Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I1 R1 782 316.7 10427156 97.0% 10114341 138.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP025268 2,996,161 A→G *73* (TAA→TAG CXP41_RS15615 → protein YgeI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252682,996,1610AG98.0% 329.4 / ‑6.9 101*73* (TAA→TAGCXP41_RS15615protein YgeI
Reads supporting (aligned to +/- strand):  ref base A (0/1);  major base G (56/42);  minor base T (2/0);  total (58/43)
Fisher's exact test for biased strand distribution p-value = 5.08e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 101 total aligned reads displayed.

CACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAAACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATTTA  >  NZ_CP025268/2996030‑2996295
                                                                                                                                   |                                                                                                                                      
caccTCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGa                                                                                                                                <  2:2933050/140‑1 (MQ=255)
cacaTCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGa                                                                                                                                <  1:3305753/140‑1 (MQ=255)
     cAACACCAGTGCTACTGATACAGATCAAATACAAGCCTTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCaaa                                                                                                                           >  1:4638491/1‑140 (MQ=255)
     cAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCaaa                                                                                                                           <  2:1781258/140‑1 (MQ=255)
     cAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCGATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCaaa                                                                                                                           >  2:2973276/1‑140 (MQ=255)
     cAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCGATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCaaa                                                                                                                           >  2:2973388/1‑140 (MQ=255)
      aaCACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCaaat                                                                                                                          <  1:2674273/140‑1 (MQ=255)
        cacCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCaaataa                                                                                                                        >  2:2570407/1‑140 (MQ=255)
          ccAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCaaataaat                                                                                                                      <  1:1716409/140‑1 (MQ=255)
             gTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAaataat                                                                                                                   >  1:5102563/1‑140 (MQ=255)
             gTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCAt                                                                                                                   >  1:1839612/1‑140 (MQ=255)
             gTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCAt                                                                                                                   >  1:1904903/1‑140 (MQ=255)
             gTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCAt                                                                                                                   >  2:4720358/1‑140 (MQ=255)
             gTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCAt                                                                                                                   >  1:4454866/1‑140 (MQ=255)
             gTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCAt                                                                                                                   <  2:1021471/140‑1 (MQ=255)
             gTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCAt                                                                                                                   >  2:3188669/1‑140 (MQ=255)
             gTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCAt                                                                                                                   >  2:177361/1‑140 (MQ=255)
              tGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATa                                                                                                                  <  2:678562/140‑1 (MQ=255)
              tGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATa                                                                                                                  <  2:678599/140‑1 (MQ=255)
               gCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATaa                                                                                                                 <  1:3480654/140‑1 (MQ=255)
                   cTGATACAGATCCAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACgag                                                                                                             >  2:5134266/1‑140 (MQ=255)
                    tGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACgaga                                                                                                            <  2:4454866/140‑1 (MQ=255)
                     gATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGAt                                                                                                           <  1:525745/140‑1 (MQ=255)
                     gATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGAt                                                                                                           <  2:4142865/140‑1 (MQ=255)
                     gATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGAt                                                                                                           <  2:2612359/140‑1 (MQ=255)
                     gATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGAt                                                                                                           <  1:4697735/140‑1 (MQ=255)
                     gATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGAt                                                                                                           <  1:691267/140‑1 (MQ=255)
                     gATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGAt                                                                                                           <  1:4917785/140‑1 (MQ=255)
                       tACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATAc                                                                                                         <  1:4423719/140‑1 (MQ=255)
                        aCAGATCAAATACAAGCATTTATAGTTTCAACATGTATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACt                                                                                                        >  2:1566109/1‑140 (MQ=255)
                        aCAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACt                                                                                                        >  1:5118673/1‑140 (MQ=255)
                        aCAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACt                                                                                                        >  1:4180265/1‑140 (MQ=255)
                        aCAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGGATTCAGAAGGCAGTCCTATCTCACCTTACTATGAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACt                                                                                                        >  2:638541/1‑140 (MQ=255)
                            aTCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTta                                                                                                    >  1:1097571/1‑140 (MQ=255)
                            aTCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTta                                                                                                    >  1:1319482/1‑140 (MQ=255)
