Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F98 I0 R1
|
799 |
294.1 |
9752082 |
92.2% |
8991419 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
169,937 |
C→A |
26.0% |
intergenic (+6/+152) |
fhuB → / ← hemL |
fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 169,937 | 0 | C | A | 26.0%
| 586.8
/ 33.6
| 252 | intergenic (+6/+152) | fhuB/hemL | fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| Reads supporting (aligned to +/- strand): ref base C (26/138); new base A (61/2); total (112/140) |
| Fisher's exact test for biased strand distribution p-value = 1.02e-31 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 258 total aligned reads displayed.
GCGCTGGTGGGTGGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTG > CP009273/169788‑170086
|
gcgcTGGTGGGTGGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTc < 2:868458/150‑1 (MQ=255)
gcgcTGGTGGGTGGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTc < 2:46914/150‑1 (MQ=255)
gcgcTGGTGGGTGGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTc < 2:1773381/150‑1 (MQ=255)
gcTGGTGGGTGGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCa < 1:4631347/150‑1 (MQ=255)
gcTGGTGGGTGGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCa > 2:2287539/1‑150 (MQ=255)
tggtggGTGGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTACaaa > 1:3787660/1‑148 (MQ=255)
tggtggGTGGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTGCata > 1:4677108/1‑150 (MQ=255)
ggtgggtgGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCatat < 1:4876010/150‑1 (MQ=255)
gtgggtggTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTACAaata > 1:2381155/1‑150 (MQ=255)
tgggtggTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATaa < 1:2528894/150‑1 (MQ=255)
gtggtTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGTTTTTTTAAATATaaaag > 1:3348718/1‑147 (MQ=255)
agtggtgGTGTTGGCTGATTGGTGGGGGGGTTTGGTGTTGTTTCCTTTCCAGATCCGGGGGGGGCTGATGTCAACATTTATGGGCGCGCATTATTTTATCTATTTGTTTAGAAAGCAGAGCCTTTAATTTTTCCATATAA‑CGGCCCTGTa < 1:87566/145‑1 (MQ=255)
ctgctgGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTACATATAA‑AAGCCCAGTaa > 1:3187471/1‑149 (MQ=255)
tgctgGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGTATTTTTAAAAATAA‑AAGCCCAGTAca > 1:2077705/1‑149 (MQ=255)
gctgGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTTTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGc < 1:1933968/150‑1 (MQ=255)
gctgGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGc < 2:715439/150‑1 (MQ=255)
tgGTGTTCGCTGAGTGGTGTGGGGGGTTGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACATTTATCGGCGCGCAATATTTTATCTATTTGTTGAGAAAGCAGAGCCTTTAATTTTTCCATATCA‑CGGCCCTGTACGCCt < 1:2939997/150‑1 (MQ=255)
tgGTGTTCGCTGAGTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCt < 1:3861324/150‑1 (MQ=255)
tgGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTACATAAAA‑AGGCCCGGTACGcca > 1:1467884/1‑149 (MQ=255)
tgGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCt < 1:2230465/150‑1 (MQ=255)
tgGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGAATTTTTACATATAA‑AAGCCCGGTAAGcca > 2:656609/1‑149 (MQ=255)
ggTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGTGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAAATTTTAAATAAAA‑AGGACCTGTAAGCCTg > 2:4333631/1‑150 (MQ=255)
ggTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGTATTTTTTCTTATTA‑ACGCCCCGTTCGccag > 1:80626/1‑148 (MQ=255)
gtgtTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTgg < 1:1514621/150‑1 (MQ=255)
gtgtTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTACATATAA‑ACGCCCTGTAAGCCTgg > 2:2977637/1‑150 (MQ=255)
tgtTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTACATATAA‑AAGCCCAGTTAGCCTggt > 1:4319347/1‑149 (MQ=255)
gtTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTACATATAA‑CCGCCCTGTACGCCTGGAc > 2:1910941/1‑150 (MQ=255)
cGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTAAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGa < 1:214323/150‑1 (MQ=255)
gCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGAt < 2:1831644/150‑1 (MQ=255)
cTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATa < 2:965379/150‑1 (MQ=255)
tGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGAATATTTTCATAAAA‑ACACCCCGTAAGCccggccggcaaa > 1:4092706/1‑146 (MQ=255)
gtgGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTa < 2:792509/150‑1 (MQ=255)
tgGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTTAATATAA‑AGGCCCAGTAAGCCAGGACCGATAAAGAGtttta > 1:3092913/1‑148 (MQ=255)
tgGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTATGCCTGGACGGATAAAGCGTTTAc < 1:3593139/150‑1 (MQ=255)
cGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTTAATATAA‑AGGCCCGGTACGCCAGGCCGGCTAAAGCGGTTAAGCGa > 1:3502500/1‑150 (MQ=255)
gATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACa < 1:295295/150‑1 (MQ=255)
gATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACa < 1:1188683/150‑1 (MQ=255)
ggTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTCTCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCAGATCA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACg < 1:2177974/150‑1 (MQ=255)
ggTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACg < 2:1178608/150‑1 (MQ=255)
tGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTTCAGATAA‑AGGCCCAGTAAGCCAGGACGGCTAAAGCGTTTTAGCGACAACCGATGc > 1:4716661/1‑150 (MQ=255)
tttCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTACATATAA‑AGGCCCGGTAAGCCGGGACGGATAAAGCGTTTAAGCGACAACGGATGccc > 2:3428234/1‑150 (MQ=255)
tttCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGccc < 2:3389868/150‑1 (MQ=255)
cattccaGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTGCAGATAA‑ACGCCCGGGACCCCGGGGCGGGGAAACCCGTTACGCCCCAACCGAGGcccccag > 2:4166012/1‑146 (MQ=255)
cattccaGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTACAAAAAA‑AAGCCCATGACGCCAGGACGGATAAATAGGTTTAGCGACAACCGCTGCCCCATg > 1:1095354/1‑150 (MQ=255)
tccaGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGAATTTTTGCATAAAA‑ACGCCCCGGAAGCCCGGACGGGGAAAAAGGTTACGCGCCCACCGCTGcccccggcga > 1:1395337/1‑143 (MQ=255)
accaGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTGGAGAACGCAGCGCCTTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGa < 1:1612277/149‑1 (MQ=255)
ccaGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGAATTTTTGCATAAAA‑ACGCCCTGTAAGCCAGGGAGGATAAAACGGTTAAGCGACAACCGATGCCCCCTGCGAc > 1:1522587/1‑150 (MQ=255)
caGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTTCATAAAA‑AAGCCCGGTAAGCCTGGACGGATAAAGCGTTTAAGCGACAACCGAATCCCCCTGCGaag > 1:1451512/1‑148 (MQ=255)
caGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACg < 2:3286919/150‑1 (MQ=255)
caGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACg < 1:75474/150‑1 (MQ=255)
caGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGAATTTTTTAAAAAAA‑CTGGCCAGTAAGCCTGGTCGGTGAAATCGTTTAATCGACAAACGATGCCCCAAGCGACg > 1:978443/1‑150 (MQ=255)
gATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTTCATATAA‑AGGCCCTGTAAGCCAGGGCGGGTAAATCGTTTTAGCGACAACGGGTGCCCGATGCGAccca > 1:2730159/1‑147 (MQ=255)
cccGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGgc < 1:4577332/150‑1 (MQ=255)
cccGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑AGGCCCAGTACGCCTGGACGGCTAAAGCGTTTACGCGACAACGGATGCCCGCTGCGACGCTGgc > 2:2796476/1‑150 (MQ=255)
ggcggGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTCCCAAAAA‑AGGCCCGGTACGCCAGGCCGGATAAAGCGGTTACGCGACCACCGATGCCCCAGGCGACGCTGGcgcg > 2:2130348/1‑150 (MQ=255)
ggggCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTACAAATAA‑CGGCCCTGTACGCCTGGACGGATAAATCGGTTAAGCGACAACCGATGCCCGATGCGACGCTGGCGCGTCt > 2:3077377/1‑150 (MQ=255)
ggCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTTCATAAAA‑AGGCCCAGTACGCCAGGACGGATAAATCGGTTTAGCGACAAACGATTACCCAAGCGACGCTGGCGCGTCTTa > 2:164694/1‑150 (MQ=255)
ggCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTa < 2:4471341/150‑1 (MQ=255)
ggCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTa < 1:2778370/150‑1 (MQ=255)
ctgctgTCACCCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATc < 2:3513163/150‑1 (MQ=255)
tgctgTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCg < 1:656566/150‑1 (MQ=255)
gctgTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCgg < 2:2603487/150‑1 (MQ=255)
gTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTACATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGGTTACGCGCCAACGGATGCCCCATGCGACGCTGGCGCGTCGTATAGGGcc > 2:4784196/1‑150 (MQ=255)
tCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCt < 1:2394607/150‑1 (MQ=255)
tCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTACAAAAAA‑AAGCCCAGTACACCAGGTCCGATAAAACCTTTAAGCGACAAACGATGACCCAAGCGACGCAGGCGCGGCATAAAGGGccg > 1:341549/1‑149 (MQ=255)
cTTTATCGGCGCTCAATATTTTATCTATTTTTTGAGAAAGCAGAGCCTTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACaaa < 1:1335108/150‑1 (MQ=255)
cTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAAATTTTCCATATAA‑AGGCCCAGTACGCCTGGACGGATAAAGCGTTTAAGCGACAACGGATTCCCGATGCGACGCTGGCGCGTCTTATAGGGCCAACaaa > 2:2393863/1‑150 (MQ=255)
tATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTACATAAAA‑ACGCCCTGTAAGCCTGGACGGATAAATCGTTTACGCGACAAACGATTCCCGAAGCGACGCAGGCGCGTCTTATAGGGCCTACaaaacg > 2:291631/1‑147 (MQ=255)
cgcCATATTTTATCTATTTGTTGATAAAGCTGCGCTGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTCCGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAAt < 1:1735430/150‑1 (MQ=39)
cgcCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTAATTTTACAAATAA‑ACGCCCAGTACGCCGGGACGGGTAAAAAGTTTTACAGCCAAACCATTCCCCAATCGAAGCTGGCGCGGCGTATAGGGCCAAAAAAAAGccccccaa > 1:4421218/1‑146 (MQ=255)
tatTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTACATAAAA‑CGGCCCGGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATTCCCGATGCGACGCTGGCGCGTCTTATCGGGCCGAAAAACCGCCCCCAAACGTAg > 2:3194210/1‑150 (MQ=255)
tatTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTACAAATAA‑AGGCCCTCTAACCCTGGACGGATAAAGCGTTTACGCGACAAAGGATGCCCCAAGCGACCCGTGCGCGTCATATAGGGCCTACAAAAGGCCCCCAAACGTAg > 2:143499/1‑150 (MQ=255)
tatTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAAATTTTCCAAATAA‑CGGCCCAGTACGCCTGGACGGATAAAGCGTTTACGCGACAAAGGATTCCCGATTCGACGCTGGCGCGTCTTATCGGGCCAACAAAAGGCCCCGaaaaggag > 2:1527092/1‑144 (MQ=255)
aTCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGa < 2:4825834/150‑1 (MQ=255)
tCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGAt < 2:2817757/150‑1 (MQ=255)
cTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATa < 1:249550/150‑1 (MQ=255)
tgttgAGAAAGCAGAGCCGTTAATTTTTACATATAA‑AGGCCCAGTACGCCTGGACGGATAAAGCGTTTACGCGACAAAGGATTCCCCATGCGACGCTGGCGCGTCTTATAGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCg > 2:4374506/1‑150 (MQ=255)
gttgAGAAAGCAGAGCCGTTAAATTTTACAAAAAA‑AGGCCCAGTACGCCGGGACGGAAAAAGCGTTTAAGCCACAAACGAAGCCCGAATCGACGCTTGCGCGTCATATCGGGCCTAAAAACCGCCCCCCATAGGAGGTCGGATAAGTCGt > 2:3082612/1‑150 (MQ=255)
ttgAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGtt < 2:275079/150‑1 (MQ=255)
ttgAGAAAGCAGAGCCGTTAATTTTTACAAATAA‑AAGCCCAGGAAGCCGGGACGGGTAAAGAGTTTAAGCGACAAACGATTCCCGAAGCGACGCAGGCGCGTCTTATACGGCCAACAAACCGCCCCCAAACGTAGGGCGGATAAGGCGtt > 2:453271/1‑150 (MQ=255)
gcgaACGCAGAGCCTTTAATTTTTCCATAAAC‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCa < 1:2455000/148‑1 (MQ=255)
gagaAAGCAGAGCCGTTAATTTTTACATATAA‑ACGCCCGGTAAGCCGGGGCCGATAAAACGTTTAAGCGACAACGGATGGCCCCTGCGGCGCTGGCGCGGCGTATAGGGCCAACAAAAGGCCCCCCAACGGAGGTCGGGGAAGGCggtaa > 2:543305/1‑146 (MQ=255)
agaAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAc < 2:851933/150‑1 (MQ=255)
aaGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcgcc < 2:2165598/150‑1 (MQ=255)
agagCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCAt < 2:3360116/150‑1 (MQ=255)
cgCCGTTATTTTTTCCATATAA‑CGGCCCGGTACGCCTGGCCGTATAAAGGGTTTACGCGACAAGGGATGCCCGATGCGACGCTGGCGCGTCTTAGCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATcc < 1:3276156/149‑1 (MQ=38)
cgCCGTTAATTTTTCCATAGAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATcc < 1:1712406/149‑1 (MQ=255)
agCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGGTAAGGCGTTCACGCCGCATcc > 1:292624/1‑150 (MQ=255)
agCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGGCTTATCGGGCCGACAAACGGCCCCGAATCGTAGGTCGGATAATGCGTTCACGCCGCATcc > 1:3275613/1‑150 (MQ=255)
ccGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGa > 1:1858777/1‑150 (MQ=255)
ccGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGa > 1:4310819/1‑150 (MQ=255)
cGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAc > 2:4486423/1‑150 (MQ=255)
cGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAc < 2:4848950/150‑1 (MQ=255)
ttAATTTTTCCATAGAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACaa < 2:197340/150‑1 (MQ=255)
tgaaTTGTTCCCTATCC‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACaa < 2:3977342/148‑1 (MQ=255)
taTTTTTCCAAACACCCGGCCCTGTACGCCTGCACGGATAACGGGTTTACGCTACAACGGATGCCCGAGGCGACGCTGGCGCGTCTTATCGGGCCAACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACaaa < 1:416485/149‑1 (MQ=37)
aTTTTGACATATAA‑CGGCCCTGTACGCCTGGACGTATAATGCTTTTACGCGACAACGGTTGCCCGATGCGACGCTGGCGCGTCTTATCGGGCATACAAACGGCCCCGAATCGTAGGTCGGATAAGGCTTTCACGCCGCATCCGACAAAcc < 1:1037364/150‑1 (MQ=38)
tttCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATg < 2:3961974/150‑1 (MQ=255)
tttCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAAGCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATg > 2:3561989/1‑150 (MQ=255)
ttCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGACTCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGc > 2:525795/1‑150 (MQ=255)
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GCGCTGGTGGGTGGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAA‑CGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTG > CP009273/169788‑170086
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
