Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F250 I1 R1
|
466 |
525.0 |
9216842 |
90.5% |
8341242 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP043523 |
1,884,013 |
A→G |
intergenic (+59/‑306) |
FTN78_chr1929 → / → FTN78_chr1930 |
Transposase TnpA/Putative UV‑damage repair protein UvrX |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP043523 | 1,884,013 | 0 | A | G | 83.8%
| 1674.0
/ 226.3
| 687 | intergenic (+59/‑306) | FTN78_chr1929/FTN78_chr1930 | Transposase TnpA/Putative UV‑damage repair protein UvrX |
| Reads supporting (aligned to +/- strand): ref base A (47/64); new base G (240/335); total (288/399) |
| Fisher's exact test for biased strand distribution p-value = 9.17e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 700 total aligned reads displayed.
AGAAGTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCACCTAGGATTAAATTAAAAAAAGGAACACCGATATTTTCAACTTTTTTAAAACCAAATCTGATAACTTTATTGAAATGAACCAAGCCAAAGCCTGTCCTGTAAAAGACATTTGATTCATTCTCTGATAGGCTCGCCTTAAGTA > CP043523/1883864‑1884160
|
agaagTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTa > 1:4385125/1‑150 (MQ=255)
agaagTTCAACTCTCTTGCTTTGAATACATAGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAATTCAGAAAGAAGAAAATTATTTTAAGAAAATATAGTTCATTTTGTGTATAAATATTTGAAATTa > 2:3382142/1‑150 (MQ=255)
gaagTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAg > 2:2129527/1‑150 (MQ=255)
gaagTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCGAAATATTTCACATTAg > 2:299643/1‑150 (MQ=255)
aagTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGt < 2:2019868/150‑1 (MQ=255)
aagTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGt < 2:4307708/150‑1 (MQ=255)
aagTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGt > 2:2460007/1‑150 (MQ=255)
gTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTcc > 1:2175034/1‑150 (MQ=255)
gTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAAGATAGATCATTTTGTGTCTAAATATTTGACATTAGGcc > 1:3308390/1‑150 (MQ=255)
gTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTACGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTcc < 2:3045432/150‑1 (MQ=255)
tCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAt > 1:3381044‑M2/1‑149 (MQ=255)
tCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaa > 1:4114625/1‑149 (MQ=255)
cAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaa < 2:2177144/150‑3 (MQ=255)
cAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTACGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCaga > 2:1969962/1‑148 (MQ=255)
aaCTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaat < 1:263908/150‑4 (MQ=255)
aaCTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTACGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCagaa > 2:4424777/1‑147 (MQ=255)
nctctctTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaata > 1:720358/2‑146 (MQ=255)
aCTCTCTTGCTTTGCATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaata > 1:4283139/1‑146 (MQ=255)
aCTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTACGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCagaaa > 1:640206/1‑146 (MQ=255)
ctctctTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaatat > 1:3759757/1‑145 (MQ=255)
ctctctTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTACGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCagaaac < 2:1923929/150‑6 (MQ=255)
tctctTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaatatt > 2:578944/1‑144 (MQ=255)
tctctTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaatatt < 2:1553109/150‑7 (MQ=255)
tctctTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAACGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaatatt < 2:2827176/150‑7 (MQ=255)
ctctTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaatattg > 2:860321/1‑143 (MQ=255)
ctctTGCTTTGAATACATCGAACAATTTTATAACAATTATAATACTCATTCCGCCAAGAAGGGTTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCaaatattg > 2:3884674/1‑143 (MQ=255)
tctTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttcta > 1:1850599‑M2/1‑142 (MQ=255)
ttGCTTTGAATACATCGAACAATTTTATAACTATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaag < 2:3953367‑M2/150‑11 (MQ=255)
tGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTATAAAGATGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagt < 2:4169289‑M2/150‑12 (MQ=255)
cTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagtta > 2:2364945‑M2/1‑137 (MQ=255)
tttGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttag > 2:2957264‑M2/1‑136 (MQ=255)
aaTACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagcc > 2:541439‑M2/1‑132 (MQ=255)
aTCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcat > 2:2572302‑M2/1‑127 (MQ=255)
tCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAAAAATGGTTTAACTCCAAATTAGAAAGAAGAAACTTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatc < 2:4026339‑M2/150‑25 (MQ=255)
aTTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgtt > 2:2271065‑M2/1‑119 (MQ=255)
tttATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttat > 1:1444619‑M2/1‑117 (MQ=255)
tttATAACAATTATAAGCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttat > 1:2259760‑M2/1‑117 (MQ=255)
aCAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaat < 2:10989‑M2/150‑40 (MQ=255)
aaTTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatag < 2:2034959‑M2/150‑42 (MQ=255)
aaTTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatag < 1:3801202‑M2/150‑42 (MQ=255)
aTTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaataga < 1:3021706‑M2/150‑43 (MQ=255)
tataATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagc > 2:961112‑M2/1‑106 (MQ=255)
taATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccg < 1:4509812‑M2/150‑47 (MQ=255)
aTCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgac > 1:1197832‑M2/1‑102 (MQ=255)
tCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgaca > 1:3684914‑M2/1‑101 (MQ=255)
tCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgaca < 2:4502285‑M2/150‑50 (MQ=255)
cTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacacc < 2:1184169‑M2/150‑52 (MQ=255)
cTCATTCCGCCAACAATGGTTTAAATCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacacc > 1:2740119‑M2/1‑99 (MQ=255)
tCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccc < 2:488617‑M2/150‑53 (MQ=255)
cATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacacccc < 1:3501320‑M2/150‑54 (MQ=255)
ttCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccct > 2:3244469‑M2/1‑95 (MQ=255)
ttCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccct > 2:1879154‑M2/1‑95 (MQ=255)
tCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctg < 2:4273627‑M2/150‑57 (MQ=255)
gCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgccc < 1:2142424‑M2/150‑60 (MQ=255)
caacaaTGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccct > 1:4424196‑M2/1‑89 (MQ=255)
aacaaTGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgccccta < 2:1621358‑M2/150‑63 (MQ=255)
aaTGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctacca < 1:2099676‑M2/150‑66 (MQ=255)
aaTGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctacca < 1:3975941‑M2/150‑66 (MQ=255)
tttAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaa < 2:3605021‑M2/150‑71 (MQ=255)
aCTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagtt < 1:2893269‑M2/150‑75 (MQ=255)
cTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttg < 1:2435085‑M2/150‑76 (MQ=255)
cTCCAAATTAGAAAGAACAAAATTATTTTACGAAAATATAGATCCTTTTGTGTCTAAAGATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggactacacccgacaccccctcctcctaccaataaaagttg < 2:1830810‑M2/150‑76 (MQ=255)
cAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagc < 1:3911715‑M2/150‑79 (MQ=255)
cAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagc < 1:115948‑M2/150‑79 (MQ=255)
aaaTTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagca > 2:1735692‑M2/1‑71 (MQ=255)
aaTTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcat < 1:3241328‑M2/150‑81 (MQ=255)
aTTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatc > 2:1050513‑M2/1‑69 (MQ=255)
gaaagaaGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataa > 2:2786604‑M2/1‑65 (MQ=255)
aaagaaGAAAATTATTTTAAGAAAATATAGCTAATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtggtataggaatagagccgacaccccctgcacctaccaataaaagttgagcatcataag < 2:4360839‑M2/150‑87 (MQ=255)
aagaagAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataagg < 1:310722‑M2/150‑88 (MQ=255)
aaaTTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctacgttagagccgtcatctcgtgttataggaatagagacgataccccctgcccctaccaataaaagttgagcatcataaggcgtttta > 2:1673192‑M2/1‑56 (MQ=255)
attattTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaat < 1:1964405‑M2/150‑97 (MQ=255)
attattTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaat < 1:1512310‑M2/150‑97 (MQ=255)
tattTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcc < 1:3568538‑M2/150‑99 (MQ=255)
ttAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctg > 2:310997‑M2/1‑48 (MQ=255)
aaTATAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttct < 2:2700588‑M2/150‑110 (MQ=255)
atatAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttctt < 1:90902‑M2/150‑111 (MQ=255)
atatAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttctt > 1:3466618‑M2/1‑40 (MQ=255)
atatAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttctt < 1:866395‑M2/150‑111 (MQ=255)
atatAGCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttctt < 1:1654595‑M2/150‑111 (MQ=255)
gCTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatc > 2:691675‑M2/1‑35 (MQ=255)
cTCATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatca > 2:37555‑M2/1‑34 (MQ=255)
cATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcact < 1:1032884‑M2/150‑119 (MQ=255)
cATTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcact < 1:2051741‑M2/150‑119 (MQ=255)
aTTTTGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcacta < 1:511687‑M2/150‑120 (MQ=255)
ttttGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaa < 1:2539786‑M2/150‑121 (MQ=255)
tttGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaag < 1:1825318‑M2/150‑122 (MQ=255)
tttGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaag > 2:2876573‑M2/1‑29 (MQ=255)
ttGTGTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagc < 2:1445591‑M2/150‑123 (MQ=255)
tgtgTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagcc > 2:3498935‑M2/1‑27 (MQ=255)
tgtgTCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagcc < 2:2062343‑M2/150‑124 (MQ=255)
tCTAAATATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaat < 1:1365408‑M2/150‑128 (MQ=255)
aaaTATTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaattca > 2:1341048‑M2/1‑20 (MQ=255)
atatTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaattcaac < 1:2352929‑M2/150‑133 (MQ=255)
atatTTGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaattcaac > 1:3141166‑M2/1‑18 (MQ=255)
tGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaattcaacatcag > 2:4065210‑M2/1‑13 (MQ=255)
tGACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaattcaacatcag < 1:4065210‑M2/150‑138 (MQ=255)
gACATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaattcaacatcaga > 1:10989‑M2/1‑12 (MQ=255)
cATTGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaattcaacatcagacc < 2:3330637‑M2/150‑141 (MQ=255)
ttGGTCCAtacttctaagttagagccgtcatctcgtgttataggaatagagccgacaccccctgcccctaccaataaaagttgagcatcataaggcgttttaatcctctgaacttcttgaatcactaagccaaattcaacatcagacaaa < 1:1317274‑M2/150‑143 (MQ=255)
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AGAAGTTCAACTCTCTTGCTTTGAATACATCGAACAATTTTATAACAATTATAATCCTCATTCCGCCAACAATGGTTTAACTCCAAATTAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCACCTAGGATTAAATTAAAAAAAGGAACACCGATATTTTCAACTTTTTTAAAACCAAATCTGATAACTTTATTGAAATGAACCAAGCCAAAGCCTGTCCTGTAAAAGACATTTGATTCATTCTCTGATAGGCTCGCCTTAAGTA > CP043523/1883864‑1884160
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