                             tCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTTAGAAGATAATCCTATCTCACCTTACTCTAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAAAGAGATACTTTtat                                                                                                   >  2:3864900/1‑140 (MQ=255)
                             tCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTtat                                                                                                   >  1:459162/1‑140 (MQ=255)
                             tCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTtat                                                                                                   >  1:1791765/1‑140 (MQ=255)
                             tCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCGCACCTTACTATAAAATTGAGTGGGAGACGATTGACCAAATAAATCATAACGAGATACTTTtat                                                                                                   >  2:1349504/1‑140 (MQ=255)
                              cAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTtata                                                                                                  <  1:1629937/140‑1 (MQ=255)
                                aaTACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTataat                                                                                                >  1:2104494/1‑140 (MQ=255)
                                 aTACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTAGTCAGAAGATAATCCTATCTCACCGTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTataata                                                                                               <  1:2541287/140‑1 (MQ=255)
                                  tACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAg                                                                                              <  2:2322795/140‑1 (MQ=255)
                                      aGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTAtc                                                                                          >  1:250246/1‑140 (MQ=255)
                                      aGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTAtc                                                                                          >  2:1721357/1‑140 (MQ=255)
                                      aGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTAtc                                                                                          >  1:250360/1‑140 (MQ=255)
                                      aGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTATTATAATAGTAtc                                                                                          >  2:1722401/1‑140 (MQ=255)
                                      aGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGAGATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTATACGATTCACCAAATAAATCATAACGAGATACTTTTATAATAGTAtc                                                                                          >  1:583127/1‑140 (MQ=255)
                                      aGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGACATGAATCCAGAAGATAATCCTATCACACCTTACTATAAAATTGAGCGGTAGACGATTGACCAAATATATCGTACCGAGATACTTTTATAATAGTAtc                                                                                          <  1:3104239/140‑1 (MQ=255)
                                           ttATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGtt                                                                                     >  1:2022489/1‑140 (MQ=255)
                                           ttATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGtt                                                                                     >  2:1583048/1‑140 (MQ=255)
                                            tataGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTc                                                                                    >  1:1470008/1‑140 (MQ=255)
                                              taGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCt                                                                                  <  2:4638491/140‑1 (MQ=255)
                                                 ttttAACATGGATGGGGCCTTTTGAAAATGAGATGTATTCAGAAGATAATCCTATCTCACTTTAATATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATATCGTTACTttc                                                                               >  2:1915586/1‑140 (MQ=255)
                                                  ttCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTATACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTttca                                                                              >  1:4330540/1‑140 (MQ=255)
                                                   tCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTTACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTttcat                                                                             >  2:2557256/1‑140 (MQ=255)
                                                   tCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTttcat                                                                             >  1:2678355/1‑140 (MQ=255)
                                                   tCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTttcat                                                                             >  1:3617628/1‑140 (MQ=255)
                                                   tCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTttcat                                                                             >  1:3619576/1‑140 (MQ=255)
                                                   tCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTttcat                                                                             >  2:5092218/1‑140 (MQ=255)
                                                    cAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTttcatt                                                                            <  1:2924126/140‑1 (MQ=255)
                                                    cAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTttcatt                                                                            <  1:4081933/140‑1 (MQ=255)
                                                    cAACATCGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCCCCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTttcatt                                                                            <  2:583106/140‑1 (MQ=255)
                                                                  ccTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACAt                                                              >  2:884269/1‑140 (MQ=255)
                                                                      ttCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGaaa                                                          >  1:4006796/1‑140 (MQ=255)
                                                                               atatGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATgcg                                                 <  1:4372270/140‑1 (MQ=255)
                                                                               atatGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATgcg                                                 <  1:1250575/140‑1 (MQ=255)
                                                                               atatGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATgcg                                                 <  1:3188669/140‑1 (MQ=255)
                                                                                       tCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCaa                                         >  2:889689/1‑140 (MQ=255)
                                                                                            agaTAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGtt                                    <  1:2765415/140‑1 (MQ=255)
                                                                                             gaTAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTa                                   <  1:4078004/140‑1 (MQ=255)
                                                                                                       tctcACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACt                                                                                                        >  2:4756029/1‑61 (MQ=255)
                                                                                                       tctcACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACt                                                                                                        <  1:4756029/61‑1 (MQ=255)
