mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 4,892 | C→A | R546S (CGT→AGT) | FTN78_chr0004 → | Phenylalanyl‑tRNA synthetase beta chain |
| RA | 88,575 | T→A | V957E (GTA→GAA) | FTN78_chr0110 → | Phage capsid and scaffold |
| RA | 533,440 | C→T | P125P (CCC→CCT) | FTN78_chr0575 → | Permease of the drug/metabolite transporter (DMT) superfamily |
| RA | 1,055,094 | (T)9→8 | pseudogene (2758/2771 nt) | FTN78_chr1091 ← | Endo‑beta‑N‑acetylglucosaminidase |
| RA | 1,847,782 | A→G | intergenic (‑236/‑33) | FTN78_chr1896 ← / → FTN78_chr1897 | Mobile element protein/Cold shock protein of CSP family |
| RA | 1,847,814 | T→C | intergenic (‑268/‑1) | FTN78_chr1896 ← / → FTN78_chr1897 | Mobile element protein/Cold shock protein of CSP family |
| RA | 1,847,985 | T→A | G57G (GGT→GGA) | FTN78_chr1897 → | Cold shock protein of CSP family |
| RA | 1,848,140 | T→C | intergenic (+125/‑152) | FTN78_chr1897 → / → FTN78_chr1898 | Cold shock protein of CSP family/Cold shock protein of CSP family |
| RA | 1,848,162 | 1 bp→CA | intergenic (+147/‑130) | FTN78_chr1897 → / → FTN78_chr1898 | Cold shock protein of CSP family/Cold shock protein of CSP family |
| RA | 1,848,182 | C→G | intergenic (+167/‑110) | FTN78_chr1897 → / → FTN78_chr1898 | Cold shock protein of CSP family/Cold shock protein of CSP family |
| RA | 1,848,201 | G→A | intergenic (+186/‑91) | FTN78_chr1897 → / → FTN78_chr1898 | Cold shock protein of CSP family/Cold shock protein of CSP family |
| RA | 1,848,210 | A→G | intergenic (+195/‑82) | FTN78_chr1897 → / → FTN78_chr1898 | Cold shock protein of CSP family/Cold shock protein of CSP family |
| RA | 1,848,257 | G→A | intergenic (+242/‑35) | FTN78_chr1897 → / → FTN78_chr1898 | Cold shock protein of CSP family/Cold shock protein of CSP family |
| RA | 1,848,290 | +AT | intergenic (+275/‑2) | FTN78_chr1897 → / → FTN78_chr1898 | Cold shock protein of CSP family/Cold shock protein of CSP family |
| RA | 1,848,324 | 3 bp→TAC | coding (33‑35/201 nt) | FTN78_chr1898 → | Cold shock protein of CSP family |
| RA | 1,848,339 | C→T | G16G (GGC→GGT) | FTN78_chr1898 → | Cold shock protein of CSP family |
| RA | 1,848,345 | C→T | I18I (ATC→ATT) | FTN78_chr1898 → | Cold shock protein of CSP family |
| RA | 1,848,348 | T→C | T19T (ACT→ACC) | FTN78_chr1898 → | Cold shock protein of CSP family |
| RA | 1,848,351 | A→T | S20S (TCA→TCT) | FTN78_chr1898 → | Cold shock protein of CSP family |
| RA | 1,848,357 | A→T | E22D (GAA→GAT) | FTN78_chr1898 → | Cold shock protein of CSP family |
| RA | 1,848,360 | 2 bp→TC | coding (69‑70/201 nt) | FTN78_chr1898 → | Cold shock protein of CSP family |
| RA | 1,848,385 | G→T | A32S (GCA→TCA) | FTN78_chr1898 → | Cold shock protein of CSP family |
| RA | 1,848,409 | A→T | T40S (ACA→TCA) | FTN78_chr1898 → | Cold shock protein of CSP family |
| RA | 1,848,417 | T→C | D42D (GAT→GAC) | FTN78_chr1898 → | Cold shock protein of CSP family |
| RA | 1,848,516 | G→A | intergenic (+24/+720) | FTN78_chr1898 → / ← FTN78_chr1899 | Cold shock protein of CSP family/Type I restriction‑modification system, restriction subunit R |
| RA | 1,848,557 | G→T | intergenic (+65/+679) | FTN78_chr1898 → / ← FTN78_chr1899 | Cold shock protein of CSP family/Type I restriction‑modification system, restriction subunit R |
| RA | 1,848,821 | T→G | intergenic (+329/+415) | FTN78_chr1898 → / ← FTN78_chr1899 | Cold shock protein of CSP family/Type I restriction‑modification system, restriction subunit R |
| RA | 1,848,837 | T→C | intergenic (+345/+399) | FTN78_chr1898 → / ← FTN78_chr1899 | Cold shock protein of CSP family/Type I restriction‑modification system, restriction subunit R |
| RA | 1,848,844 | T→C | intergenic (+352/+392) | FTN78_chr1898 → / ← FTN78_chr1899 | Cold shock protein of CSP family/Type I restriction‑modification system, restriction subunit R |
| RA | 1,848,856 | A→T | intergenic (+364/+380) | FTN78_chr1898 → / ← FTN78_chr1899 | Cold shock protein of CSP family/Type I restriction‑modification system, restriction subunit R |
| RA | 1,860,921 | T→C | D25D (GAT→GAC) | FTN78_chr1908 → | neutral endopeptidase |
| RA | 1,861,176 | A→G | A110A (GCA→GCG) | FTN78_chr1908 → | neutral endopeptidase |
| RA | 1,861,196 | A→G | H117R (CAC→CGC) | FTN78_chr1908 → | neutral endopeptidase |
| RA | 1,861,200 | G→T | P118P (CCG→CCT) | FTN78_chr1908 → | neutral endopeptidase |
| RA | 1,861,227 | G→T | P225T (CCA→ACA) | FTN78_chr1909 ← | Mobile element protein |
| RA | 1,861,909 | G→C | intergenic (‑10/+22) | FTN78_chr1909 ← / ← FTN78_chr1910 | Mobile element protein/hypothetical protein |
| RA | 1,867,563 | G→A | Q13Q (CAG→CAA) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,626 | A→G | K34K (AAA→AAG) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,632 | G→T | T36T (ACG→ACT) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,635 | G→A | G37G (GGG→GGA) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,644 | T→C | V40V (GTT→GTC) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,663 | T→C | L47L (TTA→CTA) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,668 | 2 bp→AT | coding (144‑145/585 nt) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,671 | C→T | L49F (CTC→TTT) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,682 | 3 bp→AGG | coding (158‑160/585 nt) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,689 | C→T | G55G (GGC→GGT) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,692 | T→C | D56D (GAT→GAC) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,716 | T→C | D64D (GAT→GAC) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,736 | A→G | K71R (AAA→AGA) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,786 | T→C | Y88H (TAT→CAT) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,803 | A→T | G93G (GGA→GGT) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,809 | C→T | I95I (ATC→ATT) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,821 | G→T | P99P (CCG→CCT) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,824 | A→T | T100T (ACA→ACT) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,830 | A→G | Q102Q (CAA→CAG) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,833 | T→G | L103L (CTT→CTG) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,908 | C→T | N128N (AAC→AAT) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,917 | 2 bp→GC | coding (393‑394/585 nt) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,920 | C→T | I132L (ATC→CTT) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,929 | G→A | P135P (CCG→CCA) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,931 | 2 bp→GT | coding (407‑408/585 nt) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,938 | A→G | K138K (AAA→AAG) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,944 | A→G | G140G (GGA→GGG) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,953 | G→A | Q143Q (CAG→CAA) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,962 | T→C | T146T (ACT→ACC) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,989 | A→G | E155E (GAA→GAG) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,867,995 | G→A | K157K (AAG→AAA) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,868,004 | T→A | G160G (GGT→GGA) | FTN78_chr1914 → | Site‑specific recombinase, DNA invertase Pin related protein |
| RA | 1,882,480 | T→A | intergenic (+191/‑364) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,498 | A→T | intergenic (+209/‑346) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,552 | T→A | intergenic (+263/‑292) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,555 | T→G | intergenic (+266/‑289) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,558 | A→G | intergenic (+269/‑286) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,561 | G→A | intergenic (+272/‑283) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,564 | A→G | intergenic (+275/‑280) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,567 | G→A | intergenic (+278/‑277) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,570 | T→C | intergenic (+281/‑274) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,603 | 2 bp→AC | intergenic (+314/‑240) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,606 | A→G | intergenic (+317/‑238) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,618 | T→C | intergenic (+329/‑226) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,627 | G→T | intergenic (+338/‑217) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,633 | G→A | intergenic (+344/‑211) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,642 | C→G | intergenic (+353/‑202) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,645 | A→C | intergenic (+356/‑199) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,669 | A→T | intergenic (+380/‑175) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,674 | C→G | intergenic (+385/‑170) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,676 | A→C | intergenic (+387/‑168) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,684 | C→T | intergenic (+395/‑160) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,705 | T→C | intergenic (+416/‑139) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,882,714 | C→A | intergenic (+425/‑130) | FTN78_chr1926 → / → FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,883,049 | A→G | N69S (AAT→AGT) | FTN78_chr1927 → | 3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| RA | 1,883,134 | +A | intergenic (+15/‑146) | FTN78_chr1927 → / → FTN78_chr1928 | 3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase/Transposase TnpA |
| RA | 1,883,162 | C→T | intergenic (+43/‑118) | FTN78_chr1927 → / → FTN78_chr1928 | 3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase/Transposase TnpA |
| RA | 1,883,197 | T→C | intergenic (+78/‑83) | FTN78_chr1927 → / → FTN78_chr1928 | 3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase/Transposase TnpA |
| RA | 1,883,199 | A→T | intergenic (+80/‑81) | FTN78_chr1927 → / → FTN78_chr1928 | 3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase/Transposase TnpA |
| RA | 1,883,203 | A→G | intergenic (+84/‑77) | FTN78_chr1927 → / → FTN78_chr1928 | 3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase/Transposase TnpA |
| RA | 1,883,210 | T→C | intergenic (+91/‑70) | FTN78_chr1927 → / → FTN78_chr1928 | 3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase/Transposase TnpA |
| RA | 1,883,241 | A→G | intergenic (+122/‑39) | FTN78_chr1927 → / → FTN78_chr1928 | 3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase/Transposase TnpA |
| RA | 1,883,256 | T→A | intergenic (+137/‑24) | FTN78_chr1927 → / → FTN78_chr1928 | 3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase/Transposase TnpA |
| RA | 1,883,262 | 3 bp→TTA | intergenic (+143/‑16) | FTN78_chr1927 → / → FTN78_chr1928 | 3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase/Transposase TnpA |
| RA | 1,883,288 | C→T | A3A (GCC→GCT) | FTN78_chr1928 → | Transposase TnpA |
| RA | 1,883,361 | T→C | C28R (TGT→CGT) | FTN78_chr1928 → | Transposase TnpA |
| RA | 1,883,411 | A→C | I44I (ATA→ATC) | FTN78_chr1928 → | Transposase TnpA |
| RA | 1,883,418 | C→T | R47C (CGT→TGT) | FTN78_chr1928 → | Transposase TnpA |
| RA | 1,883,597 | A→G | *106W (TGA→TGG) | FTN78_chr1928 → | Transposase TnpA |
