Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
26 |
102.0 |
3326124 |
78.0% |
2594376 |
98.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP002094 |
1,875,806 |
+TT |
coding (566/762 nt) |
LLNZ_09765 ← |
phosphate transporter ATP‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP002094 | 1,875,804 | 1 | . | T | 80.7%
| 179.3
/ 25.3
| 57 | coding (568/762 nt) | LLNZ_09765 | phosphate transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (0/11); new base T (40/6); total (40/17) |
| Fisher's exact test for biased strand distribution p-value = 6.71e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| * | CP002094 | 1,875,804 | 2 | . | T | 80.7%
| 180.2
/ 25.3
| 57 | coding (568/762 nt) | LLNZ_09765 | phosphate transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (0/11); new base T (40/6); total (40/17) |
| Fisher's exact test for biased strand distribution p-value = 6.71e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TAACATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTC‑‑TT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGACACGAGCGA > CP002094/1875706‑1875893
||
tAACATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑Tttc < 1:218080/99‑1 (MQ=255)
tAACATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑Tttc > 2:1277011/1‑99 (MQ=255)
aaCATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑Tttc‑‑t < 1:181971/99‑1 (MQ=255)
aaCATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑Tttc‑‑t < 1:797597/99‑1 (MQ=255)
aCATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑Tttc‑‑tt > 1:539902/1‑99 (MQ=255)
cATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑Tttc‑‑ttt > 1:627564/1‑98 (MQ=255)
cATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑Tttc‑‑ttt < 2:755828/99‑2 (MQ=255)
cATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑Tttc‑‑ttt > 2:986020/1‑98 (MQ=255)
aTAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑Tttc‑‑tttt < 2:780453/99‑3 (MQ=255)
aTAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑Tttc‑‑tttt < 1:564583/99‑3 (MQ=255)
aTAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑Tttc‑‑tttt < 1:1496502/99‑3 (MQ=255)
aTAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTAGAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑Tttc‑‑tttt > 1:347024/1‑97 (MQ=255)
tAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑Tttc‑‑ttttc < 1:965971/99‑4 (MQ=255)
ggTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGa > 1:635575/1‑99 (MQ=255)
gTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAg > 2:585771/1‑99 (MQ=255)
gTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAg < 1:370837/99‑1 (MQ=255)
tACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGc > 2:168203/1‑99 (MQ=255)
tACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGc < 1:177347/99‑1 (MQ=255)
tCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTg > 2:1301329/1‑99 (MQ=255)
tCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTg > 2:1561026/1‑99 (MQ=255)
aaaTACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAAt > 2:1348595/1‑99 (MQ=255)
aaTACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAAtt > 1:1577596/1‑99 (MQ=255)
gATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCaa > 1:203922/1‑99 (MQ=255)
aTGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAg > 1:57969/1‑99 (MQ=255)
aTGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAg > 1:597382/1‑99 (MQ=39)
tgtttgttgCATACTGGGCGTCAGGATAGCTTTTGTATATTTTTTTTTAATTTCAAGC‑‑ATG‑‑G‑‑TTTC‑‑TTTGCGACAGGAGCCGCTGAAATTGGGTCAAgg < 2:1481439/96‑1 (MQ=255)
tGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAgg > 2:1299192/1‑99 (MQ=255)
tttgttgCATTCTTTGCATCAATATAGCTATTTTTTATTTTTTTTTAATTCCAAGC‑‑TGT‑‑G‑‑TTTC‑‑TTTCCGCCGCGAGCCGCTGAAATTGGGTCAAGGGc < 1:1278572/98‑1 (MQ=255)
gttgCATACTATGCGTCACGATAGCGTTTGTATAATTTTTTTTAATTTCAAGC‑‑ATG‑‑T‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGa < 2:214515/99‑1 (MQ=255)
ttgCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTgct > 1:795890/1‑97 (MQ=39)
gCATCCTGTGGGTCAATATAGGGTTTTTATATTTTTTTTTAAGTCCAAGC‑‑TGG‑‑T‑‑TTTT‑‑TTTCCGCCGCGAGCCGCTGAAATTGGGTCAAGGGCTGATGt < 1:1232652/99‑1 (MQ=255)
gCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGt > 1:1185191/1‑99 (MQ=39)
