Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I1 R2 870 341.9 11209456 97.2% 10895591 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP025268 1,797,084 T→C *155* (TAA→TAG)  nlpC ← NlpC/P60 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252681,797,0840TC100.0% 322.9 / NA 100*155* (TAA→TAG) nlpCNlpC/P60 family protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (56/44);  total (56/44)

GTCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATATTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTT  >  NZ_CP025268/1796958‑1797217
                                                                                                                              |                                                                                                                                     
gTCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCg                                                                                                                          >  2:5186111/1‑140 (MQ=255)
  ccTTTTTTTATATTATCCTGATTATAAACGACTAATCCATTTACGGAGTTTTTGTCTGCGAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATAATCGCTGTCCATTTTTCGACATCCTAGATTCGTCTCGcc                                                                                                                        >  2:3479768/1‑140 (MQ=255)
                 tCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTc                                                                                                         >  2:1740276/1‑140 (MQ=255)
                 tCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTc                                                                                                         <  1:2030131/140‑1 (MQ=255)
                 tCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTc                                                                                                         <  1:2031239/140‑1 (MQ=255)
                 tCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTc                                                                                                         >  2:5375672/1‑140 (MQ=255)
                  ccTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCt                                                                                                        <  1:5375672/140‑1 (MQ=255)
                  ccTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCt                                                                                                        <  1:2116942/140‑1 (MQ=255)
                        tataAACGCATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCACGAGTAAATGGGCGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAAt                                                                                                  <  2:4083844/140‑1 (MQ=255)
                        tataAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAAt                                                                                                  <  1:1714849/140‑1 (MQ=255)
                          taAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAg                                                                                                <  1:3580625/140‑1 (MQ=255)
                           aaaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGa                                                                                               >  2:2534041/1‑140 (MQ=255)
                           aaaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGa                                                                                               >  2:2534237/1‑140 (MQ=255)
                             aCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACa                                                                                             <  1:2895684/140‑1 (MQ=255)
                               gAATAATCCATTTCCGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACAtt                                                                                           <  2:2684597/140‑1 (MQ=255)
                                aataatCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGTCATACTAGATTCGTCTCGCCTGCCAGAATTTTTTCTGCCAATAGACATTa                                                                                          >  2:4135255/1‑140 (MQ=255)
                                aataatCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTGGCCTGCCAGAAATTTTTCTGCCAATAGACATTa                                                                                          >  2:1418346/1‑140 (MQ=255)
                                aataatCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTa                                                                                          >  2:4909534/1‑140 (MQ=255)
                                 ataatCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCACTAGACATTAt                                                                                         >  2:4162219/1‑140 (MQ=255)
                                  taatCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATc                                                                                        >  2:4674113/1‑140 (MQ=255)
                                  taatCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCAATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATc                                                                                        <  1:2999854/140‑1 (MQ=255)
                                    atCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCaa                                                                                      <  1:3837338/140‑1 (MQ=255)
                                     tCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCGTCGCCGGCCATTTTTCGACATACTAGATTCGTCTCGCCTGCGAGAAATTTGTCTGCGAATAGACATTATCAAg                                                                                     >  2:4531241/1‑140 (MQ=255)
                                      ccATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGt                                                                                    <  1:684012/140‑1 (MQ=255)
                                         tttACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAg                                                                                 <  1:1883981/140‑1 (MQ=255)
                                         tttACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAg                                                                                 >  2:641426/1‑140 (MQ=255)
                                         tttACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTAGCAAGTGAg                                                                                 >  2:728819/1‑140 (MQ=255)
                                          ttACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAgg                                                                                >  2:4339178/1‑140 (MQ=255)
                                           tACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGa                                                                               <  1:5059492/140‑1 (MQ=255)
                                            aCGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGaa                                                                              <  1:3941341/140‑1 (MQ=255)
                                            aCGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGaa                                                                              <  1:2065301/140‑1 (MQ=255)
                                              ggAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACg                                                                            <  1:3020652/140‑1 (MQ=255)
                                              ggAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACg                                                                            <  1:3021346/140‑1 (MQ=255)
                                                   ttttGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGCCGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCa                                                                       <  1:1608357/140‑1 (MQ=255)
                                                   ttttGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCa                                                                       >  2:2268238/1‑140 (MQ=255)
                                                     ttGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGACCGCATCACt                                                                     <  1:1915510/140‑1 (MQ=255)
                                                     ttGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACt                                                                     <  1:509086/140‑1 (MQ=255)
                                                     ttGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACt                                                                     <  1:4527595/140‑1 (MQ=255)
                                                     ttGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACt                                                                     <  2:242620/140‑1 (MQ=255)
                                                     ttGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACCAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACt                                                                     <  1:4430366/140‑1 (MQ=255)
                                                        tCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTccc                                                                  <  1:4746596/140‑1 (MQ=255)
                                                          tGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCtt                                                                >  2:2912799/1‑140 (MQ=255)
                                                          tGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCtt                                                                >  2:1543567/1‑140 (MQ=255)
                                                            cAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTTTCGGAAAGTTTTCTGCCAATAGAAAATATCATTTTAGGGACCCATCACTGCCTTgg                                                              >  1:2170697/1‑139 (MQ=255)
                                                                         tATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTg                                                 >  2:317787/1‑140 (MQ=255)
                                                                         tATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTg                                                 >  2:317707/1‑140 (MQ=255)
                                                                         tATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTg                                                 >  2:3577581/1‑140 (MQ=255)
                                                                         tATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTg                                                 >  2:90951/1‑140 (MQ=255)
                                                                         tATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTg                                                 >  2:2493324/1‑140 (MQ=255)
                                                                         tATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTg                                                 >  2:4063888/1‑140 (MQ=255)
                                                                         tATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCAACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAGCACTCCCTTGCTGGTAGAGGCGTg                                                 >  2:4397442/1‑140 (MQ=255)
                                                                         tATTCAGGAGTAAATGGACGGCGATGTAACATCGCCGTTCATTTTTCGACATACGAGAGTCGTCTCGCCTGCGAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTTCCTTTTCGGTAGAggggag                                                 >  2:2615988/1‑136 (MQ=255)
                                                                           ttCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGa                                               >  2:1809992/1‑140 (MQ=255)
                                                                           ttCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGa                                               >  2:3752136/1‑140 (MQ=255)
                                                                           ttCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGGCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGa                                               >  2:5564146/1‑140 (MQ=255)
                                                                              aGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATaa                                            >  2:4023669/1‑140 (MQ=255)
                                                                              aGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATaa                                            >  2:1157236/1‑140 (MQ=255)
                                                                              aGGAGTAAATGCACGGCGCTGTATCATCGCCGCCCACTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAACTATTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACACCCTTGCTGGTAGACACGTGGATaa                                            >  2:1108706/1‑140 (MQ=255)
                                                                                gAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAAt                                          >  2:2266629/1‑140 (MQ=255)
                                                                                gAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAAt                                          <  1:3067214/140‑1 (MQ=255)
                                                                                   tAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCa                                                                       >  2:2870379/1‑108 (MQ=255)
                                                                                   tAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCa                                                                       <  1:2870379/108‑1 (MQ=255)
                                                                                   tAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTgg                                       >  2:4606213/1‑140 (MQ=255)
                                                                                     aaTGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGCGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGgtt                                     >  2:4839829/1‑140 (MQ=255)
                                                                                     aaTGGACGGCGATGTATCATCGCCGGCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGCACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGgtt                                     >  2:3262359/1‑140 (MQ=255)
                                                                                     aaTGGACGGCGATGTATCATCGCCGACCATTTTTCGACATACTAGATTCGTCTCGCCTCCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAAATgggt                                     >  2:371400/1‑138 (MQ=255)
                                                                                     aaTGGACGGCGATGTATCATCGCAGTCAATTTTTCGACATACTAGATTAGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGCGAAATTGgtt                                     >  2:4101549/1‑140 (MQ=255)
                                                                                         gACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGttgttg                                 <  1:4174903/140‑1 (MQ=255)
                                                                                           cGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAATTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTggg                               >  2:565600/1‑139 (MQ=255)
                                                                                           cGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGt                               <  1:2776735/140‑1 (MQ=255)
                                                                                           cGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGt                               <  1:134761/140‑1 (MQ=255)
                                                                                           cGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTGGGt                               >  2:566141/1‑140 (MQ=255)
                                                                                             gCGATGTATCATCGCCGTCCATTTGTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCGGCCAATAGACATTAGCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTAt                             >  2:4246274/1‑140 (MQ=255)
                                                                                              cGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATc                            <  1:2335770/140‑1 (MQ=255)
                                                                                                 tGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTa                         <  2:1947411/140‑1 (MQ=255)
                                                                                                 tGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTa                         >  2:2742509/1‑140 (MQ=255)
                                                                                                  gTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTaa                        <  1:5079338/140‑1 (MQ=255)
                                                                                                   tATCTTCGCCGTCCATTTTTCTACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTaaa                       <  1:2520819/140‑1 (MQ=255)
                                                                                                   tATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTaaa                       <  1:3261906/140‑1 (MQ=255)
                                                                                                   tATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTaaa                       <  1:3918147/140‑1 (MQ=255)
                                                                                                   tATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTaaa                       <  1:814629/140‑1 (MQ=255)
                                                                                                        tcGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCGTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCt                  <  2:763300/140‑1 (MQ=255)
                                                                                                        tcGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCt                  >  2:421768/1‑140 (MQ=255)
                                                                                                        tcGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCt                  <  1:245266/140‑1 (MQ=255)
                                                                                                        tcGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCt                  >  2:3295640/1‑140 (MQ=255)
                                                                                                        tcGCCGTCCATTTTTCGACATACTAGATTAGTCTCGCCTGACAGAAATTTTTATGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAAAGGCGTGGATAAATTGATTGTTGGTATCGTAAATACCt                  >  2:1894033/1‑140 (MQ=255)
                                                                                                        tcGCCGTCCATGTTTCGACATACTAGAGTCGTCGCGCCCGCCAGAAATTCGTCTGCCAATAGACATTAACAAGTGAGGAACGCATCACTCGCTTGCTGGTAGAGGCGTGGATACATTGGTTGTTGGTATCGTAAATAGCt                  >  2:4487025/1‑140 (MQ=255)
                                                                                                          gCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTAc                >  2:4366204/1‑140 (MQ=255)
                                                                                                            cGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACAt              <  1:1064031/140‑1 (MQ=255)
                                                                                                             gTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATg             >  2:4324187/1‑140 (MQ=255)
                                                                                                              tCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGc            >  2:3401358/1‑140 (MQ=255)
                                                                                                              tCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGc            >  2:1042532/1‑140 (MQ=255)
                                                                                                              tCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGc            >  2:5526037/1‑140 (MQ=255)
                                                                                                              tCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGc            <  1:1396303/140‑1 (MQ=255)
                                                                                                              tCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCAGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGc            >  2:4485186/1‑140 (MQ=255)
                                                                                                              tCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCAGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGc            >  2:4485022/1‑140 (MQ=255)
                                                                                                                cATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCaa          <  1:2070098/140‑1 (MQ=255)
                                                                                                                      tCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCAtt    <  1:2722729/140‑1 (MQ=255)
                                                                                                                        gACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGTATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCAtttt  >  2:1540473/1‑140 (MQ=255)
                                                                                                                        gACATACTAGATTCGTCGCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAAGACCTACATGCAAACCAtttt  <  2:2722460/140‑1 (MQ=255)
                                                                                                                              |                                                                                                                                     
GTCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATATTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTT  >  NZ_CP025268/1796958‑1797217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATGTTAACCACTTTTTCAGGGGTCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATATTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTTTG  >  NZ_CP025268/1796937‑1797234
                                                                                                                                                   |                                                                                                                                                      
ATGTTAACCACTTTTTCAGGGGTCCTTTTTTTAGATTCTCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAG                                                                                                                                                     <  SRR14920167.310067/151‑1 (MQ=60)
ATGTTAACCACTTTTTCAGGGGTCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAG                                                                                                                                                     <  SRR14920167.3762917/151‑1 (MQ=60)
   TTAACCACTTTTTCAGGGGTCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATT                                                                                                                                                  <  SRR14920167.2678852/151‑1 (MQ=60)
   TTAACCACTTTTTCAGGGGTCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATT                                                                                                                                                  <  SRR14920167.3798843/151‑1 (MQ=60)
   TTAACCACTTTTTCAGGGGTCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATT                                                                                                                                                  <  SRR14920167.3386124/151‑1 (MQ=60)
   TTAACCACTTTTTCAGGGGTCCTTTTTTTAGATTATCATCATTATAAACGAATTATCCATTTACGGATTTTTTGCCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTCTCATCGCCGTCCCTTTTTCGACATACTAGATT                                                                                                                                                  <  SRR14920167.3292835/151‑1 (MQ=60)
    TAACCACTTTTTCAGGGGTCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTC                                                                                                                                                 <  SRR14920167.311928/151‑1 (MQ=60)