| RA | 1,883,610 | A→C | intergenic (+13/‑141) | FTN78_chr1928 → / → FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| RA | 1,883,612 | G→A | intergenic (+15/‑139) | FTN78_chr1928 → / → FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| RA | 1,883,633 | T→C | intergenic (+36/‑118) | FTN78_chr1928 → / → FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| RA | 1,883,636 | T→C | intergenic (+39/‑115) | FTN78_chr1928 → / → FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| RA | 1,883,656 | C→A | intergenic (+59/‑95) | FTN78_chr1928 → / → FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| RA | 1,883,666 | G→T | intergenic (+69/‑85) | FTN78_chr1928 → / → FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| RA | 1,883,783 | C→T | P11P (CCC→CCT) | FTN78_chr1929 → | Transposase TnpA |
| RA | 1,883,804 | T→G | D18E (GAT→GAG) | FTN78_chr1929 → | Transposase TnpA |
| RA | 1,884,013 | A→G | intergenic (+59/‑306) | FTN78_chr1929 → / → FTN78_chr1930 | Transposase TnpA/Putative UV‑damage repair protein UvrX |
| RA | 1,884,340 | C→A | Q8K (CAA→AAA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,354 | T→C | Y12Y (TAT→TAC) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,357 | C→G | S13S (TCC→TCG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,363 | G→A | E15E (GAG→GAA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,577 | T→A | S87T (TCA→ACA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,666 | C→T | F116F (TTC→TTT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,672 | A→G | E118E (GAA→GAG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,705 | A→T | P129P (CCA→CCT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,735 | 2 bp→TA | coding (417‑418/1467 nt) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,741 | T→G | V141V (GTT→GTG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,744 | G→A | T142T (ACG→ACA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,750 | T→A | I144I (ATT→ATA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,753 | A→G | L145L (CTA→CTG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,765 | A→G | T149T (ACA→ACG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,777 | A→G | E153E (GAA→GAG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,783 | T→C | H155H (CAT→CAC) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,786 | T→C | S156S (TCT→TCC) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,801 | G→A | E161E (GAG→GAA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,804 | G→T | S162S (TCG→TCT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,808 | C→T | L164M (CTT→TTG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,810 | T→G | L164M (CTT→TTG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,813 | 2 bp→TA | coding (495‑496/1467 nt) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,816 | A→C | V166I (GTA→ATC) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,826 | C→T | L170M (CTC→TTG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,828 | C→G | L170M (CTC→TTG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,831 | T→C | N171N (AAT→AAC) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,837 | T→C | F173F (TTT→TTC) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,840 | T→C | Y174Y (TAT→TAC) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,858 | T→A | R180R (CGT→CGA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,867 | A→G | Q183Q (CAA→CAG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,915 | C→A | L199L (CTC→CTA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,933 | G→T | V205V (GTG→GTT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,936 | C→G | G206G (GGC→GGG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,884,948 | T→C | N210N (AAT→AAC) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,008 | 2 bp→CC | coding (690‑691/1467 nt) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,034 | G→A | S239N (AGT→AAT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,047 | G→A | T243T (ACG→ACA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,050 | C→T | I244I (ATC→ATT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,062 | G→A | T248T (ACG→ACA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,065 | C→T | D249D (GAC→GAT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,077 | C→T | I253I (ATC→ATT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,083 | A→G | K255K (AAA→AAG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,149 | 2 bp→AC | coding (831‑832/1467 nt) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,153 | T→C | L279L (TTG→CTC) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,155 | G→C | L279L (TTG→CTC) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,158 | G→T | L280L (CTG→CTT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,161 | G→A | K281K (AAG→AAA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,170 | A→G | L284L (TTA→TTG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,175 | T→C | I286T (ATA→ACA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,188 | A→G | Q290Q (CAA→CAG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,200 | T→C | H294H (CAT→CAC) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,203 | T→A | A295A (GCT→GCA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,212 | C→T | I298I (ATC→ATT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,215 | T→C | D299D (GAT→GAC) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,221 | C→T | S301S (AGC→AGT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,308 | C→T | I330I (ATC→ATT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,398 | A→T | G360G (GGA→GGT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,422 | A→T | S368S (TCA→TCT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,426 | A→G | I370V (ATT→GTT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,446 | C→T | I376I (ATC→ATT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,452 | A→C | A378A (GCA→GCC) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,470 | A→G | E384E (GAA→GAG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,524 | T→A | I402I (ATT→ATA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,545 | G→A | G409G (GGG→GGA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,578 | G→C | L420L (CTG→CTC) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,662 | A→T | T448T (ACA→ACT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,674 | A→T | L452L (CTA→CTT) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,677 | T→A | S453S (TCT→TCA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,686 | A→G | K456K (AAA→AAG) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,706 | 2 bp→AT | coding (1388‑1389/1467 nt) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,769 | A→T | E484V (GAA→GTA) | FTN78_chr1930 → | Putative UV‑damage repair protein UvrX |
| RA | 1,885,795 | T→C | Y7Y (TAT→TAC) | FTN78_chr1931 → | hypothetical protein |
| RA | 1,885,798 | T→C | S8S (AGT→AGC) | FTN78_chr1931 → | hypothetical protein |
| RA | 1,885,804 | C→T | Y10Y (TAC→TAT) | FTN78_chr1931 → | hypothetical protein |
| RA | 1,885,807 | G→A | E11E (GAG→GAA) | FTN78_chr1931 → | hypothetical protein |
| RA | 1,885,810 | T→C | V12V (GTT→GTC) | FTN78_chr1931 → | hypothetical protein |
| RA | 1,885,813 | 2 bp→CC | coding (39‑40/351 nt) | FTN78_chr1931 → | hypothetical protein |
| RA | 1,885,834 | A→G | G20G (GGA→GGG) | FTN78_chr1931 → | hypothetical protein |
| RA | 1,885,849 | G→C | G25G (GGG→GGC) | FTN78_chr1931 → | hypothetical protein |