                                                                                                       tctcACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAAc                         >  1:1589593/1‑140 (MQ=255)
                                                                                                         tcACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCa                       >  1:1202792/1‑140 (MQ=255)
                                                                                                            ccTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCCCACATGAACAAATATGCGCTCACCAAAAGTTAACTTCTTAACCATCt                    >  2:251922/1‑140 (MQ=255)
                                                                                                             cTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCtt                   >  1:5055756/1‑140 (MQ=255)
                                                                                                               tACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCa                 >  1:4612854/1‑140 (MQ=255)
                                                                                                                aCTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGAt                                                                                                           <  2:2259188/49‑1 (MQ=255)
                                                                                                                aCTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGAt                                                                                                           >  1:2259188/1‑49 (MQ=255)
                                                                                                                aCTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCAc                >  2:3125383/1‑140 (MQ=255)
                                                                                                                 cTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACg               <  1:889689/140‑1 (MQ=255)
                                                                                                                  tataAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCACCTTCACGt              <  2:3668973/140‑1 (MQ=255)
                                                                                                                   ataAAATTGAGTGGTAGACGATTGACCAAATAAATCCTAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGtt             <  1:5134266/140‑1 (MQ=255)
                                                                                                                   ataAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGtt             >  2:1730882/1‑140 (MQ=255)
                                                                                                                   ataAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGtt             <  2:2614158/140‑1 (MQ=255)
                                                                                                                   ataAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGtt             <  2:2613783/140‑1 (MQ=255)
                                                                                                                    taAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGttt            <  1:3744122/140‑1 (MQ=255)
                                                                                                                       aaTTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGt         <  2:250246/140‑1 (MQ=255)
                                                                                                                       aaTTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGt         <  2:250360/140‑1 (MQ=255)
                                                                                                                       aaTTGAGTAGTAAACGATTCACCTATCCAATCATACAGAAATATTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCCCATATCAAACAATATGCGCTCACCAAAAGTTAAATTCTTCACCAACTTCACGTTTTGt         <  2:4368656/140‑1 (MQ=255)
                                                                                                                            aggggTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCTCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTGTGTAtatt    >  2:3071556/4‑140 (MQ=255)
                                                                                                                            aGTGGTAGACGATTGACCAAATAAATCATAACGAGAt                                                                                                           <  1:916654/37‑1 (MQ=255)
                                                                                                                            aGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTTTTAACCATCTTCACGTTTTGTAtatt    >  2:1750004/1‑140 (MQ=255)
                                                                                                                            aGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTAtatt    >  1:1020443/1‑140 (MQ=255)
                                                                                                                            aGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTAtatt    >  1:2822372/1‑140 (MQ=255)
                                                                                                                            aGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTAtatt    >  2:4504127/1‑140 (MQ=255)
                                                                                                                            aGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTAtatt    >  2:1448835/1‑140 (MQ=255)
                                                                                                                            aGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATACGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTAtatt    >  1:593437/1‑140 (MQ=255)
                                                                                                                              tGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTAtattta  <  2:2104494/140‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                      
CACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAAACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATTTA  >  NZ_CP025268/2996030‑2996295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAAACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATTTATTACAAAAATGTC  >  NZ_CP025268/2996013‑2996308
                                                                                                                                                    |                                                                                                                                                   
TCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGAC                                                                                                                                                   <  SRR14920191.1883448/151‑1 (MQ=60)
TCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGAC                                                                                                                                                   <  SRR14920191.4675136/151‑1 (MQ=60)
   ataagagacagAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGAT                                                                                                                                                <  SRR14920191.4683445/140‑1 (MQ=60)
   TATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGAT                                                                                                                                                <  SRR14920191.3064837/151‑1 (MQ=60)
   TATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGAT                                                                                                                                                <  SRR14920191.4357968/151‑1 (MQ=60)
   TATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGAT                                                                                                                                                <  SRR14920191.4357665/151‑1 (MQ=60)
        tcttgtgttgttactattatatttttttcaagcagaagacggcatactagatactgatcggtctcgtgggctcggagatgtgtataagagacagATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACC                                                                                                                                           <  SRR14920191.1759006/57‑1 (MQ=60)
