Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F98 I0 R1
|
799 |
294.1 |
9752082 |
92.2% |
8991419 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,343,941 |
C→A |
27.7% |
D184Y (GAT→TAT) |
glpQ ← |
periplasmic glycerophosphodiester phosphodiesterase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,343,941 | 0 | C | A | 27.7%
| 402.6
/ 153.4
| 188 | D184Y (GAT→TAT) | glpQ | periplasmic glycerophosphodiester phosphodiesterase |
| Reads supporting (aligned to +/- strand): ref base C (65/71); new base A (17/35); total (82/106) |
| Fisher's exact test for biased strand distribution p-value = 7.15e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
Only 100 of 212 total aligned reads displayed.
ACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTCAAAGGTGTGCACCCGGAAGTCGGACTTACCCATTGGGAAACGCC > CP009273/2343793‑2344090
|
aCCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATcc < 2:2411050/150‑1 (MQ=255)
aCCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATcc > 1:2859818/1‑150 (MQ=255)
cAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATcctt < 2:3695520/150‑1 (MQ=255)
cAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATactt < 2:4383293/150‑1 (MQ=255)
cAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATactt > 2:4011563/1‑150 (MQ=255)
aGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATccttc > 2:1471730/1‑150 (MQ=255)
aGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATccttc < 1:3214469/150‑1 (MQ=255)
gATTGAGCTCCATGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATacttcc < 2:1406868/150‑1 (MQ=255)
aTTGAGCTCCATGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATacttccc < 1:1059758/150‑1 (MQ=255)
gAGCTCCATGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATccttcccttc < 1:4819908/150‑1 (MQ=255)
cATGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCtgatg > 2:1130965/1‑150 (MQ=255)
aTGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCtgatga < 2:1009837/150‑1 (MQ=255)
tGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTgatgat < 1:2660667/150‑1 (MQ=255)
tGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTgatgat < 1:2659708/150‑1 (MQ=255)
cccATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATgg < 2:767317/150‑1 (MQ=255)
cccATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATgg > 1:426110/1‑150 (MQ=255)
ccATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGa > 2:1322018/1‑150 (MQ=255)
cATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACAGGTGTAACCATATTTCTTCAGCACTACCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGaa > 1:1842553/1‑150 (MQ=255)
gTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGgcg > 1:3651994/1‑150 (MQ=255)
ttCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGgcgc > 1:3542819/1‑150 (MQ=255)
tCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCt < 1:4690159/150‑1 (MQ=255)
tCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCt < 2:684162/150‑1 (MQ=255)
ccAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCtt < 1:4161875/150‑1 (MQ=255)
aGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTg < 2:3701617/150‑1 (MQ=255)
cTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCACTATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGAt > 1:1724715/1‑150 (MQ=255)
aTTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTc > 2:3097297/1‑150 (MQ=255)
aTTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTc < 2:386008/150‑1 (MQ=255)
ttCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCt > 1:2955126/1‑150 (MQ=255)
ttCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCt < 2:4072718/150‑1 (MQ=255)
tCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTg > 2:264211/1‑150 (MQ=255)
tAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGAt < 1:1996729/150‑1 (MQ=255)
tAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGAt < 1:1997072/150‑1 (MQ=255)
aaTACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATa < 1:880066/150‑1 (MQ=255)
aaTACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATa < 1:3176702/150‑1 (MQ=255)
aCGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAAt < 1:979831/150‑1 (MQ=255)
aCGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAAt < 1:2161930/150‑1 (MQ=255)
aCGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAAt < 1:219948/150‑1 (MQ=255)
cGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTATACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACAACGGCGCTTTGATTTCTGGATAAATa > 1:1312734/1‑150 (MQ=255)
cTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATAcc < 1:66716/150‑1 (MQ=255)
ttCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCg < 2:1813063/150‑1 (MQ=255)
ttCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCg > 1:3784778/1‑150 (MQ=255)
tCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGa < 1:3945183/150‑1 (MQ=255)
aGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGata > 1:4602101/1‑150 (MQ=255)
aGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGata < 1:1492967/150‑1 (MQ=255)
aGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGata < 1:4731640/150‑1 (MQ=255)
cTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATAtt > 1:3556877/1‑150 (MQ=255)
tcatcaGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCGGTGATTTATGGATAAATAACGATAttt > 1:4572038/1‑150 (MQ=255)
catcaGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATAtttt < 2:4861865/150‑1 (MQ=255)
catcaGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATAAAGATAtttt > 1:3291487/1‑150 (MQ=255)
atcaGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATAttttt < 1:2310064/150‑1 (MQ=255)
caGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTcc < 2:630097/150‑1 (MQ=255)
aGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTccc < 1:3243968/150‑1 (MQ=255)
gCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCg < 1:739745/150‑1 (MQ=255)
cATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCgg < 2:3235974/150‑1 (MQ=255)
tCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTa < 1:3196738/150‑1 (MQ=255)
cAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTag < 2:2734759/150‑1 (MQ=255)
aaaaCATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTaga < 1:680936/150‑1 (MQ=255)
aaCATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGt < 1:365828/150‑1 (MQ=255)
aaCATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGt < 1:2596251/150‑1 (MQ=255)
aaCATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGt < 2:4457265/150‑1 (MQ=255)
tGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGAttt < 2:4043365/150‑1 (MQ=255)
gCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTa < 1:1054819/150‑1 (MQ=255)
cAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTaa < 1:2773469/150‑1 (MQ=255)
cAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTaa > 2:2971931/1‑150 (MQ=255)
aaCTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACAGATATTTTTCCCGGTAGAGTGATTTAACCCCTg > 2:3476218/1‑150 (MQ=255)
aCTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGa < 1:3080981/150‑1 (MQ=255)
tttATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAAc < 1:3634470/150‑1 (MQ=255)
tATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACaa > 2:384318/1‑150 (MQ=255)
gTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTc < 2:2498507/150‑1 (MQ=255)
gTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTc < 2:2934048/150‑1 (MQ=255)
cTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGAAATTTTTCCCGGTAGAGTGATTTAAACCCTGAACAAATTCaa > 2:285348/1‑150 (MQ=255)
tttACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAAt < 1:2330231/150‑1 (MQ=255)
tttACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAAt < 2:4595833/150‑1 (MQ=255)
tACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAAtct < 2:4423666/150‑1 (MQ=255)
tACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGTTTTCTGGATAAATAACGATATTTTTACCGGTAGAGTGATTTAAACCCAGAAAAAATTAAAtat > 1:190635/1‑148 (MQ=255)
aCCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCGTTGATTTCTGGGTAAATACCCATATTTTTACCGGTAGAGTGATTTAACCCCAGAACAAATTCAAactc > 1:4145631/1‑150 (MQ=255)
ccGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATctct < 1:761682/150‑1 (MQ=255)
ggTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCtcttc > 2:456562/1‑150 (MQ=255)
gtgtAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGTTTTCTGGGTTAAAAACGATATTTTTGCCGGTAGAGGGATTTAAACCCGGTACCAATTCAAtagcgtat > 1:3362762/1‑143 (MQ=255)
gtgtAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCtcttct < 1:4423302/150‑1 (MQ=255)
gtAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCttcttc < 1:4331020/150‑1 (MQ=255)
gtAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCttcttc < 1:4404873/150‑1 (MQ=255)
atatTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTTATGATGGAAGCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTGTAGTGATTTAACCCCAGAACAAAGTCAATCTATTATTCAAAgtt > 2:3489339/1‑148 (MQ=255)
tatTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTCAAAGgtg > 1:1112504/1‑150 (MQ=255)
cttcAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTAAAAGGTGTGCAc > 1:2581252/1‑150 (MQ=255)
ttcAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTCAAAGGTGTGCAcc > 2:2802766/1‑150 (MQ=255)
tcAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTCAAAGGTGTGCAccc > 2:2708929/1‑150 (MQ=255)
cAGCACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTTATTTATTGATAAATAACGATATTTTTACCCGTATATTGATTTAAACCCATAACAAAATAAAACTATTATTAAAAGGTGTGGAcccc > 1:4510377/1‑149 (MQ=255)
aGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAAAAACGATAATTTTCCCGGTAGAGTGATTTAACCCCAGAACAAAATCAAACACATCGTCAAAGGTGTGCACCCgg > 1:2522193/1‑150 (MQ=255)
aGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCGTTGATTTGTGGGTAAATACCCATATTTTTAACGGTAGAGTGATTTTACCCCAGAACAAAATCAATCTCTTCATAAAAGGTGTTCAccccg > 1:2839685/1‑148 (MQ=255)
cACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTCAAAGGTGTGCACCCGGaa < 2:3264645/150‑1 (MQ=255)
cACTTCCAGCGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTCAAAGGTGTGCACCCGGaa > 1:1547489/1‑150 (MQ=255)
cTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGTTTTCTGGATAAATACCGATATTTTTACCGGTAGAGTGTTTTAACCCCAGAACAAATTCAAACTCTTCTTCAAAGGTGTGCACCCGGAAGt > 1:3866915/1‑150 (MQ=255)
ttCCAGCGTTTGTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTCAAAGGTGTGCACCCGGAAGTc < 2:3382124/150‑1 (MQ=255)
cGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTCAAAGGTGTGCACCCGGAAGTCGGACtt < 2:4602101/150‑1 (MQ=255)
cGTTTTTGCCGCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTCAAAGGTGTGCACCCGGAAGTCGGACtt < 2:426110/150‑1 (MQ=255)
gCAATATACTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTCAAAGGTGTGCACCCGGAAGTCGGACTTACCCATTggg > 2:192553/1‑150 (MQ=255)
cAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTCAAAGGTGTGCACCCGGAAGTCGGACTTACCCATTGGGa < 2:3556877/150‑1 (MQ=255)
aaTATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTCAAAGGTGTGCACCCGGAAGTCGGACTTACCCATTGGGaa < 2:2356661/150‑1 (MQ=255)
atCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTCAAAGGTGTGCACCCGGAAGTCGGACTTACCCATTGGGAAACg > 2:3465881/1‑150 (MQ=255)
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ACCAGATTGAGCTCCATGCCCATTTTGGGTTCCAGCTCATTCTTAATACGCTTCAGCTCATCAGCATCAAAACATTGCAAATAAACTTTATCGTCTTTACCGGTGTAACCATATTTCTTCAGCACTTCCAGCGTTTTTGCCGCAATATCCTTCCCTTCCTGATGATGGAACCACGGCGCTTTGATTTCTGGATAAATACCGATATTTTTCCCGGTAGAGTGATTTAACCCCTGAACAAATTCAATCTCTTCTTCAAAGGTGTGCACCCGGAAGTCGGACTTACCCATTGGGAAACGCC > CP009273/2343793‑2344090
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
