mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 547 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP043523 | 1,894,994 | 0 | C | T | 72.2% | 1960.6 / inf | 2567 | L38L (CTC→CTT) | FTN78_chr1944 | Mobile element protein |
| * | CP043523 | 1,895,003 | 0 | A | T | 71.5% | 1950.0 / inf | 2639 | S41S (TCA→TCT) | FTN78_chr1944 | Mobile element protein |
| * | CP043523 | 1,883,826 | 0 | C | A | 71.2% | 2146.0 / inf | 1401 | Q26K (CAA→AAA) | FTN78_chr1929 | Transposase TnpA |
| * | CP043523 | 1,895,006 | 0 | T | C | 71.2% | 1955.0 / inf | 2649 | D42D (GAT→GAC) | FTN78_chr1944 | Mobile element protein |
| * | CP043523 | 1,895,009 | 0 | C | T | 71.0% | 1890.3 / inf | 2657 | C43C (TGC→TGT) | FTN78_chr1944 | Mobile element protein |
| * | CP043523 | 1,861,166 | 0 | G | T | 66.7% | 141.4 / 137.0 | 132 | G107V (GGT→GTT) | FTN78_chr1908 | neutral endopeptidase |
| * | CP043523 | 248,615 | 0 | T | C | 64.2% | 1468.7 / inf | 1301 | intergenic (‑191/‑349) | FTN78_chr0306/FTN78_chr0307 | Mobile element protein/Type I restriction‑modification system, restriction subunit R |
| * | CP043523 | 1,891,184 | 0 | G | A | 63.2% | 132.4 / inf | 511 | T16I (ACA→ATA) | FTN78_chr1940 | Mobile element protein |
| * | CP043523 | 2,059,908 | 0 | G | A | 61.9% | 647.0 / inf | 954 | Y351Y (TAC→TAT) | FTN78_chr2133 | D‑alanyl‑D‑alanine carboxypeptidase |
| * | CP043523 | 2,059,856 | 0 | C | T | 61.7% | 676.7 / inf | 938 | E369K (GAA→AAA) | FTN78_chr2133 | D‑alanyl‑D‑alanine carboxypeptidase |
| * | CP043523 | 2,059,803 | 0 | A | T | 61.7% | 889.2 / inf | 942 | T386T (ACT→ACA) | FTN78_chr2133 | D‑alanyl‑D‑alanine carboxypeptidase |
| * | CP043523 | 2,059,842 | 0 | G | T | 61.1% | 674.4 / inf | 946 | S373S (TCC→TCA) | FTN78_chr2133 | D‑alanyl‑D‑alanine carboxypeptidase |
| * | CP043523 | 1,895,066 | 0 | T | A | 59.8% | 958.3 / inf | 1802 | A62A (GCT→GCA) | FTN78_chr1944 | Mobile element protein |
| * | CP043523 | 2,059,972 | 0 | A | G | 58.5% | 640.3 / inf | 965 | I330T (ATT→ACT) | FTN78_chr2133 | D‑alanyl‑D‑alanine carboxypeptidase |
| * | CP043523 | 839,380 | 0 | T | C | 58.4% | 639.1 / inf | 961 | I135V (ATT→GTT) | FTN78_chr0891 | hypothetical protein |
| * | CP043523 | 839,351 | 0 | G | A | 58.3% | 398.7 / inf | 995 | A144A (GCC→GCT) | FTN78_chr0891 | hypothetical protein |
| * | CP043523 | 839,374 | 0 | T | G | 58.2% | 673.6 / inf | 968 | R137R (AGA→CGA) | FTN78_chr0891 | hypothetical protein |
| * | CP043523 | 839,390 | 0 | T | C | 58.1% | 634.1 / inf | 966 | K131K (AAA→AAG) | FTN78_chr0891 | hypothetical protein |
| * | CP043523 | 839,360 | 0 | T | G | 57.8% | 589.5 / inf | 973 | A141A (GCA→GCC) | FTN78_chr0891 | hypothetical protein |
| * | CP043523 | 839,330 | 0 | A | G | 57.5% | 563.9 / inf | 981 | I151I (ATT→ATC) | FTN78_chr0891 | hypothetical protein |
| Marginal new junction evidence (lowest skew 10 of 48 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP043523 | 1861507 = | 4509 (8.610) | 412 (1.090) +41 bp |