        ggtgaaagcgcaggcgctggtggtttttcaagcagaagacggcatacgagatactgatcggtctcgtgggctcggagatgtgtataagagacagATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACC                                                                                                                                           <  SRR14920191.1759025/57‑1 (MQ=60)
        agatgtgtataagagacagCCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACC                                                                                                                                           <  SRR14920191.2681524/132‑1 (MQ=60)
        agatcgagttgaaaaaaagtatttttttcaagcagaagacggcatacgagatactgatcggtctcgtgggctcggagatgtgtataagagacagATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACC                                                                                                                                           <  SRR14920191.1759024/57‑1 (MQ=60)
           GATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCCTTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAA                                                                                                                                        >  SRR14920191.4652245/1‑151 (MQ=60)
                 CACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATC                                                                                                                                  <  SRR14920191.3315151/151‑1 (MQ=60)
                   CATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATctgtctcttatacaca                                                                                                                                >  SRR14920191.2011809/1‑135 (MQ=60)
                   CATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATctgtctcttatacaca                                                                                                                                >  SRR14920191.2012151/1‑135 (MQ=60)
                   CATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGAGCAAATAAATCAT                                                                                                                                >  SRR14920191.4467815/1‑151 (MQ=60)
                   CATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCAT                                                                                                                                >  SRR14920191.1844600/1‑151 (MQ=60)
                   CATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCAT                                                                                                                                >  SRR14920191.1910062/1‑151 (MQ=60)
                   CATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATAAT                                                                                                                                >  SRR14920191.5117246/1‑151 (MQ=60)
                       AACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACG                                                                                                                            <  SRR14920191.2681373/151‑1 (MQ=60)
                           CCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGAT                                                                                                                        <  SRR14920191.1721057/151‑1 (MQ=60)
                              GTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACT                                                                                                                     >  SRR14920191.5133391/1‑151 (MQ=60)
                              GTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACT                                                                                                                     >  SRR14920191.4192380/1‑151 (MQ=60)
                                GCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTT                                                                                                                   <  SRR14920191.3490362/151‑1 (MQ=60)
                                  TACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTA                                                                                                                 >  SRR14920191.1100496/1‑151 (MQ=60)
                                  TACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTA                                                                                                                 >  SRR14920191.1322937/1‑151 (MQ=60)
                                   ACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTAT                                                                                                                >  SRR14920191.1796636/1‑151 (MQ=60)
                                   ACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTAT                                                                                                                >  SRR14920191.460476/1‑151 (MQ=60)
                                      attcgagaagttggctcgcatttttgcaagcagaagacggcatacgtgatactgatcgggctcgggggctcggagatgtgtataagagacagCTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAAT                                                                                                             <  SRR14920191.919167/59‑1 (MQ=60)
                                      GATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAAT                                                                                                             <  SRR14920191.4711604/151‑1 (MQ=60)
                                      GATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAAT                                                                                                             <  SRR14920191.4932102/151‑1 (MQ=60)
                                      GATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAAT                                                                                                             <  SRR14920191.693269/151‑1 (MQ=60)
                                      GATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAAT                                                                                                             >  SRR14920191.2110227/1‑151 (MQ=60)
                                      GATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAAT                                                                                                             <  SRR14920191.527214/151‑1 (MQ=60)
                                        TACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAG                                                                                                           <  SRR14920191.4436594/151‑1 (MQ=60)
                                         ttcaagcagaagacggcatacgagatactgatcggtctcgtgggctcggagatgtgtataagagacagAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGT                                                                                                          <  SRR14920191.4770033/83‑1 (MQ=60)
                                            GATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATC                                                                                                       >  SRR14920191.251103/1‑151 (MQ=60)
                                            GATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATC                                                                                                       >  SRR14920191.250988/1‑151 (MQ=60)
                                            GATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGAGATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTATACGATTCACCAAATAAATCATAACGAGATACTTTTATAATAGTATC                                                                                                       >  SRR14920191.584794/1‑151 (MQ=60)
                                               CAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCG                                                                                                    <  SRR14920191.1634349/151‑1 (MQ=60)
                                                 AATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTT                                                                                                  >  SRR14920191.2028006/1‑151 (MQ=60)
                                                  ATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTC                                                                                                 >  SRR14920191.1473963/1‑151 (MQ=60)