gCATACGATGCGTCACGATGGTGTTTTTATATTTTTTTTTAAGTTAAAGCTTTTT‑‑T‑‑TTTT‑‑TT‑‑CGACGGGAGCCGCTGAAATTGGGTCAAGGGCTGATGt < 1:639550/99‑1 (MQ=255)
aTACTATGCGTCACTATAGCTATTGTATAATTTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTT‑‑TTTGCGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTg < 2:573106/99‑1 (MQ=255)
tACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑TGACACGAGCCGCTGCAATTGGGTCAAGGGCTGATGTTgg > 1:153587/1‑99 (MQ=255)
tACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTgg > 2:1573779/1‑99 (MQ=255)
tACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTgg > 2:1557453/1‑99 (MQ=255)
aTGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCa > 2:1010952/1‑99 (MQ=255)
tGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCAt > 2:1602241/1‑99 (MQ=39)
tGCGTAACTTTATCGATTGTATATTTTTTTTAAATTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑TGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCAt < 2:1607393/99‑1 (MQ=255)
gTCACGATAGTGATTTTATATTTTTTTTTAATTTAAACC‑‑GTG‑‑T‑‑TTTT‑‑TTTCCGCCGGGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCa < 1:620963/99‑1 (MQ=255)
tCACGATAGCGATTTTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑GTTTTTT‑‑TT‑‑CGACGGGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCAt < 2:604081/99‑1 (MQ=255)
tCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAATGGCTGATGTTGGTTCATCCAt > 1:1221889/1‑99 (MQ=255)
aTAGCGATTGTATAATCTTTTTTAAGTTCAAGG‑‑ATGTTT‑‑TTTT‑‑TT‑‑CGACGCGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGa < 2:332107/99‑1 (MQ=255)
aTAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGa > 2:88252/1‑99 (MQ=39)
tAGCGATTGTATAATTTTTTTTAAGTTAAAGC‑‑TTG‑‑T‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGAt < 2:497323/99‑1 (MQ=255)
tAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGAt > 1:1006278/1‑99 (MQ=39)
gCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑CTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGCCTGATGTTGGCTCATCCATTAAGATaa > 1:206743/1‑99 (MQ=255)
cGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAAt > 2:1334900/1‑99 (MQ=38)
tataTTTTTTTTTAGGTTAAAGT‑‑TTG‑‑T‑‑TTTT‑‑TTTCCGACAGGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTgg < 1:311831/99‑1 (MQ=21)
tataATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTgg > 2:1074806/1‑99 (MQ=38)
tataATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTgg > 1:1056541/1‑99 (MQ=38)
ataATCTTTTTTAAGTCCAAGC‑‑AGG‑‑G‑‑TTTCTTTT‑‑GGAACCGAGCGGCTGAATTTGGGTAAAGGCCTGATGTTGTTTATTCATTTAGGTTAATTTCTggt > 2:343965/1‑98 (MQ=255)
aaTCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGAtt > 1:1249774/1‑99 (MQ=38)
aTCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTg > 1:1349529/1‑99 (MQ=38)
tCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGa > 1:391339/1‑99 (MQ=38)
tCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGa > 2:921135/1‑99 (MQ=38)
tttttttAAGTTCAAGC‑‑TTG‑‑G‑‑TTTT‑‑TTTGCGGCGCGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGAc < 1:1271244/98‑1 (MQ=25)
cTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGAc > 2:478255/1‑99 (MQ=38)
ttttttAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGAcc > 2:1370885/1‑99 (MQ=38)
ttttttAAGTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGAcc > 2:233864/1‑99 (MQ=38)
tAAGTTAAAGC‑‑GTG‑‑T‑‑TTTCTTTT‑‑CGACGCGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAg < 2:1659327/99‑1 (MQ=37)
aaGTTCAAGA‑‑ATG‑‑G‑‑TTTC‑‑TTTCCGACGCGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAgg < 2:96300/99‑1 (MQ=37)
gTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGac > 2:124012/1‑99 (MQ=38)
gTTCAAGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGac > 1:442479/1‑99 (MQ=38)
aaGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGTCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGACACGa > 2:205101/1‑99 (MQ=38)
aaGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGACACGa > 2:647000/1‑99 (MQ=38)
aGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGACACGAg > 2:246685/1‑99 (MQ=38)
aGC‑‑ATG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGACACGAg > 2:95740/1‑99 (MQ=38)
aTG‑‑G‑‑TTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGACACGAGCGa > 1:1258248/1‑99 (MQ=38)
||
TAACATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGC‑‑ATG‑‑G‑‑TTTC‑‑TT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGACACGAGCGA > CP002094/1875706‑1875893
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTC‑‑TT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGACACGAGCGATA > CP002094/1875707‑1875895
|
AACATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTC‑‑TT < SRR7892090.803974/100‑1 (MQ=60)
AACATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTC‑‑TT > SRR7892090.544784/1‑100 (MQ=60)
AACATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTC‑‑TT < SRR7892090.183628/100‑1 (MQ=60)
ACATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTC‑‑TT‑‑T > SRR7892090.632952/1‑100 (MQ=60)
CATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTAGAATCTTTTTTAAGTTCAAGCATGGTTTC‑‑TTtt > SRR7892090.350423/1‑98 (MQ=60)
ATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTC‑‑TTttc < SRR7892090.569700/100‑4 (MQ=60)
ATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTC‑‑TTttc < SRR7892090.1505514/100‑4 (MQ=60)
TAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTC‑‑TTttcg < SRR7892090.973008/100‑5 (MQ=60)
AAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGAC > SRR7892090.867382/1‑100 (MQ=60)
AGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACAC < SRR7892090.245680/100‑1 (MQ=60)
CGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGA > SRR7892090.640991/1‑100 (MQ=60)
GTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGC < SRR7892090.374468/100‑1 (MQ=60)
TACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGCC < SRR7892090.178949/100‑1 (MQ=60)
AAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATT > SRR7892090.1587387/1‑100 (MQ=60)
TGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAA > SRR7892090.205804/1‑100 (MQ=60)
GATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAG > SRR7892090.602664/1‑100 (MQ=60)
GATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAG > SRR7892090.58494/1‑100 (MQ=60)
caatatatcttcctataaaaaatttttttttttatttttTTTTTTAAGTTCAAGCATGGTTTT‑‑TTTCCGACGGGAGCCGCTGAAATTGGGTCAAGGGCTG < SRR7892090.1652656/61‑1 (MQ=39)
GTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGCT > SRR7892090.802246/1‑100 (MQ=60)
TGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGT > SRR7892090.1192850/1‑100 (MQ=60)
ATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑TGACACGAGCCGCTGCAATTGGGTCAAGGGCTGATGTTGG > SRR7892090.154921/1‑100 (MQ=60)
GTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAATGGCTGATGTTGGTTCATCCAT > SRR7892090.1229640/1‑100 (MQ=60)
ATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGAT > SRR7892090.1013435/1‑100 (MQ=60)
AGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGCTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGCCTGATGTTGGCTCATCCATTAAGATAA > SRR7892090.208657/1‑100 (MQ=60)
GTATAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGG > SRR7892090.1063851/1‑100 (MQ=60)
TAATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATT > SRR7892090.1257595/1‑100 (MQ=60)
AATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTG > SRR7892090.1357549/1‑100 (MQ=60)
ATCTTTTTTAAGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGA > SRR7892090.395181/1‑100 (MQ=60)
TTTTTTTAAGTTCAAGCTTGGTTTT‑‑TTTGCGGCGCGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACC < SRR7892090.1279096/100‑1 (MQ=60)
AGTTCAAGCATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGAC > SRR7892090.446615/1‑100 (MQ=60)
CATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGACACGAGCGA > SRR7892090.1266079/1‑100 (MQ=60)
ATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGACACGAGCGAT > SRR7892090.1393568/1‑100 (MQ=60)
ATGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGACACGAGCGAT > SRR7892090.1125239/1‑100 (MQ=60)
TGGTTTCTTTT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGACACGAGCGATA > SRR7892090.1406278/1‑100 (MQ=60)
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AACATAAAAGCGGTACGATCTGAAATACGTGATGCTTGTTGCATACTATGCGTCACGATAGCGATTGTATAATCTTTTTTAAGTTCAAGCATGGTTTC‑‑TT‑‑CGACACGAGCCGCTGAAATTGGGTCAAGGGCTGATGTTGGTTCATCCATTAAGATAATTTCTGGATTGACCGCAAGGACACGAGCGATA > CP002094/1875707‑1875895
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
