Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F21 I1 R7 781 589.5 21734725 98.3% 21365234 134.3

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAGGAGGAATAATGGAATATCAACACTGGTTACGTGAAGCAATAAGCCAACTTCAGGCGAGCGAAAGCCCGCGGCGTGATGCTGAAATCCTGCTGGAGCATGTTACCGGCAGAGGGCGTACTTTTATTCTCGCCTTTGGTGAAACGCAGCTG  >  NZ_CP025268/1272100‑1272251
   |                                                                                                                                                    
GAGCAGGAATAATGGAATATCAACACTGGTTACGTGAAGCAATAAGCCAACTTCAGGCtgtctcttatacacatctccgagcccacgagacctctctacatctcgtatgccgtcttctgcttgaaaagggggggggggggggggggggggg   >  SRR14920197.1896300/1‑58 (MQ=60)
 AGCAGGAATAATGGAATATCAACACTGGTTACGTGAAGCAATAActgtctcttatacacatctccgagcccacgagacctctctacatcgcgtatgccgtcttctgcttgaaaaggggggggggggggggggggggggggggggggggggg  >  SRR14920197.6827315/1‑44 (MQ=60)
 AGCAGGAATAATGGAATATCAACACTGGTTACGTGAAGCAATAAGCCAACTTCAGGCtgtctcttatacacatctccgagcccacgagacctctctacatctcgtatgccgtcttctgcttgaaaaggggggggggggggggggggggggg  >  SRR14920197.5717579/1‑57 (MQ=60)
 AGCAGGAATAATGGAATATCAACACTGGTTACGTGAAGCAATAAGCCAACTTCAGGCGAGCGAAAGCCCGCGGCGTGATGCTGAAATCCTGCTGGAGCATGTTACCGGCAGAGGGCGTACTTTTATTCTCGCCTTTGGTGAAACGCAGCTG  >  SRR14920197.4769509/1‑151 (MQ=60)
 AGCAGGAATAATGGAATATCAACACTGGTTACGTGAAGCAATAAGCCAACTTCAGGCGAGCGAAAGCCCGCGGCGTGATGCTGAAATCCTGCTGGAGCATGTTACCGGCAGAGGGCGTACTTTTATTCTCGCCTTTGGTGAAACGCAGCTG  >  SRR14920197.8583199/1‑151 (MQ=60)
 AGCAGGAATAATGGAATATCAACACTGGGTACGTGAAGCAATAAGCCAACTTCAGGCGAGCGAAAGCCCGCGGCGTGATGCTGAAATCCTGCTGGAGCATGTTACCGGCAGAGGGCGTACTTTTATTCTCGCCGGTGGTGAAACGCAGCTG  >  SRR14920197.7266093/1‑151 (MQ=60)
   |                                                                                                                                                    
GAGGAGGAATAATGGAATATCAACACTGGTTACGTGAAGCAATAAGCCAACTTCAGGCGAGCGAAAGCCCGCGGCGTGATGCTGAAATCCTGCTGGAGCATGTTACCGGCAGAGGGCGTACTTTTATTCTCGCCTTTGGTGAAACGCAGCTG  >  NZ_CP025268/1272100‑1272251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