| RA | 1,885,864 | G→A | G30G (GGG→GGA) | FTN78_chr1931 → | hypothetical protein |
| RA | 1,885,868 | T→C | L32L (TTA→CTC) | FTN78_chr1931 → | hypothetical protein |
| RA | 1,885,870 | A→C | L32L (TTA→CTC) | FTN78_chr1931 → | hypothetical protein |
| RA | 1,885,873 | T→G | T33T (ACT→ACG) | FTN78_chr1931 → | hypothetical protein |
| RA | 1,885,876 | A→G | E34E (GAA→GAG) | FTN78_chr1931 → | hypothetical protein |
| RA | 1,885,879 | C→T | A35A (GCC→GCT) | FTN78_chr1931 → | hypothetical protein |
| RA | 1,891,084 | A→G | Y49Y (TAT→TAC) | FTN78_chr1940 ← | Mobile element protein |
| RA | 1,891,241 | C→A | intergenic (‑11/‑139) | FTN78_chr1940 ← / → FTN78_chr1941 | Mobile element protein/Permease of the drug/metabolite transporter (DMT) superfamily |
| RA | 1,891,260 | 2 bp→CT | intergenic (‑30/‑119) | FTN78_chr1940 ← / → FTN78_chr1941 | Mobile element protein/Permease of the drug/metabolite transporter (DMT) superfamily |
| RA | 1,895,400 | A→C | S174R (AGT→CGT) | FTN78_chr1944 → | Mobile element protein |
| RA | 1,895,466 | T→C | L196L (TTA→CTA) | FTN78_chr1944 → | Mobile element protein |
| RA | 2,013,099 | G→T | A410S (GCT→TCT) | FTN78_chr2083 → | DNA primase |
| RA | 2,025,377 | C→G | intergenic (‑101/+105) | FTN78_chr2100 ← / ← FTN78_chr2101 | Cell division protein FtsH/Hypoxanthine‑guanine phosphoribosyltransferase |
| RA | 2,043,810 | C→A | D311Y (GAC→TAC) | FTN78_chr2119 ← | ATP‑dependent helicase/nuclease AddAB, subunit A |
| RA | 2,065,547 | G→A | G206S (GGC→AGC) | FTN78_chr2137 → | Pur operon repressor PurR |
| RA | 2,214,930 | G→A | intergenic (+45/+35) | FTN78_chr2287 → / ← FTN78_chr2288 | Mobile element protein/Transcriptional regulator |
| RA | 2,310,414 | T→G | F68L (TTT→TTG) | FTN78_chr2391 → | UDP‑N‑acetylmuramate‑‑L‑alanine ligase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP043523 | 1823878 | 1847681 | 23804 | 539 [1] | [330] 336 | FTN78_chr1866–FTN78_chr1896 | FTN78_chr1866,FTN78_chr1867,FTN78_chr1868,FTN78_chr1869,FTN78_chr1870,FTN78_chr1871,FTN78_chr1872,FTN78_chr1873,FTN78_chr1874,FTN78_chr1875,FTN78_chr1876,FTN78_chr1877,FTN78_chr1878,FTN78_chr1879,FTN78_chr1880,FTN78_chr1881,FTN78_chr1882,FTN78_chr1883,FTN78_chr1884,FTN78_chr1885,FTN78_chr1886,FTN78_chr1887,FTN78_chr1888,FTN78_chr1889,FTN78_chr1890,FTN78_chr1891,FTN78_chr1892,FTN78_chr1893,FTN78_chr1894,FTN78_chr1895,FTN78_chr1896 |
| * | * | ÷ | CP043523 | 1848608 | 1848804 | 197 | 334 [328] | [329] 333 | FTN78_chr1898/FTN78_chr1899 | Cold shock protein of CSP family/Type I restriction‑modification system, restriction subunit R |
| * | * | ÷ | CP043523 | 1848913 | 1860766 | 11854 | 337 [329] | [0] 479 | FTN78_chr1899–FTN78_chr1907 | FTN78_chr1899,FTN78_chr1900,FTN78_chr1901,FTN78_chr1902,FTN78_chr1903,FTN78_chr1904,FTN78_chr1905,FTN78_chr1906,FTN78_chr1907 |
| * | * | ÷ | CP043523 | 1862226–1862274 | 1866283 | 4010–4058 | 342 [316] | [0] 424 | FTN78_chr1911–FTN78_chr1912 | FTN78_chr1911,FTN78_chr1912 |
| * | * | ÷ | CP043523 | 1866299 | 1867495 | 1197 | 333 [329] | [0] 519 | FTN78_chr1913 | FTN78_chr1913 |
| * | * | ÷ | CP043523 | 1868028 | 1882474–1882423 | 14396–14447 | 336 [330] | [328] 332 | [FTN78_chr1914]–FTN78_chr1926 | [FTN78_chr1914],FTN78_chr1915,FTN78_chr1916,FTN78_chr1917,FTN78_chr1918,FTN78_chr1919,FTN78_chr1920,FTN78_chr1921,FTN78_chr1922,FTN78_chr1923,FTN78_chr1924,FTN78_chr1925,FTN78_chr1926 |
| * | * | ÷ | CP043523 | 1882722 | 1882843 | 122 | 336 [329] | [330] 335 | FTN78_chr1926/FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase |
| * | * | ÷ | CP043523 | 1884019 | 1884319 | 301 | 650 [26] | [328] 332 | [FTN78_chr1930] | [FTN78_chr1930] |