                                                  ATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTAGTCAGAAGATAATCCTATCTCACCGTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTC                                                                                                 <  SRR14920191.2548080/151‑1 (MQ=60)
                                                       AGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGACATGAATCCAGAAGATAATCCTATCACACCTTACTATAAAATTGAGCGGTAGACGATTGACCAAATATATCGTACCGAGATACTTTTATAATAGTATCTCGTTCCTTTC                                                                                            <  SRR14920191.3113113/151‑1 (MQ=60)
                                                        GCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTATACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCA                                                                                           >  SRR14920191.4343135/1‑151 (MQ=60)
                                                         CATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCAT                                                                                          >  SRR14920191.2685469/1‑151 (MQ=60)
                                                         CATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCAT                                                                                          >  SRR14920191.3627598/1‑151 (MQ=60)
                                                         CATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCAT                                                                                          >  SRR14920191.3629552/1‑151 (MQ=60)
                                                                     CAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACA                                                                              <  SRR14920191.4093750/151‑1 (MQ=60)
                                                                     CAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACA                                                                              <  SRR14920191.2932409/151‑1 (MQ=60)
                                                                            GATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAA                                                                       >  SRR14920191.4018374/1‑151 (MQ=60)
                                                                                                ATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAG                                                   <  SRR14920191.1253879/151‑1 (MQ=60)
                                                                                                ATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAG                                                   <  SRR14920191.4385021/151‑1 (MQ=60)
                                                                                                ATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAG                                                   <  SRR14920191.3197798/151‑1 (MQ=60)
                                                                                                             AGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAAC                                      >  SRR14920191.1593883/1‑151 (MQ=60)
                                                                                                             AGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAAC                                      <  SRR14920191.2772806/151‑1 (MQ=60)
                                                                                                              GATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACC                                     <  SRR14920191.4089775/151‑1 (MQ=60)
                                                                                                               ATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCA                                    >  SRR14920191.1206002/1‑151 (MQ=60)
                                                                                                                   TCCTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTT                                >  SRR14920191.5070339/1‑151 (MQ=60)
                                                                                                                     CTATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCA                              >  SRR14920191.4626575/1‑151 (MQ=60)
                                                                                                                      TATCTCACCTTACTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATctgtctcttatacacatctccgagcccacgagaccgatcagtatctcgtatgccgtcttctgcttgaaaaaaaaataact                             >  SRR14920191.2265275/1‑71 (MQ=60)
                                                                                                                                  CTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATT                 <  SRR14920191.892148/151‑1 (MQ=60)
                                                                                                                                  CTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATT                 >  SRR14920191.1023194/1‑151 (MQ=60)
                                                                                                                                  CTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATT                 >  SRR14920191.2829924/1‑151 (MQ=60)
                                                                                                                                  CTATAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATACGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATT                 >  SRR14920191.595129/1‑151 (MQ=60)
                                                                                                                                    ATAAAATTGAGTGGTAGACGATTGACCAAATAAATCCTAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATTTA               <  SRR14920191.5149016/151‑1 (MQ=60)
                                                                                                                                     TAAAATTGAGTGGTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATTTAT              <  SRR14920191.3754639/151‑1 (MQ=60)
                                                                                                                                                 GTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACGTGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATTTATTACAAAAATGTC  >  SRR14920191.4129835/1‑151 (MQ=60)
                                                                                                                                                 GTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATTTATTACAAAAATGTC  >  SRR14920191.1738022/1‑151 (MQ=60)
                                                                                                                                                 GTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATTTATTACAAAAATGTC  >  SRR14920191.1738147/1‑151 (MQ=60)
                                                                                                                                                 GTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATTTATTACAAAAATGTC  >  SRR14920191.4427502/1‑151 (MQ=60)
                                                                                                                                                 GTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATTTATTACAAAAATGTC  >  SRR14920191.1954065/1‑151 (MQ=60)
                                                                                                                                                 GTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATTTATTACAAAAATGTC  >  SRR14920191.3012347/1‑151 (MQ=60)
                                                                                                                                                 GTAGACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATTTATTACAAAAATGTC  >  SRR14920191.255932/1‑151 (MQ=60)
                                                                                                                                                    |                                                                                                                                                   
TCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTTCAACATGGATGGCGCCTTTTCAAAATGATATGTATTCAGAAGATAATCCTATCTCACCTTACTATAAAATTGAGTGGTAAACGATTGACCAAATAAATCATAACGAGATACTTTTATAATAGTATCTCGTTCCTTTCATTCAATCCTCACACATGAAAAAATATGCGCTCACCAAAAGTTAAATTCTTAACCATCTTCACGTTTTGTATATTTATTACAAAAATGTC  >  NZ_CP025268/2996013‑2996308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: