Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
26 |
102.0 |
3326124 |
78.0% |
2594376 |
98.8 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATATTATGGTCTGATAGGTCATGTTTTTAGTGCATAATTGCATAAAACGATTTGCATGCCCTCTGTTTCCCTCTAATGGTTTACAGGGATTCAATTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTTTTTATACCGTTAAAATCGGAAAAT > CP002094/2493133‑2493325
|
ATATTATGGTCTGATAGGTCATGTTTTTAGTGCATAATTGCATAAAACGATTTGCATGCCCTCTGTTTCCCTCTAATGGTTTACAGGGATTCAATTGAGC < SRR7892090.439197/100‑1 (MQ=60)
TTATGGTCTGATAGGTCATGTTTTTAGTGCATAATTGCATAAAACGATTTGCATGCCCTCTGTTTCCCTCTAATGGTTTACAGGGATTCAATTGAGCAAT < SRR7892090.279186/100‑1 (MQ=60)
TATGGTCTGATAGGTCATGTTTTTAGTGCATAATTGCATAAAACGATTTGCATGCCCTCTGTTTCCCTCTAATGGTTTACAGGGATTCAATTGAGCAATG > SRR7892090.396199/1‑100 (MQ=60)
TAGGTCATGTTTTTAGTGCATAATTGCATAAAACGATTTGCATGCCCTCTGTTTCCCTCTAATGGTTTACAGGGATTCAATTGAGCAATGAATACATTTT < SRR7892090.828945/100‑1 (MQ=60)
TTTAGTGCATAATTGCATAAAACGATTTGCATGCCCTCTGTTTCCCTCTAATGGTTTACAGGGATTCAATTGAGCAATGAATACATTTTGGTGTCTCCAT < SRR7892090.576414/100‑1 (MQ=60)
AGTGCATAATTGCATAAAACGATTTGCATGCCCTCTGTTTCCCTCTAATGGTTTACAGGGATTCAATTGAGCAATGAATACATTTTGGTGTCTCCATTTT < SRR7892090.1236241/100‑1 (MQ=60)
GTGCATAATTGCATAAAACGATTTGCATGCCCTCTGTTTCCCTCTAATGGTTTACAGGGATTCAATTGAGCAATGAATACATTTTGGTGTCTCCATTTTT < SRR7892090.113978/100‑1 (MQ=60)
GATTTGCATGCCCTCTGTTTCCCTCTAATGGTTTACAGGGATTCAATTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAA > SRR7892090.1098981/1‑100 (MQ=60)
TTCATGCCCTCTGTTTCCCTCTAATGGTTTACAGGGATTCAATTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAAC < SRR7892090.1612814/100‑1 (MQ=60)
cagccaaagctcgtatctgataattcataagtatATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCA > SRR7892090.483904/35‑100 (MQ=60)
CCCTCTGTTTCCCTCTAATGGTTTACAGGGATTCAATTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCC < SRR7892090.1068923/100‑1 (MQ=60)
agctcgtatctgataattcataagtatATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAA > SRR7892090.1221725/28‑100 (MQ=60)
gtatctgataattcataagtatATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTG > SRR7892090.533564/23‑100 (MQ=60)
tctgataattcataagtatATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTT < SRR7892090.251701/81‑1 (MQ=60)
ctgataattcataagtatATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTTT < SRR7892090.923656/82‑1 (MQ=60)
tgataattcataagtatATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTTTT > SRR7892090.617708/18‑100 (MQ=60)
tcataagtatATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTTTTTATACCG > SRR7892090.765204/11‑100 (MQ=60)
ataagtatATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTTTTTATACCGTT < SRR7892090.82202/92‑1 (MQ=60)
ataagtatATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTTTTTATACCGTT > SRR7892090.1290853/9‑100 (MQ=60)
aagtatATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTCTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTTTTTATACCGTTAA > SRR7892090.1504376/7‑100 (MQ=60)
ACAGGGATTCAATTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTTTTTATACCGTTAA > SRR7892090.979950/1‑100 (MQ=60)
tatATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTTTTTATACCGTTAAAAT > SRR7892090.733430/4‑100 (MQ=60)
atATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTTTTTATACCGTTAAAATC < SRR7892090.323558/98‑1 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTTTTTATACCGTTAAAATCGG > SRR7892090.1509827/1‑100 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAA > SRR7892090.405970/1‑62 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAA < SRR7892090.779484/60‑1 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATA < SRR7892090.1643039/57‑1 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAAT < SRR7892090.1189769/56‑1 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAAT < SRR7892090.889043/56‑1 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAAAAAAAAA > SRR7892090.1617090/1‑62 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAA < SRR7892090.979634/54‑1 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATA > SRR7892090.385013/1‑52 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATA > SRR7892090.1404304/1‑52 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTAT > SRR7892090.1585955/1‑51 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTT > SRR7892090.11950/1‑49 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCC < SRR7892090.1468519/46‑1 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTC < SRR7892090.271337/43‑1 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTC < SRR7892090.243393/43‑1 (MQ=60)
ATTCACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTT > SRR7892090.472834/1‑42 (MQ=60)
CACTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTTTTTATACCGTTAAAATCGGAAA > SRR7892090.1353244/1‑100 (MQ=60)
CTTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTTTTTATACCGTTAAAATCGGAAAAT > SRR7892090.434930/1‑100 (MQ=60)
|
ATATTATGGTCTGATAGGTCATGTTTTTAGTGCATAATTGCATAAAACGATTTGCATGCCCTCTGTTTCCCTCTAATGGTTTACAGGGATTCAATTGAGCAATGAATACATTTTGGTGTCTCCATTTTTTCTCCTTTATAAAATAAAAAAACCAGCCCGAAGACTGGTTTTTATACCGTTAAAATCGGAAAAT > CP002094/2493133‑2493325
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
