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCCATCATTCg                                         <  2:2569485/150‑1 (MQ=255)
                                                                                                               ggTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCCATCATTCGt                                        <  1:2799482/150‑1 (MQ=255)
                                                                                                                  cAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTTGTTATTATTGCCATCATTCGTGAc                                     >  1:4277776/1‑150 (MQ=255)
                                                                                                                  cAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCCATCATTCGTGAc                                     <  2:3869545/150‑1 (MQ=255)
                                                                                                                    gagTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCCATCATTCGTGACGt                                   >  2:4835805/1‑150 (MQ=255)
                                                                                                                       tGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCCATCATTCGTGACGttat                                >  2:1585534/1‑150 (MQ=255)
                                                                                                                              aaTCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCCATCATTCGTGACGTTATTACCAGt                         >  2:798099/1‑150 (MQ=255)
                                                                                                                               aTCCAACTGATGCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCCATCATTCGTGACGTTATTACCAGTa                        >  1:1582560/1‑150 (MQ=255)
                                                                                                                                tCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCCATCATTCGTGACGTTATTACCAGTaa                       <  1:3737413/150‑1 (MQ=255)
                                                                                                                                      tGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCCATCATTCGTGACGTTATTACCAGTAAGTGTGa                 >  2:3270972/1‑150 (MQ=255)
                                                                                                                                          gCCACTGCTGCTCCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCCATCATTCGTGACGTTATTACCAGTAAGTGTGATGtt             <  1:4235111/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GGCATCATCAGTAGTCCGTTTTTTGAAACCCATACCGATATTACTTGTCGTCGAAGATGAATCACCAGACTGCGGTATAATAAGCTTAGGTGAGCTTGATGATGCATTTCCGGTCAGAGTGGTATCAATCCAACTGATGCCACTGCTGCACCCACTGGCAACCAGTTTAAAATCAGCCTGAGATTCTGTCGTTTTATTCGCGATCTTATCCAGACCCATCTTAGGGATTCTCAATGTGTAGTTATTATTGCCATCATTCGTGACGTTATTACCAGTAAGTGTGATGTTACAGGTTGTCG  >  CP009273/148895‑149193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A