Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F250 I1 R1
|
466 |
525.0 |
9216842 |
90.5% |
8341242 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP043523 |
1,884,816 |
A→C |
V166I (GTA→ATC) |
FTN78_chr1930 → |
Putative UV‑damage repair protein UvrX |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP043523 | 1,884,816 | 0 | A | C | 99.6%
| 928.6
/ NA
| 269 | V166I (GTA→ATC) | FTN78_chr1930 | Putative UV‑damage repair protein UvrX |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (134/134); minor base G (1/0); total (135/134) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 269 total aligned reads displayed.
GGGCGAAACGCACGTGGATTGTTCCTCCACAAATGCAGCTCTATGTGGACTATAAAATAGAAGTTACGGATATTCTAACCAATTATACATCAATTGATGAAATTCATTCTTACTCGATTGATGAGTCGTTTCTTGACGTAACAGAATCACTCAATTTCTTTTATCCTGAGATTAAAAATCGTTATGAACAAATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTCGGACTATATGTGACTGTGGGCATGGGA > CP043523/1884677‑1884942
|
gggCGAAACGCACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCat > 1:2235337/1‑149 (MQ=255)
cACGTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAActtctt < 1:1260069/150‑1 (MQ=255)
gTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTCTAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGACTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGCATCATTGAACTTCTTCTa < 2:4506488/150‑1 (MQ=255)
gTGGATTGTTCCTCCTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATGGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGACTCATTGAACTTcgtcta > 2:2233714/1‑145 (MQ=255)
tcctccTCAAATGCAGCTCTATGTGGAGTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGAt < 1:4061924/150‑1 (MQ=255)
tcctccTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGAt < 1:1131457/150‑1 (MQ=255)
ctcttcaAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATAAGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATGACAGAATCATTGAACTTCTTCTACCCTGAGATTa > 2:1810644/6‑150 (MQ=255)
tccTCAAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAGTCATTGAACTTCTTCTACCCTGAGATTaa > 1:3518498/1‑150 (MQ=255)
ctcaAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTaaaa < 1:1044079/148‑1 (MQ=255)
ctcaAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTaaaa < 1:2293269/148‑1 (MQ=255)
ctaaaaTGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTaaaa > 2:462388/4‑150 (MQ=255)
tcaAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTaaaaa > 1:198995/2‑150 (MQ=255)
tcaAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTaaaaa < 2:2330315/149‑1 (MQ=255)
caAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTTCTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAAt < 2:4028405/150‑1 (MQ=255)
caAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAAt < 1:4097620/150‑1 (MQ=255)
aaaTGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATc > 1:4476427/1‑150 (MQ=255)
aaaTGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATc < 1:394045/150‑1 (MQ=255)
aaTGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCg > 1:509568/1‑150 (MQ=255)
aaTGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCAATCCTACGCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGCACTTCTTCTACCCTGAGATTAAAAATCg > 2:4342629/1‑150 (MQ=255)
aTGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCga > 1:2449033/1‑149 (MQ=255)
tGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCgat > 1:1474119/1‑148 (MQ=255)
gCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATa < 2:3204446/150‑1 (MQ=255)
cAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGatat < 1:2691690/150‑1 (MQ=255)
cAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGatat < 1:823845/150‑1 (MQ=255)
cAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGatat < 1:3831677/150‑1 (MQ=255)
aGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATg < 2:619021/150‑1 (MQ=255)
aaGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAg < 1:4036428/150‑1 (MQ=255)
agtgacagATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGa < 1:915139/143‑1 (MQ=255)
aGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGa < 2:3920171/150‑1 (MQ=255)
gtgacagATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGAc < 1:1024740/144‑1 (MQ=255)
tgacagATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACt < 2:1743419/145‑1 (MQ=255)
gacagATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACtt > 2:944160/5‑150 (MQ=255)
acagATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTg < 1:2887281/147‑1 (MQ=255)
agATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCa < 1:444837/149‑1 (MQ=255)
gATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCaa < 2:775501/150‑1 (MQ=255)
atatACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAc > 1:1805262/1‑150 (MQ=255)
atatACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAc > 1:2718503/1‑150 (MQ=255)
atatACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAc > 1:582288/1‑150 (MQ=255)
tatactgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACg < 1:324710/143‑1 (MQ=255)
tatactgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACg < 1:2922425/143‑1 (MQ=255)
actgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTga > 1:531815/5‑150 (MQ=255)
ctgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTgag < 2:812981/147‑1 (MQ=255)
ctgaCCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTgag < 2:2369148/147‑1 (MQ=255)
ccAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTc > 1:1873924/1‑150 (MQ=255)
aaTTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCga > 2:1389069/1‑150 (MQ=255)
ttATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCgaga < 1:506070/150‑1 (MQ=255)
ttATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCgaga > 2:1040530/1‑150 (MQ=255)
tataCGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGAt > 1:3525382/1‑150 (MQ=255)
tataCGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGAt > 2:1593374/1‑150 (MQ=255)
ataCGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATa < 2:2315112/150‑1 (MQ=255)
ataCGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATa > 1:4011226/1‑150 (MQ=255)
ataCGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATa > 2:3172462/1‑150 (MQ=255)
ataCGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATa > 2:3070954/1‑150 (MQ=255)
tacgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATaa < 1:1644437/146‑1 (MQ=255)
taCGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATaa > 1:863267/1‑150 (MQ=255)
nacgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATaa > 2:2275852/5‑150 (MQ=255)
nacgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATaa > 2:2134895/5‑150 (MQ=255)
acgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATaaa > 2:2907920/4‑150 (MQ=255)
acgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATaaa > 2:3602893/4‑150 (MQ=255)
acgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATaaa < 1:4530403/147‑1 (MQ=255)
acgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATaaa < 2:865715/147‑1 (MQ=255)
acgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATaaa < 2:936264/147‑1 (MQ=255)
acgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATaaa < 1:137925/147‑1 (MQ=255)
cgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGTATATCTCATAATCATTGAACTTCTTCTACCATGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAAATTCTAGATaaag > 2:252893/3‑149 (MQ=255)
cgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATaaag < 2:2635315/148‑2 (MQ=255)
cgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAAc > 1:3156837/3‑150 (MQ=255)
cgtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAAc > 2:2692103/3‑150 (MQ=255)
gtCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACt > 1:3461897/2‑150 (MQ=255)
tCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACta > 2:3787604/1‑149 (MQ=255)
tCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACta < 2:2757915/150‑2 (MQ=255)
cAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACtag > 2:1901715/1‑148 (MQ=255)
cAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGAATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACtag < 1:3498137/150‑3 (MQ=255)
aTTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGa < 1:2193949/150‑1 (MQ=255)
aTTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGa > 2:66284/1‑150 (MQ=255)
aTTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGa > 1:4268388/1‑150 (MQ=255)
tgatgaGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACt < 2:2813193/150‑1 (MQ=255)
tgatgaGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACt > 1:3117620/1‑150 (MQ=255)
tgatgaGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACt < 2:4153002/150‑1 (MQ=255)
tgatgaGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTCAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACt < 2:4249076/150‑1 (MQ=255)
gatgaGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACta > 2:1548182/1‑150 (MQ=255)
gatgaGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACta < 1:1600661/150‑1 (MQ=255)
gatgaGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACta > 1:738057/1‑150 (MQ=255)
aagagattcactcCTACTCGATTGATGAATCTTTTTTTGTTATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACtat > 2:3689027/6‑150 (MQ=255)
tgagattcactcCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACtata < 2:2412675/146‑1 (MQ=255)
tgaGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGCATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACtata > 1:3479070/1‑150 (MQ=255)
tgaGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACtata > 2:874627/1‑150 (MQ=255)
gagattcactcCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTatat > 2:1313126/4‑150 (MQ=255)
gagattcactcCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTatat > 2:1309782/4‑150 (MQ=255)
gattcactcCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATAtgt < 2:2550515/149‑1 (MQ=255)
attcactcCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATAtgtg < 1:1744467/150‑1 (MQ=255)
ctcctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCAATGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtgt > 2:3889663/5‑150 (MQ=255)
tcctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtgtt > 2:3460837/4‑149 (MQ=255)
ctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtgttgg > 1:3337809/2‑147 (MQ=255)
ctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtgttgg > 1:3782192/2‑147 (MQ=255)
ctACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTtgg > 1:670203/2‑150 (MQ=255)
aCTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtgttggga > 2:4352327/1‑145 (MQ=255)
cTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtgttgggat < 2:1475534/150‑7 (MQ=255)
cTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACtgttgggat < 1:4149325/150‑7 (MQ=255)
tCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATg < 2:3413214/150‑1 (MQ=255)
gATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATggg > 2:518415/1‑150 (MQ=255)
|
GGGCGAAACGCACGTGGATTGTTCCTCCACAAATGCAGCTCTATGTGGACTATAAAATAGAAGTTACGGATATTCTAACCAATTATACATCAATTGATGAAATTCATTCTTACTCGATTGATGAGTCGTTTCTTGACGTAACAGAATCACTCAATTTCTTTTATCCTGAGATTAAAAATCGTTATGAACAAATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTCGGACTATATGTGACTGTGGGCATGGGA > CP043523/1884677‑1884942
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAATGCAGCTCTATGTGGACTATAAAATAGAAGTTACGGATATTCTAACCAATTATACATCAATTGATGAAATTCATTCTTACTCGATTGATGAGTCGTTTCTTGACGTAACAGAATCACTCAATTTCTTTTATCCTGAGATTAAAAATCGTTATGAACAAATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTCGGACTATATGTGACTGTGGGCATGGGAGACAATCCCTTGCTTGCCAAAC > CP043523/1884707‑1884964
|
AAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATC < SRR13214403.396221/150‑1 (MQ=29)
AAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATC > SRR13214403.2423697/1‑150 (MQ=29)
AAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATC < SRR13214403.3918843/150‑1 (MQ=29)
AAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATC > SRR13214403.4500308/1‑150 (MQ=29)
AAATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATC > SRR13214403.4508049/1‑150 (MQ=29)
AATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCG > SRR13214403.516322/1‑150 (MQ=28)
AATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCG > SRR13214403.512338/1‑150 (MQ=28)
AATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCG > SRR13214403.4542188/1‑150 (MQ=28)
ATGCAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAATTTCTTCTACCCTGAGATTAAAAATCGA > SRR13214403.4075168/1‑150 (MQ=29)
CAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATAT < SRR13214403.3849149/150‑1 (MQ=23)
CAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATAT < SRR13214403.828121/150‑1 (MQ=23)
CAGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATAT < SRR13214403.2703891/150‑1 (MQ=23)
AGCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATG < SRR13214403.622017/150‑1 (MQ=21)
GCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGA > SRR13214403.1916702/1‑150 (MQ=20)
GCTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGA > SRR13214403.1916764/1‑150 (MQ=20)
CTCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAA < SRR13214403.627951/150‑1 (MQ=19)
TCTATGTGGACTATAAAATTAAAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAAC < SRR13214403.3195723/150‑1 (MQ=18)
AAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAG > SRR13214403.2897899/1‑150 (MQ=28)
AAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAG > SRR13214403.2871959/1‑150 (MQ=28)
AAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAG < SRR13214403.2943872/150‑1 (MQ=28)
AAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAG > SRR13214403.578236/1‑150 (MQ=28)
AAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAG > SRR13214403.570973/1‑150 (MQ=28)
AAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAG < SRR13214403.385243/150‑1 (MQ=28)
AAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAG < SRR13214403.4055993/150‑1 (MQ=28)
AAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAG < SRR13214403.4055636/150‑1 (MQ=28)
AAGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAG < SRR13214403.1277945/150‑1 (MQ=28)
AGTGACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGA < SRR13214403.919770/150‑1 (MQ=29)
gtgacagatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGAC < SRR13214403.3235033/135‑1 (MQ=33)
gtgacagatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGAC < SRR13214403.1029835/135‑1 (MQ=33)
ACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTG < SRR13214403.2900247/150‑1 (MQ=35)
ACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTG < SRR13214403.2900300/150‑1 (MQ=35)
ACAGATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTG < SRR13214403.1480254/150‑1 (MQ=35)
agatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCA < SRR13214403.447298/140‑1 (MQ=40)
agatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCA > SRR13214403.3524086/11‑150 (MQ=40)
agatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCA < SRR13214403.3866629/140‑1 (MQ=40)
agatatactgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCA < SRR13214403.1498090/140‑1 (MQ=40)
GATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAA < SRR13214403.855392/150‑1 (MQ=39)
ATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAC > SRR13214403.584063/1‑150 (MQ=41)
ATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAC > SRR13214403.2747658/1‑150 (MQ=41)
ATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAC > SRR13214403.2730810/1‑150 (MQ=41)
ATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAC > SRR13214403.584193/1‑150 (MQ=41)
ATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAC > SRR13214403.585452/1‑150 (MQ=41)
ATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAC > SRR13214403.1813661/1‑150 (MQ=41)
ATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAC < SRR13214403.1715065/150‑1 (MQ=41)
ATATACTGACCAATTATACGTCAATTGATGAGATTCACTCCGACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAAC < SRR13214403.1715214/150‑1 (MQ=33)
TATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACG < SRR13214403.2935549/150‑1 (MQ=42)
TATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACG < SRR13214403.326529/150‑1 (MQ=42)
TATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACG < SRR13214403.2918984/150‑1 (MQ=42)
TATACTGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACG < SRR13214403.2075198/150‑1 (MQ=42)
actgACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGA > SRR13214403.534699/5‑150 (MQ=48)
TGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGA < SRR13214403.3471723/150‑1 (MQ=50)
TGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGA > SRR13214403.3345015/1‑150 (MQ=50)
TGACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGA < SRR13214403.400638/150‑1 (MQ=50)
GACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGAT > SRR13214403.3517147/1‑150 (MQ=51)
GACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGAT < SRR13214403.378560/150‑1 (MQ=51)
GACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGAT > SRR13214403.90925/1‑150 (MQ=51)
GACCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGAT < SRR13214403.403254/150‑1 (MQ=51)
CCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTC > SRR13214403.1087993/1‑150 (MQ=53)
CCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTC > SRR13214403.1687180/1‑150 (MQ=53)
CCAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTC > SRR13214403.1882622/1‑150 (MQ=53)
CAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCG > SRR13214403.342438/1‑150 (MQ=53)
CAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCG < SRR13214403.785101/150‑1 (MQ=53)
CAATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCG < SRR13214403.4325231/150‑1 (MQ=53)
AATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGA > SRR13214403.4151860/1‑150 (MQ=53)
AATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGA > SRR13214403.220704/1‑150 (MQ=53)
ATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAG < SRR13214403.4243945/150‑1 (MQ=53)
ATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAG > SRR13214403.2170362/1‑150 (MQ=53)
ATTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAG < SRR13214403.2832486/150‑1 (MQ=53)
TTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGA < SRR13214403.511593/150‑1 (MQ=53)
TTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGA < SRR13214403.508817/150‑1 (MQ=53)
TTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGA < SRR13214403.514636/150‑1 (MQ=53)
TTATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGA > SRR13214403.844792/1‑150 (MQ=53)
TATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGAT > SRR13214403.3540608/1‑150 (MQ=53)
TATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGAT > SRR13214403.3540837/1‑150 (MQ=53)
TATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGAT > SRR13214403.3541285/1‑150 (MQ=53)
ATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATA > SRR13214403.4030298/1‑150 (MQ=53)
ATACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATA < SRR13214403.3495979/150‑1 (MQ=53)
TACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAA > SRR13214403.867686/1‑150 (MQ=55)
TACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAA < SRR13214403.1652101/150‑1 (MQ=55)
TACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAA > SRR13214403.4260717/1‑150 (MQ=55)
ACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAA < SRR13214403.4554590/150‑1 (MQ=56)
ACGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAA < SRR13214403.138693/150‑1 (MQ=56)
CGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAAC > SRR13214403.3171270/1‑150 (MQ=58)
CGTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAAC > SRR13214403.3170949/1‑150 (MQ=58)
GTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACT > SRR13214403.3477424/1‑150 (MQ=60)
GTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACT > SRR13214403.2959526/1‑150 (MQ=60)
GTCAATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACT < SRR13214403.3160359/150‑1 (MQ=60)
AATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGG < SRR13214403.3484264/150‑1 (MQ=60)
ATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGA > SRR13214403.4289532/1‑150 (MQ=60)
ATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGA < SRR13214403.2204050/150‑1 (MQ=60)
ATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGA > SRR13214403.777687/1‑150 (MQ=60)
ATTGATGAGATTCACTCCTACTCGATTGATGAATCTTTTTTGGATATCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGA > SRR13214403.4111903/1‑150 (MQ=60)
TCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAAC > SRR13214403.1089824/1‑150 (MQ=60)
TCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAAC > SRR13214403.4058580/1‑150 (MQ=60)
TCACAGAATCATTGAACTTCTTCTACCCTGAGATTAAAAATCGATATGAACAGATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTAGGACTATATGTGACTGTTGGGATGGGAGACAACCCCTTGCTTGCCAAAC < SRR13214403.3983425/150‑1 (MQ=60)
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AAATGCAGCTCTATGTGGACTATAAAATAGAAGTTACGGATATTCTAACCAATTATACATCAATTGATGAAATTCATTCTTACTCGATTGATGAGTCGTTTCTTGACGTAACAGAATCACTCAATTTCTTTTATCCTGAGATTAAAAATCGTTATGAACAAATGAATCGAATTGCTTTAGACTTGCAACGTGAGATTCGAGATAAACTCGGACTATATGTGACTGTGGGCATGGGAGACAATCCCTTGCTTGCCAAAC > CP043523/1884707‑1884964
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