| * | * | ÷ | CP043523 | 1885890 | 1890471–1890320 | 4431–4582 | 336 [328] | [326] 341 | [FTN78_chr1931]–[FTN78_chr1940] | [FTN78_chr1931],FTN78_chr1932,FTN78_chr1933,FTN78_chr1934,FTN78_chr1935,FTN78_chr1936,FTN78_chr1937,FTN78_chr1938,FTN78_chr1939,[FTN78_chr1940] |
| * | * | ÷ | CP043523 | 1891287–1891325 | 1894874–1894791 | 3467–3588 | 332 [327] | [304] 333 | FTN78_chr1941–FTN78_chr1943 | FTN78_chr1941,FTN78_chr1942,FTN78_chr1943 |
| * | * | ÷ | CP043523 | 1895651–1895789 | 1897160 | 1372–1510 | 347 [330] | [1] 538 | [FTN78_chr1944]–FTN78_chr1945 | [FTN78_chr1944],FTN78_chr1945 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP043523 | 234703 = | NA (NA) | 476 (1.000) +CGGAGGTCTTTTCT |
200/270 | 0.2 | 48.9% | intergenic (+77/+42) | FTN78_chr0290/FTN78_chr0291 | Transcription elongation factor GreA/Mobile element protein |
| ? | CP043523 | = 1998587 | 550 (1.050) | intergenic (‑79/‑166) | FTN78_chr2059/FTN78_chr2060 | Mobile element protein/Sulfate permease | |||||
| * | ? | CP043523 | 248261 = | 2695 (5.150) | 612 (1.180) +C |
244/296 | 0.0 | 31.2% | coding (164/576 nt) | FTN78_chr0306 | Mobile element protein |
| ? | CP043523 | = 1861974 | 20 (0.040) | coding (206/249 nt) | FTN78_chr1910 | hypothetical protein | |||||
| * | ? | CP043523 | = 249263 | 512 (0.980) | 565 (1.080) | 222/298 | 0.2 | 68.8% | coding (300/2988 nt) | FTN78_chr0307 | Type I restriction‑modification system, restriction subunit R |
| ? | CP043523 | = 1884018 | 1 (0.000) | intergenic (+64/‑301) | FTN78_chr1929/FTN78_chr1930 | Transposase TnpA/Putative UV‑damage repair protein UvrX | |||||
| * | ? | CP043523 | = 849146 | NA (NA) | 506 (0.970) | 195/298 | 1.2 | 50.8% | coding (622/624 nt) | FTN78_chr0901 | hypothetical protein |
| ? | CP043523 | 2058604 = | 489 (0.930) | intergenic (+38/‑88) | FTN78_chr2131/FTN78_chr2132 | SAM‑dependent methyltransferase, MraW methylase family/Putative sugar uptake protein | |||||
| * | ? | CP043523 | 1281853 = | NA (NA) | 622 (1.190) | 236/298 | 0.0 | 55.3% | coding (254/840 nt) | FTN78_chr1303 | Mobile element protein |
| ? | CP043523 | 1317022 = | 503 (0.960) | coding (113/684 nt) | FTN78_chr1339 | O‑methyltransferase family protein | |||||
| * | ? | CP043523 | 1439166 = | 434 (0.830) | 476 (0.930) | 195/292 | 1.0 | 69.1% | intergenic (‑159/+44) | FTN78_chr1453/FTN78_chr1454 | tyrosine phosphatase/Oligopeptide ABC transporter, periplasmic oligopeptide‑binding protein OppA |
| ? | CP043523 | 1860767 = | 0 (0.000) | intergenic (‑214/‑80) | FTN78_chr1907/FTN78_chr1908 | hypothetical protein/neutral endopeptidase | |||||
| * | ? | CP043523 | = 1441041 | 542 (1.060) | 464 (0.910) +CTTG |
175/284 | 2.0 | 46.1% | intergenic (‑29/+76) | FTN78_chr1454/FTN78_chr1455 | Oligopeptide ABC transporter, periplasmic oligopeptide‑binding protein OppA/Oligopeptide transport system permease protein OppC |
| ? | CP043523 | 1441042 = | 563 (1.080) | intergenic (‑30/+75) | FTN78_chr1454/FTN78_chr1455 | Oligopeptide ABC transporter, periplasmic oligopeptide‑binding protein OppA/Oligopeptide transport system permease protein OppC | |||||
| * | ? | CP043523 | 1573335 = | 504 (0.960) | 548 (1.080) | 234/288 | 0.0 | 52.8% | coding (59/861 nt) | FTN78_chr1606 | DNA polymerase III delta prime subunit |
| ? | CP043523 | = 1607375 | 494 (0.980) | coding (1039/1434 nt) | FTN78_chr1639 | Lysine‑specific permease | |||||
| * | ? | CP043523 | = 1596218 | 780 (1.490) | 508 (0.980) +A |
203/296 | 0.7 | 39.6% | intergenic (‑60/‑95) | FTN78_chr1627/FTN78_chr1628 | Exfoliative toxin A/LysR family transcriptional regulator YeiE |
| ? | CP043523 | 1890321 = | NA (NA) | coding (316/330 nt) | FTN78_chr1939 | hypothetical protein | |||||
| * | ? | CP043523 | = 1704678 | 554 (1.060) | 602 (1.150) | 239/298 | 0.0 | 51.6% | intergenic (+30/+79) | FTN78_chr1737/FTN78_chr1738 | hypothetical protein/Ribonucleotide reductase of class III (anaerobic), activating protein |
