Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I1 R1 782 316.7 10427156 97.0% 10114341 138.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP025268 2,790,751 A→G pseudogene (333/2252 nt) CXP41_RS24390 → alpha‑amylase family glycosyl hydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252682,790,7510AG99.4% 549.1 / NA 165pseudogene (333/2252 nt)CXP41_RS24390alpha‑amylase family glycosyl hydrolase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (110/54);  minor base C (0/1);  total (110/55)
Fisher's exact test for biased strand distribution p-value = 3.33e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 165 total aligned reads displayed.

AAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGA‑TA‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAA  >  NZ_CP025268/2790620‑2790884
                                                                                                                                   |                                                                                                                                       
aaaGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTCGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATACGTTTATCa                                                                                                                                 <  2:3674643/140‑1 (MQ=255)
      attaATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACgaga                                                                                                                           <  1:595108/140‑1 (MQ=255)
      attaATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACgaga                                                                                                                           >  1:3329293/1‑140 (MQ=255)
             aTCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑Tacaatg                                                                                                                   <  2:3215016/140‑6 (MQ=255)
              tCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATCCAACTTACCGAGAGTTGAATAAAGCAGCACCGCGTAGCATTACAGCGCCAGACAGGATAGTAGAAAGAAAAACATAGGTTTATCAACGAGA‑Tacactgc                                                                                                                  >  1:4596833/1‑134 (MQ=255)
              tCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGa                                                                                                                  >  1:1676212/1‑140 (MQ=255)
                 gTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTg                                                                                                               <  1:3771629/140‑1 (MQ=255)
                  ttAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGa                                                                                                              >  1:1509038/1‑140 (MQ=255)
                  ttAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGa                                                                                                              >  1:1213774/1‑140 (MQ=255)
                    aaaaaaCGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGaaa                                                                                                            <  2:662520/140‑1 (MQ=255)
                       aaaCGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAagag                                                                                                         >  2:37666/1‑140 (MQ=255)
                          cGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTg                                                                                                      >  1:1266285/1‑140 (MQ=255)
                            aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATCAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt                                                                                                    >  2:4102065/1‑140 (MQ=255)
                            aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGCAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt                                                                                                    >  1:4172825/1‑140 (MQ=255)
                            aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt                                                                                                    >  1:2753647/1‑140 (MQ=255)
                            aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt                                                                                                    >  2:3897490/1‑140 (MQ=255)
                            aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt                                                                                                    >  2:4370195/1‑140 (MQ=255)
                            aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt                                                                                                    >  1:55085/1‑140 (MQ=255)
                            aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt                                                                                                    >  1:4850470/1‑140 (MQ=255)
                            aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt                                                                                                    >  1:4748980/1‑140 (MQ=255)
                            aTTATAAAATTTCCCTTTCACCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATGGAAAGAGGTGAt                                                                                                    >  1:2753662/1‑140 (MQ=255)
                                 aaaaTTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCATACAGGATATGAGAAAGAAAAACATAGGTTTATCTACGATA‑TACAATGATTGAAAGAGGTGATAACAg                                                                                               <  2:4557644/140‑1 (MQ=255)
                                   aaTTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCg                                                                                             <  1:2597732/140‑1 (MQ=255)
                                           tttCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTAt                                                                                     <  1:1956364/140‑1 (MQ=255)
                                             tctcCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCa                                                                                   >  2:2194264/1‑140 (MQ=255)
                                             tctcCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCa                                                                                   >  2:702175/1‑140 (MQ=255)
                                                    aTACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGt                                                                            >  2:2892068/1‑140 (MQ=255)
                                                      aCAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCg                                                                          <  1:4974750/140‑1 (MQ=255)
                                                        aaCTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTg                                                                        >  2:3470681/1‑140 (MQ=255)
                                                         aCTTACCGACAGCTGAATAAAGCATCACAGCGTCGCATTACAGCGCCAGAAAGGATAGGAGAAAGAAAAAGATAGGTTTATCAACGAGA‑TACCATGATGGAAAGAGGTGATAACAGCGTTGGTTAGCAGTATGGTCGTGc                                                                       >  2:1189515/1‑140 (MQ=255)
                                                           ttACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTg                                                                     <  1:1747247/140‑1 (MQ=255)
                                                           ttACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTg                                                                     <  2:4854237/140‑1 (MQ=255)
                                                             aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGttt                                                                                       >  2:2951274/1‑120 (MQ=255)
                                                             aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGttt                                                                                       <  1:2951274/120‑1 (MQ=255)
                                                             aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa                                                                   <  2:420034/140‑1 (MQ=255)
                                                             aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa                                                                   >  2:381882/1‑140 (MQ=255)
                                                             aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa                                                                   >  1:4015007/1‑140 (MQ=255)
