Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F98 I0 R1
|
799 |
294.1 |
9752082 |
92.2% |
8991419 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,292,972 |
C→A |
23.4% |
R29L (CGC→CTC) |
napH ← |
ferredoxin‑type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,292,972 | 0 | C | A | 23.4%
| 836.2
/ 224.0
| 336 | R29L (CGC→CTC) | napH | ferredoxin‑type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) |
| Reads supporting (aligned to +/- strand): ref base C (127/130); new base A (43/36); total (170/166) |
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
Only 100 of 338 total aligned reads displayed.
CCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTCCCCTTTCGCCAGTGACAGCGG > CP009273/2292825‑2293121
|
tGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTa < 1:186354/150‑1 (MQ=255)
gCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAac > 1:2349165/1‑150 (MQ=255)
aGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACAcc > 2:2156489/1‑150 (MQ=255)
cTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGc > 2:3876131/1‑150 (MQ=255)
tttGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGcc < 1:78929/150‑1 (MQ=255)
tGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCaa > 1:1601230/1‑150 (MQ=255)
tGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCaa < 2:1947053/150‑1 (MQ=255)
gTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCACAATCATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGa > 2:3262142/1‑150 (MQ=255)
gTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGa < 1:2764550/150‑1 (MQ=255)
gTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGa < 1:2289612/150‑1 (MQ=255)
catcaGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACt < 2:2941308/150‑1 (MQ=255)
aatcaGCGGATCGGACAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGACGAGCAAGATCCACACACAAAACCATTGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGTCGACGTAACACCAGCCAACGGTGACt > 2:731142/2‑150 (MQ=255)
atcaGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTg < 2:2598299/150‑1 (MQ=255)
caGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTgcg < 2:96615/150‑1 (MQ=255)
aGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTgcgc > 2:1057957/1‑150 (MQ=255)
cGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGcca < 2:2832232/150‑1 (MQ=255)
aTCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAACCCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGccacca < 2:3063622/150‑1 (MQ=255)
tCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAg > 1:2383067/1‑150 (MQ=255)
tCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATACCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGAGCCACCAg < 1:3090316/150‑1 (MQ=255)
tCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCtt < 1:1088306/150‑1 (MQ=255)
tCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCtt < 1:953153/150‑1 (MQ=255)
tCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCtt > 1:1199004/1‑150 (MQ=255)
tCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCtt > 2:2636196/1‑150 (MQ=255)
aGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCtttt < 2:1258680/150‑1 (MQ=255)
ggAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTtc > 2:226134/1‑150 (MQ=255)
aaCGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTtctc > 2:1683363/1‑150 (MQ=255)
cGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCTCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCa > 1:719660/1‑150 (MQ=255)
cGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCa < 1:1143782/150‑1 (MQ=255)
cGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCa < 1:2698758/150‑1 (MQ=255)
gaagaaCAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTc < 1:3681537/150‑1 (MQ=255)
gAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTc < 1:4771927/150‑1 (MQ=255)
gAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTc > 1:281285/1‑150 (MQ=255)
aaTAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTcg < 2:2419408/150‑1 (MQ=255)
aTAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTcgc > 1:817779/1‑150 (MQ=255)
aTAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTcgc > 2:636021/1‑150 (MQ=255)
aTAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTcgc > 2:4493081/1‑150 (MQ=255)
aaCAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCgcgc > 1:456608/1‑150 (MQ=255)
aaCAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCgcgc > 1:3740289/1‑150 (MQ=255)
cAGGCTACTGCTGTAGTTGCCGTGCACGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGccc > 2:1644076/1‑150 (MQ=255)
cAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACCTCCCCAGCACGAAGAACTGACAACGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGccc < 2:2904992/150‑1 (MQ=255)
cAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGccc < 1:2963853/150‑1 (MQ=255)
aGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCg > 1:1179525/1‑150 (MQ=255)
ggCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCACACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACACAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCgg < 2:3434265/150‑1 (MQ=255)
tACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTGTTTTCTCCAGCGCCTCGCGCCCGGCGt > 2:4787700/1‑150 (MQ=255)
tACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGt < 2:1292035/150‑1 (MQ=255)
tgctgTAGTTGCCGTGCAAGATCCACACACCAAACCATGGTCCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCAc < 2:3368461/150‑1 (MQ=255)
tgctgTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCAc < 2:368648/150‑1 (MQ=255)
gctgTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACg > 2:383230/1‑150 (MQ=255)
gctgTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACg < 2:3956034/150‑1 (MQ=255)
ctgTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGt < 1:3169527/150‑1 (MQ=255)
tgTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGtt > 1:4843480/1‑150 (MQ=255)
tgTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGtt > 1:3974720/1‑150 (MQ=255)
tgTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGtt > 1:2273886/1‑150 (MQ=255)
tgTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGACTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGtt > 1:1516207/1‑150 (MQ=255)
gTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGttt > 1:597407/1‑150 (MQ=255)
gTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGttt > 1:2532345/1‑150 (MQ=255)
tAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTa < 1:1902543/150‑1 (MQ=255)
aGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTAc > 2:1378044/1‑150 (MQ=255)
gTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACg > 2:2039729/1‑150 (MQ=255)
gCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGAtt > 2:3174225/1‑150 (MQ=255)
aaGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCAtt > 1:1059414/1‑150 (MQ=255)
aaGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCAtt > 1:520206/1‑150 (MQ=255)
aaGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCAtt > 1:2367475/1‑150 (MQ=255)
aGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTg > 2:359590/1‑150 (MQ=255)
ccACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTcc < 2:54249/150‑1 (MQ=255)
acacCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTc < 1:3532242/150‑1 (MQ=255)
acCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTcca < 1:1267921/150‑1 (MQ=255)
ccAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCCGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTccag < 1:680628/150‑1 (MQ=255)
aaaCCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTccagcc < 1:4257169/150‑1 (MQ=255)
aaaCCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTccagcc < 1:880455/150‑1 (MQ=255)
aaCCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTccagcca < 2:1963253/150‑1 (MQ=255)
ccATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCcagccagc > 1:3630561/1‑150 (MQ=255)
cATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCagccagcc > 2:1446232/1‑150 (MQ=255)
ggACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGaa < 2:1779994/150‑1 (MQ=255)
ggACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGaa > 1:3445337/1‑150 (MQ=255)
ggACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGaa > 2:2752097/1‑150 (MQ=255)
gcaCCGCTCACAACCATCCCCACCACGAAGAACTGCCAAAGGCGACGGAACACCAGCCAACGGGGACGGCGCCACCAGCCATTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGat < 2:4234682/148‑2 (MQ=255)
gACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAg < 2:4033844/150‑1 (MQ=255)
ccGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCg > 2:149129/1‑150 (MQ=255)
ccGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCg > 2:150444/1‑150 (MQ=255)
ccGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCg > 2:312821/1‑150 (MQ=255)
ccGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCg < 1:2156489/150‑1 (MQ=255)
cAAACACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAAt < 1:4132618/150‑1 (MQ=255)
cAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAAt < 2:270858/150‑1 (MQ=255)
aaaCATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGt < 2:109806/150‑1 (MQ=255)
aCATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGa > 2:4193137/1‑150 (MQ=255)
cccAGCACGAAGAACTGACAAAGGAGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTaa > 2:3922571/1‑150 (MQ=255)
aCGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTcccc < 1:2542752/150‑1 (MQ=255)
cGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTCCCCt < 1:3891198/150‑1 (MQ=255)
gaagaaCTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTCCCCtt < 1:4056982/150‑1 (MQ=255)
gaagaaCTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTCCCCtt < 2:89536/150‑1 (MQ=255)
aCTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTCCCCTTTCGcc > 1:4434289/1‑150 (MQ=255)
aCTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTCCCCTTTCGcc > 2:4619438/1‑150 (MQ=255)
aCTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTCCCCTTTCGcc < 1:1378044/150‑1 (MQ=255)
cAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTCCCCTTTCGCCAGTGa < 1:3494346/150‑1 (MQ=255)
cAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTCCCCTTTCGCCAGTGa > 2:4120646/1‑150 (MQ=255)
aaaGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTCCCCTTTCGCCAGTGAc > 1:4823569/1‑150 (MQ=255)
aaGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCTGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTCCCCTTTCGCCAGTGACa < 2:4180667/150‑1 (MQ=255)
aaGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTCCCCTTTCGCCAGTGACa < 1:3046197/150‑1 (MQ=255)
aGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTCCCCTTTCGCCAGTGACAg < 2:4823569/150‑1 (MQ=255)
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CCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAGGCTACTGCTGTAGTTGCCGTGCAAGATCCACACACCAAACCATGGACCGCTCAAAAACATCCCCAGCACGAAGAACTGACAAAGGCGACGTAACACCAGCCAACGGTGACTGCGCCACCAGCCTTTTTTCTCCAGCGCCTCGCGCCCGGCGTCACGTTTACGATTTGCCATTGTTCCCCTCCAGCCAGCCGAAGCGGTAATGGTGACCTAACTCCCCTTTCGCCAGTGACAGCGG > CP009273/2292825‑2293121
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