                                      TCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGAC                                                                                                               <  SRR14920167.2034368/151‑1 (MQ=60)
                                      TCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGAC                                                                                                               <  SRR14920167.2035476/151‑1 (MQ=60)
                                       CCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACA                                                                                                              <  SRR14920167.5387769/151‑1 (MQ=60)
                                       CCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACA                                                                                                              <  SRR14920167.2121397/151‑1 (MQ=60)
                                             TATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCA                                                                                                        <  SRR14920167.1718372/151‑1 (MQ=60)
                                               TAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAG                                                                                                      <  SRR14920167.3588471/151‑1 (MQ=60)
                                                  ACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGA                                                                                                   <  SRR14920167.2901637/151‑1 (MQ=60)
                                                   TGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTCCCAGAAATTTTTttgtccatacacctttttaaaaaag                                                                                                  >  SRR14920167.2797815/1‑126 (MQ=60)
                                                       TAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCAATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAAC                                                                                              <  SRR14920167.3006042/151‑1 (MQ=60)
                                                         ATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGC                                                                                            <  SRR14920167.3845560/151‑1 (MQ=60)
                                                           CCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAT                                                                                          <  SRR14920167.685542/151‑1 (MQ=60)
                                                              TTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCAC                                                                                       <  SRR14920167.1887851/151‑1 (MQ=60)
                                                                TACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTC                                                                                     <  SRR14920167.5071069/151‑1 (MQ=60)
                                                                 ACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCC                                                                                    <  SRR14920167.3949732/151‑1 (MQ=60)
                                                                 ACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCC                                                                                    <  SRR14920167.2069631/151‑1 (MQ=60)
                                                                   GGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCT                                                                                  <  SRR14920167.3027587/151‑1 (MQ=60)
                                                                   GGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCT                                                                                  <  SRR14920167.3026892/151‑1 (MQ=60)
                                                                      ATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTTTCGGAAAGTTTTCTGCCAATAGAaaatatcattttagggacccatcactgccttgg                                                                               >  SRR14920167.2175316/1‑118 (MQ=60)
                                                                        ggagatgtgtataagagacagGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTG                                                                             <  SRR14920167.2876283/130‑1 (MQ=60)
                                                                        TTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGCCGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTACCTTGCTG                                                                             <  SRR14920167.1611630/151‑1 (MQ=60)
                                                                          TTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGACCGCATCACTCCCTTGCTGGT                                                                           <  SRR14920167.1919447/151‑1 (MQ=60)
                                                                          TTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGT                                                                           <  SRR14920167.4537766/151‑1 (MQ=60)
                                                                          TTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGT                                                                           <  SRR14920167.510256/151‑1 (MQ=60)
                                                                          TTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACCAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGT                                                                           <  SRR14920167.4440307/151‑1 (MQ=60)
                                                                             TCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGA                                                                        <  SRR14920167.4757340/151‑1 (MQ=60)
                                                                                TCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGCTGTATCATCGCCGTCCATTTTTCGACATACTAGATTAGTCTCGCCTGCCAGGAATTTTTCTGCCAATAGTACTTACCAAGTGAGGAACGCATCACgaccctgcttttaaagag                                                                     >  SRR14920167.5031764/1‑133 (MQ=60)
                                                                                TCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGTCAATAGAAATTATCAAGTGAGGAACTCATCACTCCCatgcttttaaaaac                                                                     >  SRR14920167.4925821/1‑137 (MQ=60)
                                                                                   AAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTTCCAATACACATTATCAAGCGCAGAACGCATCACTGCCTTGCTTGTAGAGGCGTG                                                                  >  SRR14920167.5048744/1‑151 (MQ=60)
                                                                                     ATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGGCTTCCAGAAATTTTTTTGTCGATTGATATTATCAAGTAAGGAACGCATCttttccgtgctgcttgttgcgtgaa                                                                >  SRR14920167.4483264/1‑126 (MQ=60)
                                                                                          ACTGTATTCAGGAGTAAATGGACGGCGCTGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCGAGAAGTTTTTttggttattggtattgtaaagagatacatgcaaaacattttttccggtagccgcgttgataaaa                                                           >  SRR14920167.1435032/1‑87 (MQ=60)
                                                                                                     GAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGT                                                <  SRR14920167.3073560/151‑1 (MQ=60)
                                                                                                              GACGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAAT                                       <  SRR14920167.4184205/151‑1 (MQ=60)
                                                                                                                CGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATAC                                     <  SRR14920167.135127/151‑1 (MQ=60)
                                                                                                                CGGCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATAC                                     <  SRR14920167.2782461/151‑1 (MQ=60)
                                                                                                                  TCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCgaccacaacactttcttccaagaggaggtatggattaatgggttcttggtttccttgatacttacagcgtgactaaattgtttgttggtcgctttcataaaa                                   >  SRR14920167.5065240/1‑49 (MQ=60)
                                                                                                                  TCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTACCGGAAATTTTTCTtccaagaaacggtatgaattaatgaactcatcgtatcctaaatactaacatcctaaatattttgtttgtacctattgtagaaacag                                   >  SRR14920167.244106/1‑65 (MQ=60)
                                                                                                                  TCGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCGCGCCGGCCAGATATTTTccttcccagtggcgtcggcgagaaaatgattgtttgtatccttaatactgacaggcagaacaatttggttggtccccgggttaaaaaaa                                   >  SRR14920167.3564874/1‑62 (MQ=53)
                                                                                                                   CGATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTA                                  <  SRR14920167.2340661/151‑1 (MQ=60)
                                                                                                                     ATGTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCACCTACCAAAAAATTTTCTCCCAACAGACATTATCgagggagaaatggttgtttcccttgttgatacatacatggataccatttttgttggtctccgttttacctaca                                >  SRR14920167.1388019/1‑78 (MQ=47)
                                                                                                                       GTATCATCGCCGTCCATTTTTCTACATACTAGATTCGTCTCGCCTGCCAGAAATTcttcttcccatagtcgttatcacgtgggtaactcagttcttcctttcttgaataggcacaggtaaaccagtttttggtaacgccaattcgtaaaag                              >  SRR14920167.2531885/1‑55 (MQ=60)
                                                                                                                       GTATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATG                              <  SRR14920167.5090966/151‑1 (MQ=60)
                                                                                                                        TATCTTCGCCGTCCATTTTTCTACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGC                             <  SRR14920167.2526021/151‑1 (MQ=60)
                                                                                                                        TATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGC                             <  SRR14920167.816416/151‑1 (MQ=60)
                                                                                                                        TATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGC                             <  SRR14920167.3926493/151‑1 (MQ=60)
                                                                                                                        TATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGC                             <  SRR14920167.3268976/151‑1 (MQ=60)
                                                                                                                        TATCATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAACTCTTCTGCCCATAGACAgtataaagtggggtaagcatcattatcttgctggaagaagctacaataaaatgattttttgtatcgcccatatctacatac                             >  SRR14920167.4005607/1‑70 (MQ=60)
                                                                                                                             TCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACC                        <  SRR14920167.245871/151‑1 (MQ=60)
                                                                                                                                 CGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTT                    <  SRR14920167.1066201/151‑1 (MQ=60)
                                                                                                                                   TCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTG                  <  SRR14920167.1399108/151‑1 (MQ=60)
                                                                                                                                     CATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTC                <  SRR14920167.2074444/151‑1 (MQ=60)
                                                                                                                                      ATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCACGTTAGGAACGCATCACTGCCTTGCTGGTAGCGTCGTGTATAAATTGGTTGTTGGTATAGCAAATTCTTACATGCAACCCATTTTGTAC               >  SRR14920167.1870543/1‑151 (MQ=60)
                                                                                                                                           TCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACC          <  SRR14920167.2728350/151‑1 (MQ=60)
                                                                                                                                           TCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACC          >  SRR14920167.5269835/1‑151 (MQ=60)
                                                                                                                                              ACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCG       >  SRR14920167.32734/1‑151 (MQ=60)
                                                                                                                                                ATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTT     >  SRR14920167.1708985/1‑151 (MQ=60)
                                                                                                                                                 TACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTT    >  SRR14920167.285134/1‑151 (MQ=60)
                                                                                                                                                 TACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTT    >  SRR14920167.654531/1‑151 (MQ=60)
                                                                                                                                                 TACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTT    >  SRR14920167.570085/1‑151 (MQ=60)
                                                                                                                                                 TACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTT    >  SRR14920167.569772/1‑151 (MQ=60)
                                                                                                                                                 TACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTT    >  SRR14920167.2451127/1‑151 (MQ=60)
                                                                                                                                                 TACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTT    >  SRR14920167.4372672/1‑151 (MQ=60)
                                                                                                                                                 TACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTT    >  SRR14920167.4353156/1‑151 (MQ=60)
                                                                                                                                                 TACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAAGTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTT    >  SRR14920167.3430429/1‑151 (MQ=60)
                                                                                                                                                   CTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTTTG  >  SRR14920167.2323515/1‑151 (MQ=60)
                                                                                                                                                   |                                                                                                                                                      
ATGTTAACCACTTTTTCAGGGGTCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTATCATCGCCGTCCATTTTTCGACATATTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCTGGTAGAGGCGTGGATAAATTGGTTGTTGGTATCGTAAATACCTACATGCAAACCATTTTGTCCGGACCCCGTTTTG  >  NZ_CP025268/1796937‑1797234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