                                                              ccGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGCTAGGAGAAAGAAAAAAATAGGTTTATCAAAGAGA‑TACAATGATCGAAAGAGGTGATAAGAGCGGTGTTTATCAGTATGGTCGTGCGGAAc                                                                  >  2:1884131/1‑140 (MQ=255)
                                                              ccGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATTAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAAc                                                                  <  1:3797041/140‑1 (MQ=255)
                                                               cGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACa                                                                 >  1:3435493/1‑140 (MQ=255)
                                                                  gagTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACAttt                                                              >  1:692006/1‑140 (MQ=255)
                                                                    gTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCa                                                            >  1:313278/1‑140 (MQ=255)
                                                                     ttGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAc                                                           >  1:4472598/1‑140 (MQ=255)
                                                                      tGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAcc                                                          <  2:5084976/140‑1 (MQ=255)
                                                                      tGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAcc                                                          <  1:3399448/140‑1 (MQ=255)
                                                                       gAATAAAGCAGCAGAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAccc                                                         <  2:4463888/140‑1 (MQ=255)
                                                                       gAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAccc                                                         >  1:956724/1‑140 (MQ=255)
                                                                        aaTAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCca                                                        >  1:4137293/1‑140 (MQ=255)
                                                                          tAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCcaca                                                      <  2:1676212/140‑1 (MQ=255)
                                                                             agcagcACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATta                                                   >  1:3899957/1‑140 (MQ=255)
                                                                             agcagcACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATta                                                   >  2:792021/1‑140 (MQ=255)
                                                                             agcagcACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATta                                                   >  2:3168197/1‑140 (MQ=255)
                                                                             agcagcACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATta                                                   >  2:1556493/1‑140 (MQ=255)
                                                                             agcagcACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATta                                                   >  1:662173/1‑140 (MQ=255)
                                                                                  gcccgCGTCGCATTGCACCGCCAGACAGGATAGGAGAAAGAAATACATAGTCTCATCAGCGAGACCC‑CATGATAGAAAGAGGGGAGAACAGCGACGGTAAGCAGTATGGTCGTGCCGAACATTTCACCCACATCACATCt                                              >  2:4751742/5‑140 (MQ=255)
                                                                                  cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGC‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt                                              >  1:135870/1‑140 (MQ=255)
                                                                                  cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAcc                                                          >  2:3724831/1‑128 (MQ=255)
                                                                                  cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCCCATTATATCt                                              >  1:135578/1‑140 (MQ=255)
                                                                                  cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt                                              >  1:4372811/1‑140 (MQ=255)
                                                                                       cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCg                                                                                             >  2:4744493/1‑88 (MQ=255)
                                                                                       cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa                                         >  2:1981620/1‑140 (MQ=255)
                                                                                       cGTAGCATTACAGCGCAAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAAAGAGA‑TAGAATGATGGAAAGAGGTGATGACAGCGGTGTTTATCAGTATGATAGAACTGAACATTGCATCCACATTATATCTGACaa                                         >  2:843196/1‑140 (MQ=255)
                                                                                         tAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAAc                                       >  2:5007582/1‑140 (MQ=255)
                                                                                         tAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAAc                                       >  1:787144/1‑140 (MQ=255)
                                                                                            cATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCtt                                    >  1:2021630/1‑140 (MQ=255)
                                                                                                 cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGGTTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                               >  1:4576749/1‑140 (MQ=255)
                                                                                                 cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTa                                                                                <  1:513799/91‑1 (MQ=255)
                                                                                                 cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                               >  2:2895746/1‑140 (MQ=255)
                                                                                                 cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                               >  1:4301875/1‑140 (MQ=255)
                                                                                                 cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                               >  2:3894658/1‑140 (MQ=255)
                                                                                                  aGCGTCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaa                              <  2:3374625/140‑1 (MQ=255)
                                                                                                  aGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaa                              <  1:3622207/140‑1 (MQ=255)
                                                                                                  aGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaa                              <  2:4015007/140‑1 (MQ=255)
                                                                                                    cgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGttt                                                                                       >  1:2144246/1‑81 (MQ=255)
                                                                                                    cgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaaaa                            >  1:3267117/1‑140 (MQ=255)
                                                                                                      ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGAt                                                                                                                 <  2:5131981/53‑1 (MQ=255)
                                                                                                      ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGAt                                                                                                                 <  2:5131910/53‑1 (MQ=255)
                                                                                                      ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGAt                                                                                                                 >  1:5131910/1‑53 (MQ=255)