| ? | CP043523 | 1704695 = | 573 (1.090) | intergenic (+47/+62) | FTN78_chr1737/FTN78_chr1738 | hypothetical protein/Ribonucleotide reductase of class III (anaerobic), activating protein | |||||
| * | ? | CP043523 | = 1705368 | 536 (1.020) | 481 (0.990) | 215/276 | 0.1 | 49.2% | intergenic (‑12/+2) | FTN78_chr1738/FTN78_chr1739 | Ribonucleotide reductase of class III (anaerobic), activating protein/Ribonucleotide reductase of class III (anaerobic), large subunit |
| ? | CP043523 | 1705380 = | 498 (1.030) | coding (2234/2244 nt) | FTN78_chr1739 | Ribonucleotide reductase of class III (anaerobic), large subunit | |||||
| * | ? | CP043523 | 1706850 = | 636 (1.210) | 611 (1.170) | 235/298 | 0.0 | 49.0% | coding (764/2244 nt) | FTN78_chr1739 | Ribonucleotide reductase of class III (anaerobic), large subunit |
| ? | CP043523 | = 1771382 | NA (NA) | coding (809/825 nt) | FTN78_chr1808 | hypothetical protein | |||||
| * | ? | CP043523 | = 1706862 | 637 (1.220) | 686 (1.310) | 239/298 | 0.0 | 51.8% | coding (752/2244 nt) | FTN78_chr1739 | Ribonucleotide reductase of class III (anaerobic), large subunit |
| ? | CP043523 | 1770316 = | NA (NA) | coding (18/198 nt) | FTN78_chr1806 | glycosyltransferase | |||||
| * | ? | CP043523 | 1770316 = | NA (NA) | 555 (1.060) | 230/298 | 0.1 | 92.8% | coding (18/198 nt) | FTN78_chr1806 | glycosyltransferase |
| ? | CP043523 | = 1815121 | 43 (0.080) | intergenic (‑49/+104) | FTN78_chr1855/FTN78_chr1856 | GTP‑sensing transcriptional pleiotropic repressor codY/Alanine transaminase | |||||
| * | ? | CP043523 | = 1771382 | NA (NA) | 454 (0.870) | 214/298 | 0.4 | 88.7% | coding (809/825 nt) | FTN78_chr1808 | hypothetical protein |
| ? | CP043523 | 1815109 = | 58 (0.110) | intergenic (‑37/+116) | FTN78_chr1855/FTN78_chr1856 | GTP‑sensing transcriptional pleiotropic repressor codY/Alanine transaminase | |||||
| * | ? | CP043523 | = 1823877 | 1 (0.000) | 467 (1.080) | 195/246 | 0.0 | 99.9% | intergenic (+12/+1047) | FTN78_chr1865/FTN78_chr1866 | tRNA‑Thr/hypothetical protein |
| ? | CP043523 | 1897161 = | 0 (0.000) | intergenic (‑295/+481) | FTN78_chr1945/FTN78_chr1946 | hypothetical protein/Collagen adhesion protein | |||||
| * | ? | CP043523 | = 1861875 | 2880 (5.990) | 721 (1.490) +TTGTTTGCCTT |
156/252 | 1.9 | 33.2% | coding (25/681 nt) | FTN78_chr1909 | Mobile element protein |
| ? | CP043523 | 1866284 = | 0 (0.000) | intergenic (‑227/+105) | FTN78_chr1912/FTN78_chr1913 | Mobile element protein/hypothetical protein | |||||
| * | ? | CP043523 | 1867496 = | 0 (0.000) | 497 (0.980) +GTGA |
210/290 | 0.3 | 69.3% | intergenic (‑292/‑29) | FTN78_chr1913/FTN78_chr1914 | hypothetical protein/Site‑specific recombinase, DNA invertase Pin related protein |
| ? | CP043523 | 1958190 = | 452 (0.860) | intergenic (‑52/‑59) | FTN78_chr2011/FTN78_chr2012 | hypothetical protein/Mobile element protein | |||||
| * | ? | CP043523 | = 1883769 | 628 (1.200) | 465 (0.930) | 199/286 | 0.6 | 27.2% | coding (19/204 nt) | FTN78_chr1929 | Transposase TnpA |
| ? | CP043523 | 1883860 = | 1886 (3.750) | coding (110/204 nt) | FTN78_chr1929 | Transposase TnpA | |||||
| * | ? | CP043523 | = 1895196 | 18 (0.040) | 473 (0.960) +TGAGTGAG |
165/270 | 2.1 | 96.4% | coding (316/891 nt) | FTN78_chr1944 | Mobile element protein |
| ? | CP043523 | 1895197 = | NA (NA) | coding (317/891 nt) | FTN78_chr1944 | Mobile element protein | |||||
| * | ? | CP043523 | = 1895788 | NA (NA) | 604 (1.160) | 235/296 | 0.0 | 53.6% | intergenic (+17/+38) | FTN78_chr1944/FTN78_chr1945 | Mobile element protein/hypothetical protein |
| ? | CP043523 | = 2060261 | 526 (1.000) | coding (700/1308 nt) | FTN78_chr2133 | D‑alanyl‑D‑alanine carboxypeptidase | |||||