166/216 | 0.1 | 11.2% | coding (393/681 nt) | FTN78_chr1909 | Mobile element protein |
| ? | CP043523 | 1911139 = | NA (NA) | intergenic (‑247/‑58) | FTN78_chr1956/FTN78_chr1957 | UPF0297 protein YrzL/Transposase | |||||
| * | ? | CP043523 | 1861168 = | 276 (0.530) | 337 (0.660) +CCC |
158/292 | 4.0 | 55.5% | coding (322/360 nt) | FTN78_chr1908 | neutral endopeptidase |
| ? | CP043523 | 1959013 = | NA (NA) | coding (493/840 nt) | FTN78_chr2013 | Mobile element protein | |||||
| * | ? | CP043523 | 838360 = | 497 (0.950) | 267 (0.540) +CACCGAG |
110/284 | 10.5 | 36.1% | intergenic (‑66/+92) | FTN78_chr0888/FTN78_chr0889 | hypothetical protein/General stress protein, Gls24 family |
| ? | CP043523 | 847992 = | NA (NA) | coding (239/255 nt) | FTN78_chr0898 | Mobile element protein | |||||
| * | ? | CP043523 | = 1883698 | 248 (0.470) | 274 (0.650) +29 bp |
87/240 | 11.3 | 63.0% | intergenic (+101/‑53) | FTN78_chr1928/FTN78_chr1929 | Transposase TnpA/Transposase TnpA |
| ? | CP043523 | 1883724 = | 153 (0.290) | intergenic (+127/‑27) | FTN78_chr1928/FTN78_chr1929 | Transposase TnpA/Transposase TnpA | |||||
| * | ? | CP043523 | = 1861545 | 4694 (8.970) | 299 (0.570) | 101/298 | 13.5 | 10.5% | coding (355/681 nt) | FTN78_chr1909 | Mobile element protein |
| ? | CP043523 | 1882699 = | 381 (0.730) | intergenic (+410/‑145) | FTN78_chr1926/FTN78_chr1927 | hypothetical protein/3‑ketoacyl‑CoA thiolase, Acetyl‑CoA acetyltransferase | |||||
| * | ? | CP043523 | 1 = | 0 (0.000) | 7415 (14.160) | 88/298 | 16.4 | 100% | intergenic (–/+2) | –/FTN78_chr0001 | –/Mobile element protein |
| ? | CP043523 | = 2416272 | 0 (0.000) | intergenic (+231/–) | FTN78_chr2511/– | tRNA‑Leu/– | |||||
| * | ? | CP043523 | = 795292 | 342 (0.650) | 183 (0.370) +CTCGGTG |
82/284 | 16.6 | 31.4% | coding (395/411 nt) | FTN78_chr0848 | Mobile element protein |
| ? | CP043523 | 838360 = | 497 (0.950) | intergenic (‑66/+92) | FTN78_chr0888/FTN78_chr0889 | hypothetical protein/General stress protein, Gls24 family | |||||
| * | ? | CP043523 | 336292 = | 395 (0.750) | 101 (0.200) +CTCGGTG |
56/284 | 24.1 | 19.2% | intergenic (+518/+92) | FTN78_chr0384/FTN78_chr0385 | tRNA‑specific adenosine‑34 deaminase/Mobile element protein |
| ? | CP043523 | 838360 = | 497 (0.950) | intergenic (‑66/+92) | FTN78_chr0888/FTN78_chr0889 | hypothetical protein/General stress protein, Gls24 family | |||||
| * | ? | CP043523 | = 234705 | 451 (0.860) | 181 (0.360) | 57/290 | 24.3 | 29.2% | intergenic (+79/+40) | FTN78_chr0290/FTN78_chr0291 | Transcription elongation factor GreA/Mobile element protein |
| ? | CP043523 | 235954 = | NA (NA) | intergenic (‑62/+12) | FTN78_chr0292/FTN78_chr0293 | Transposase/Putative transposase InsK for insertion sequence element IS150 | |||||
| * | ? | CP043523 | = 248417 | 1395 (2.780) | 289 (0.580) +CACTCACT |
46/270 | 26.4 | 17.6% | coding (8/576 nt) | FTN78_chr0306 | Mobile element protein |
| ? | CP043523 | 248418 = | 1414 (2.700) | coding (7/576 nt) | FTN78_chr0306 | Mobile element protein | |||||