                                                                                                      ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGa                          >  1:2474663/1‑140 (MQ=255)
                                                                                                         gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa                       >  2:4001363/1‑140 (MQ=255)
                                                                                                         gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa                       >  2:5176516/1‑140 (MQ=255)
                                                                                                         gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa                       <  2:5008917/140‑1 (MQ=255)
                                                                                                              gATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATg                  <  2:3089945/140‑1 (MQ=255)
                                                                                                              gATAGGAGAAAGAAAAACATAGGTTTATAAACGAGG‑GAGAATGATGGAAAGAAGTAATAACAGCGGTGTTTATAAGAAGGGTCGAGCTGAACAAATCAAGCACATTATATCTGAAAGAAGTTCAACAAAAGATaaaaagg                  >  2:3026064/1‑136 (MQ=255)
                                                                                                               aTAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGt                 >  1:1797608/1‑140 (MQ=255)
                                                                                                                    agaaagaaAAACATAGGTTTATCAACGAGA‑TACAATGGTTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCat            <  2:4576749/140‑1 (MQ=255)
                                                                                                                     gaaagaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata           <  1:4374375/140‑1 (MQ=255)
                                                                                                                        cgaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  2:1678048/2‑140 (MQ=255)
                                                                                                                        agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                               >  2:2492604/1‑117 (MQ=255)
                                                                                                                        agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa                               <  1:2492604/117‑1 (MQ=255)
                                                                                                                        agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCatattc        >  2:926027/1‑138 (MQ=255)
                                                                                                                        agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata           >  2:621471/1‑137 (MQ=255)
                                                                                                                        agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  1:503230/1‑140 (MQ=255)
                                                                                                                        agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  2:3469367/1‑140 (MQ=255)
                                                                                                                        agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  2:3544528/1‑140 (MQ=255)
                                                                                                                        agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  1:881983/1‑140 (MQ=255)
                                                                                                                        agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCGGACAAACCTTCCCCAAAAGATAAATAGGTTGCATATGc        >  2:2245465/1‑140 (MQ=255)
                                                                                                                        agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACAGTTCTCCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  1:3699450/1‑140 (MQ=255)
                                                                                                                        agaaaAACATAGGTTTATCAACGAGA‑TACAAGGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc        >  2:2245981/1‑140 (MQ=255)
                                                                                                                         gaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGCGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCt       <  1:4743529/140‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                       
AAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGA‑TA‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAA  >  NZ_CP025268/2790620‑2790884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAACTTTTCACGCAGAAAAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATA‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACTATGAG  >  NZ_CP025268/2790603‑2790900
                                                                                                                                                    |                                                                                                                                                      
CAACTTTTCACGCAGAAAAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGT                                                                                                                                                      >  SRR14920191.1826388/1‑151 (MQ=60)
            CAGAAAAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA                                                                                                                                          >  SRR14920191.3338731/1‑151 (MQ=60)
                    GTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATCCAACTTACCGAGAGTTGAATAAAGCAGCACCGCGTAGCATTACAGCGCCAGACAGGATAGTAGAAAGAAAAACATAGGTTTATCAACGAGATAcactgc                                                                                                                                  >  SRR14920191.4610519/1‑145 (MQ=60)
                    GTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGA                                                                                                                                  >  SRR14920191.3405603/1‑151 (MQ=60)
                    GTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGA                                                                                                                                  >  SRR14920191.454712/1‑151 (MQ=60)
                    GTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGA                                                                                                                                  >  SRR14920191.1680754/1‑151 (MQ=60)
                      TATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATT                                                                                                                                >  SRR14920191.421241/1‑151 (MQ=60)
                       ATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTG                                                                                                                               <  SRR14920191.596804/151‑1 (MQ=60)
                        TTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGA                                                                                                                              >  SRR14920191.1513112/1‑151 (MQ=60)
                        TTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGA                                                                                                                              >  SRR14920191.1217007/1‑151 (MQ=60)
                                CTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTG                                                                                                                      >  SRR14920191.1269622/1‑151 (MQ=60)
                                 TGTTAACAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGA                                                                                                                     >  SRR14920191.402919/1‑151 (MQ=60)
                                  GTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGCAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGAT                                                                                                                    >  SRR14920191.4184923/1‑151 (MQ=60)
                                  GTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGAT                                                                                                                    >  SRR14920191.2761000/1‑151 (MQ=60)
                                  GTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGAT                                                                                                                    >  SRR14920191.4868437/1‑151 (MQ=60)
                                  GTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGAT                                                                                                                    >  SRR14920191.4864665/1‑151 (MQ=60)
                                  GTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGAT                                                                                                                    >  SRR14920191.4762972/1‑151 (MQ=60)
                                  GTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGAT                                                                                                                    >  SRR14920191.55284/1‑151 (MQ=60)
                                  GTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGAT                                                                                                                    <  SRR14920191.3782202/151‑1 (MQ=60)
                                  GTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGAT                                                                                                                    >  SRR14920191.380699/1‑151 (MQ=60)
                                  GTTAAAAAACGATTATAAAATTTCCCTTTCACCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATGGAAAGAGGTGAT                                                                                                                    >  SRR14920191.2761015/1‑151 (MQ=60)
                                             ATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGT                                                                                                         >  SRR14920191.3320039/1‑151 (MQ=60)
                                                    ctgatcggtctcgtgggctcggagatgtgtataagagacagAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAG                                                                                                  <  SRR14920191.4758476/110‑1 (MQ=60)
                                                    AATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAG                                                                                                  <  SRR14920191.2604649/151‑1 (MQ=60)
                                                    AATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAG                                                                                                  <  SRR14920191.1680730/151‑1 (MQ=60)
                                                         CCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGG                                                                                             >  SRR14920191.1808630/1‑151 (MQ=60)
                                                          aagagacagAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGT                                                                                            <  SRR14920191.2959669/142‑1 (MQ=60)
                                                            TTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCG                                                                                          <  SRR14920191.1477451/151‑1 (MQ=60)
                                                            TTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCG                                                                                          <  SRR14920191.1961674/151‑1 (MQ=60)
                                                                 atcggtctcgtggggtcggagatgtgtataagagacagGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTG                                                                                     <  SRR14920191.515238/113‑1 (MQ=60)
                                                                   AGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAA                                                                                   >  SRR14920191.4026597/1‑151 (MQ=60)
                                                                   AGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAA                                                                                   >  SRR14920191.5023420/1‑151 (MQ=60)
                                                                     ATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACA                                                                                 >  SRR14920191.3445103/1‑151 (MQ=60)
                                                                       ACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATT                                                                               <  SRR14920191.4989176/151‑1 (MQ=60)
                                                                        CAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTT                                                                              >  SRR14920191.694009/1‑151 (MQ=60)
                                                                          ACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCA                                                                            >  SRR14920191.314207/1‑151 (MQ=60)
                                                                           CTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAC                                                                           >  SRR14920191.4485595/1‑151 (MQ=60)
                                                                            TTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACC                                                                          <  SRR14920191.1751985/151‑1 (MQ=60)
                                                                             TACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCC                                                                         <  SRR14920191.2247222/151‑1 (MQ=60)
                                                                             TACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCC                                                                         >  SRR14920191.959330/1‑151 (MQ=60)
                                                                              ACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCA                                                                        >  SRR14920191.4149293/1‑151 (MQ=60)
                                                                               CCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATTAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCAC                                                                       <  SRR14920191.3807711/151‑1 (MQ=60)
                                                                                   GAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTA                                                                   >  SRR14920191.3911193/1‑151 (MQ=60)
                                                                                   GAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTA                                                                   >  SRR14920191.664087/1‑151 (MQ=60)
                                                                                       TGAATAAAGCAGCACAGCGTCGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATC                                                               <  SRR14920191.262657/151‑1 (MQ=60)
                                                                                       TGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATC                                                               <  SRR14920191.3409005/151‑1 (MQ=60)
                                                                                       TGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATC                                                               <  SRR14920191.2564861/151‑1 (MQ=60)
                                                                                       GGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATC                                                               <  SRR14920191.3735299/151‑1 (MQ=60)
                                                                                        GAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGCTACAATGATGGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCAAATTATATCT                                                              >  SRR14920191.136284/1‑151 (MQ=60)
                                                                                        GAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCCCCCCCATTATATCT                                                              >  SRR14920191.135992/1‑151 (MQ=60)
                                                                                        GAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCT                                                              >  SRR14920191.1300511/1‑151 (MQ=60)
                                                                                        GAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCT                                                              >  SRR14920191.2826190/1‑151 (MQ=60)
