Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F83 I1 R1
|
393 |
530.9 |
9427126 |
91.1% |
8588111 |
148.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP043523 |
1,884,013 |
A→G |
intergenic (+59/‑306) |
FTN78_chr1929 → / → FTN78_chr1930 |
Transposase TnpA/Putative UV‑damage repair protein UvrX |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP043523 | 1,884,013 | 0 | A | G | 86.9%
| 1821.7
/ 182.6
| 670 | intergenic (+59/‑306) | FTN78_chr1929/FTN78_chr1930 | Transposase TnpA/Putative UV‑damage repair protein UvrX |
| Reads supporting (aligned to +/- strand): ref base A (36/52); new base G (280/302); total (316/354) |
| Fisher's exact test for biased strand distribution p-value = 2.52e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01 |
Only 100 of 671 total aligned reads displayed.
AAGTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCACCTAGGATTAAATTAAAAAAAGGAACACCGATATTTTCAACTTTTTTAAAACCAAATCTGATAACTTTATTGAAATGAACCAAGCCAAAGCCTGTCCTGTAAAAGACATTTGATTCATTCTCTGATAGGCTCGCCTTAAG > CP043523/1883866‑1884158
|
agTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAg < 2:2190296/148‑1 (MQ=255)
agTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTACGCCAACAATGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAg > 2:4228340/1‑148 (MQ=255)
gTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGt < 2:3185829/148‑1 (MQ=255)
gTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGt < 1:1956791/148‑1 (MQ=255)
ttCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTc < 1:4532261/148‑1 (MQ=255)
ttCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTc < 2:2363055/148‑1 (MQ=255)
ttCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTACGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTc < 2:3772712/148‑1 (MQ=255)
tCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTcc > 1:100089/1‑148 (MQ=255)
tCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTcc < 1:382919/148‑1 (MQ=255)
tCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTcc > 2:1456672/1‑148 (MQ=255)
cAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCa > 1:2594939/1‑148 (MQ=255)
cAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTACGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCa > 1:1379152/1‑148 (MQ=255)
aaCTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAt < 1:4138497‑M2/148‑2 (MQ=255)
aaCTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAt < 2:2882991‑M2/148‑2 (MQ=255)
aaCTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAt > 1:3552777‑M2/1‑147 (MQ=255)
aCTCTCTTGCTTTGAATACCTCGAACAATTTTATAACACTTCTACTCCTCATTCCGCCAACAATGGTTTAACCCCAAACTAGAAAGAAGAAAATTATTTTAAGAACAGATAGCTCATTGTGTGTCTAAATATTTGACATTGGTCCaga > 2:1656112/1‑146 (MQ=255)
aCTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAta > 2:785333‑M2/1‑146 (MQ=255)
ctctctTGCTTTGAATACATCGAACAATTTTATAACAATTTTAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaat > 2:2451440/1‑145 (MQ=255)
tctTGCTTTGACTACATCGAACAATTTTATAACAATTATAATCCTCATTACGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAATATATAGCCCATTTTGTGTCTCAATATTTGACATTAGTCCaaatatt < 2:1293068/148‑7 (MQ=255)
tctTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAGAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaatatt < 1:388989/148‑7 (MQ=255)
tctTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaatatt > 1:3161902/1‑142 (MQ=255)
tctTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaata > 1:281363/1‑142 (MQ=255)
ctTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaatattg > 2:2799309/1‑141 (MQ=255)
ctTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTACGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCagaaaccc > 1:1703256/1‑141 (MQ=255)
ttGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttcta < 2:4562595‑M2/148‑9 (MQ=255)
ttGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagtta > 1:1898058‑M2/1‑135 (MQ=255)
gAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttaga < 1:438179‑M2/148‑16 (MQ=255)
aaTACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagag < 1:3952001‑M2/148‑17 (MQ=255)
aTCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtc > 1:2089917‑M2/1‑127 (MQ=255)
cGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcat < 1:3732249‑M2/148‑24 (MQ=255)
gAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTGCAtacttctaagttagagccgtcatc > 2:4612879‑M2/1‑124 (MQ=255)
aaCAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatct < 1:1981670‑M2/148‑26 (MQ=255)
aCAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctc < 2:439062‑M2/148‑27 (MQ=255)
cAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcg < 2:3579264‑M2/148‑28 (MQ=255)
cAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcg < 1:108319‑M2/148‑28 (MQ=255)
aTTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtg > 2:1830764‑M2/1‑119 (MQ=255)
ttttATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgt > 2:1777814‑M2/1‑118 (MQ=255)
tttATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgtt < 2:385471‑M2/148‑32 (MQ=255)
ataACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttata < 1:2425262‑M2/148‑35 (MQ=255)
cAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGTCATTGGTCCAtacttctaagttagtgccgtcatcttgtgttataggag < 2:4706999‑M2/148‑39 (MQ=255)
aTTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaata > 1:1228305‑M2/1‑108 (MQ=255)
ttATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatag > 2:2739731‑M2/1‑107 (MQ=255)
ttATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatag > 1:2758200‑M2/1‑107 (MQ=255)
ataATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagag > 2:172690‑M2/1‑105 (MQ=255)
ataATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagag < 1:4296913‑M2/148‑44 (MQ=255)
taATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagc < 2:1233511‑M2/148‑45 (MQ=255)
tCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccga < 2:3101471‑M2/148‑48 (MQ=255)
cTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAACTTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgaca > 1:4199579‑M2/1‑99 (MQ=255)
cTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgaca < 2:876354‑M2/148‑50 (MQ=255)
aTTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagc < 1:3440788‑M2/140‑45 (MQ=255)
tCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccc < 1:3368750‑M2/148‑55 (MQ=255)
tCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccc > 2:2653007‑M2/1‑94 (MQ=255)
caacaaTGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgccc < 1:908120‑M2/148‑60 (MQ=255)
aacaaTGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccc < 1:3620572‑M2/148‑61 (MQ=255)
aTGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctacc < 1:4652392‑M2/148‑65 (MQ=255)
gTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaat > 2:2832311‑M2/1‑81 (MQ=255)
gTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaat < 2:3310189‑M2/148‑68 (MQ=255)
ttAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataa < 2:2954914‑M2/148‑70 (MQ=255)
aaCTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaa < 2:2103710‑M2/148‑72 (MQ=255)
aaCTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaa > 1:2255302‑M2/1‑77 (MQ=255)
aCTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttatagccgtcatctcgtgttataggaatagatccgacaccccctgcccctaccaataaaag < 1:2896618‑M2/148‑73 (MQ=255)
aCTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaag < 1:3511724‑M2/148‑73 (MQ=255)
aCTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaag > 1:4466904‑M2/1‑76 (MQ=255)
cTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccttaccaataaaagt > 2:2561298‑M2/1‑75 (MQ=255)
aaTTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaag < 2:3400539‑M2/142‑73 (MQ=255)
aTTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagca > 1:2343678‑M2/1‑69 (MQ=255)
tAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatc > 2:3462645‑M2/1‑67 (MQ=255)
agaaagaaGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatca < 1:3135980‑M2/148‑83 (MQ=255)
agaaagaaGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatca < 1:3775873‑M2/148‑83 (MQ=255)
gaaagaaGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcat > 2:609888‑M2/1‑65 (MQ=255)
aaagaaGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcata > 1:3011387‑M2/1‑64 (MQ=255)
aaagaaGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcata > 1:1502417‑M2/1‑64 (MQ=255)
aaagaaGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcata > 1:3421441‑M2/1‑64 (MQ=255)
aagaagAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataa < 1:3286832‑M2/148‑86 (MQ=255)
aagaagAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatcccgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataa < 1:1822007‑M2/148‑86 (MQ=255)
gaagaaAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataagg > 1:4568457‑M2/1‑61 (MQ=255)
aagaaAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggc < 2:928591‑M2/148‑89 (MQ=255)
agaaAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcg < 1:478341‑M2/148‑90 (MQ=255)
aaaTTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttt > 1:3209699‑M2/1‑56 (MQ=255)
aaTTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgtttt > 1:213600‑M2/1‑55 (MQ=255)
attattTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgtttta > 2:4121976‑M2/1‑54 (MQ=255)
ttttAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtcttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcc < 2:2255687‑M2/148‑99 (MQ=255)
tttAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcct < 2:1499809‑M2/148‑100 (MQ=255)
tttAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcct > 1:541969‑M2/1‑49 (MQ=255)
gAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaa > 2:3361358‑M2/1‑44 (MQ=255)
aaaTATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaact > 2:1398829‑M2/1‑42 (MQ=255)
atatAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttc > 1:660039‑M2/1‑40 (MQ=255)
atatAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttc > 1:1553703‑M2/1‑40 (MQ=255)
tataGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttct < 1:2499855‑M2/148‑110 (MQ=255)
aGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttga < 1:6116‑M2/148‑113 (MQ=255)
gCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaa < 1:2967468‑M2/148‑114 (MQ=255)
tCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaa < 1:780269‑M2/148‑126 (MQ=255)
tAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaat < 2:4005928‑M2/148‑128 (MQ=255)
atatTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaattca > 1:1295139‑M2/1‑18 (MQ=255)
tatTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaattcaa > 2:1126013‑M2/1‑17 (MQ=255)
gACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaattcaacatca > 1:2027994‑M2/1‑12 (MQ=255)
aCATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaattcaacatcaga < 2:3672390‑M2/148‑138 (MQ=255)
cATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaattcaacatcaga > 1:2720448‑M2/1‑10 (MQ=255)
aTTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaattcaacatcagac > 2:1981668‑M2/1‑9 (MQ=255)
ttGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctttgaacttcttgcatcactaagccaaattcaacatcagaca > 2:100089‑M2/1‑8 (MQ=255)
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AAGTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCACCTAGGATTAAATTAAAAAAAGGAACACCGATATTTTCAACTTTTTTAAAACCAAATCTGATAACTTTATTGAAATGAACCAAGCCAAAGCCTGTCCTGTAAAAGACATTTGATTCATTCTCTGATAGGCTCGCCTTAAG > CP043523/1883866‑1884158
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