                                                                                        GAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCT                                                              >  SRR14920191.4385564/1‑151 (MQ=60)
                                                                                             AAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAA                                                         >  SRR14920191.594347/1‑151 (MQ=60)
                                                                                             AAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAA                                                         >  SRR14920191.2050968/1‑151 (MQ=60)
                                                                                               GCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAAC                                                       >  SRR14920191.789377/1‑151 (MQ=60)
                                                                                                  GCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTT                                                    >  SRR14920191.2027143/1‑151 (MQ=60)
                                                                                                       GCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGGTTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCA                                               >  SRR14920191.4590190/1‑151 (MQ=60)
                                                                                                       GCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCA                                               >  SRR14920191.4314303/1‑151 (MQ=60)
                                                                                                          TAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCtgtctcttatacacatctccgagcccacgagaccgatcagtatctcg                                            >  SRR14920191.2150071/1‑104 (MQ=60)
                                                                                                          TAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAA                                            >  SRR14920191.3276410/1‑151 (MQ=60)
                                                                                                            GCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGctgtctcttatacacatctccgagcccacgagaccgatcagtatctcgtatgccgtcttctgcttgaaaaaacacc                                          >  SRR14920191.5146727/1‑75 (MQ=60)
                                                                                                            GCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGctgtctcttatacacatctccgagcccacgagaccgatcagtatctcgtatgccgtcttctgcttgaaaaaaaaaa                                          >  SRR14920191.5146656/1‑75 (MQ=60)
                                                                                                            GCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGA                                          >  SRR14920191.396954/1‑151 (MQ=60)
                                                                                                            GCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGA                                          >  SRR14920191.2481294/1‑151 (MQ=60)
                                                                                                                  tataagagacagGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATA                                    <  SRR14920191.2499266/139‑1 (MQ=60)
                                                                                                                  CAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATA                                    <  SRR14920191.704200/151‑1 (MQ=60)
                                                                                                                   AGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATATAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATAT                                   <  SRR14920191.3632107/151‑1 (MQ=60)
                                                                                                                   AGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATAT                                   <  SRR14920191.3632188/151‑1 (MQ=60)
                                                                                                                   AGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGGGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATAT                                   <  SRR14920191.4382945/151‑1 (MQ=60)
                                                                                                                     CGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGT                                 >  SRR14920191.1802494/1‑151 (MQ=60)
                                                                                                                              GGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAACAGATAAATATGTTGCATATGC                        >  SRR14920191.4437047/1‑151 (MQ=60)
                                                                                                                              GGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGC                        >  SRR14920191.3054844/1‑151 (MQ=60)
                                                                                                                              GGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGC                        <  SRR14920191.848728/151‑1 (MQ=60)
                                                                                                                              GGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGC                        >  SRR14920191.504639/1‑151 (MQ=60)
                                                                                                                              GGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGC                        >  SRR14920191.884429/1‑151 (MQ=60)
                                                                                                                              GGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGC                        >  SRR14920191.1780245/1‑151 (MQ=60)
                                                                                                                              GGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACAGTTCTCCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGC                        >  SRR14920191.3709701/1‑151 (MQ=60)
                                                                                                                               GATAGGAGAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCT                       <  SRR14920191.471774/151‑1 (MQ=60)
                                                                                                                                      GAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACA                <  SRR14920191.623248/151‑1 (MQ=60)
                                                                                                                                      GAAAGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACA                <  SRR14920191.4387133/151‑1 (MQ=60)
                                                                                                                                         AGAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACActg             >  SRR14920191.1359147/1‑148 (MQ=60)
                                                                                                                                          GAAAAACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGCGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCC            <  SRR14920191.4757511/151‑1 (MQ=60)
                                                                                                                                               ACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACT       >  SRR14920191.3058279/1‑151 (MQ=60)
                                                                                                                                               ACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACT       >  SRR14920191.3058384/1‑151 (MQ=60)
                                                                                                                                               ACATAGGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACT       >  SRR14920191.988469/1‑151 (MQ=60)
                                                                                                                                                    GGTTTATCAACGAGATACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACTATGAG  >  SRR14920191.1778925/1‑151 (MQ=60)
                                                                                                                                                    |                                                                                                                                                      
CAACTTTTCACGCAGAAAAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGATA‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAACATTCCTGACTATGAG  >  NZ_CP025268/2790603‑2790900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