Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F1 I1 R1 254 498.2 21552474 99.3% 21401606 151.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_008463 2,707,727 N→G ?75P (CNT→CCT)  PA14_RS12740 ← DUF2285 domain‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0084632,707,7270NG99.7% 1485.6 / NA 393?75P (CNT→CCT) PA14_RS12740DUF2285 domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base N (0/0);  major base G (206/185);  minor base T (0/1);  total (206/187)
Fisher's exact test for biased strand distribution p-value = 4.74e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 399 total aligned reads displayed.

GGCAGCAGCCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCANGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTCCCAAGCCAGC  >  NC_008463/2707578‑2707876
                                                                                                                                                      |                                                                                                                                                     
ggcagCAGCCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGGCAgg                                                                                                                                                      >  1:10066523/1‑151 (MQ=255)
ggcagCAGCCGGGCCAATGCGACACCAGCACCAGGCGCGTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAgg                                                                                                                                                      <  2:5375200/151‑1 (MQ=255)
 acagcacCCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTAGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACGAC‑GGCATCGTGGTCAggg                                                                                                                                                     >  2:6009437/2‑151 (MQ=255)
  cagcagCCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGa                                                                                                                                                    <  2:2053772/151‑1 (MQ=255)
     cagcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAAcc                                                                                                                                                 >  1:10488361/1‑151 (MQ=255)
      agcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCa                                                                                                                                                <  1:7661373/151‑1 (MQ=255)
      agcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCa                                                                                                                                                >  1:2644994/1‑151 (MQ=255)
       gcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAg                                                                                                                                               <  2:9155833/151‑1 (MQ=255)
       gcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAg                                                                                                                                               <  2:5492890/151‑1 (MQ=255)
       gcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAg                                                                                                                                               <  2:4859421/151‑1 (MQ=255)
        ccGGGCCAATGCGACACCAGCACCAGGCGCGTGCCGGCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAgg                                                                                                                                              >  2:179593/1‑151 (MQ=255)
          gggCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGcc                                                                                                                                            >  1:10672157/1‑151 (MQ=255)
          gggCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGcc                                                                                                                                            >  1:5224155/1‑151 (MQ=255)
            gCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGCAACGCGCCAGAACGCGAAGGCATGGGCAACGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCAACGGGGTCAGGGAACCACGCCgg                                                                                                                                          <  2:2573963/151‑1 (MQ=255)
              cAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGAt                                                                                                                                        >  2:3953738/1‑151 (MQ=255)
              cAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGAt                                                                                                                                        <  2:5894873/151‑1 (MQ=255)
               aaTGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGACCGCGCCAGAACTCGAAGGCATGGGCGTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCAGCGTGGTCAGGGAACCAGGCCGGATg                                                                                                                                       >  2:9243641/1‑151 (MQ=255)
               aaTGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATg                                                                                                                                       <  2:5834878/151‑1 (MQ=255)
               aaTGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATg                                                                                                                                       <  2:1544450/151‑1 (MQ=255)
                 tGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATgcg                                                                                                                                     >  2:7510306/1‑151 (MQ=255)
                  gCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATgcgc                                                                                                                                    >  1:65492/1‑151 (MQ=255)
                   cGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGcgcg                                                                                                                                   <  1:7452214/151‑1 (MQ=255)
                   cGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGcgcg                                                                                                                                   >  2:6994247/1‑151 (MQ=255)
                     acacCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTc                                                                                                                                 <  1:1251256/151‑1 (MQ=255)
                     acacCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTc                                                                                                                                 <  2:2279410/151‑1 (MQ=255)
                     acacCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTc                                                                                                                                 <  2:6820958/151‑1 (MQ=255)
                     acacCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGGGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTc                                                                                                                                 <  2:2750825/151‑1 (MQ=255)
                      caccagcaccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGACCTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTACACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTcg                                                                                                                                >  2:1474298/1‑151 (MQ=255)
                      caccagcaccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTcg                                                                                                                                <  1:8158596/151‑1 (MQ=255)
                        ccagcaccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTcgcg                                                                                                                              <  1:2321813/151‑1 (MQ=255)
                         cagcaccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTcgcgc                                                                                                                             <  1:2166289/151‑1 (MQ=255)
                             cccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGACGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCAt                                                                                                                         <  2:6667978/150‑1 (MQ=255)
                             accagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCAt                                                                                                                         <  1:1741232/151‑1 (MQ=255)
                              ccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATc                                                                                                                        <  2:7158073/151‑1 (MQ=255)
                               cagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATcc                                                                                                                       <  1:5481792/151‑1 (MQ=255)
                               cagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATcc                                                                                                                       >  1:3420882/1‑151 (MQ=255)
                                   cgcTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAgg                                                                                                                   <  2:1873374/151‑1 (MQ=255)
                                    gcTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGc                                                                                                                  >  1:8921800/1‑151 (MQ=255)
                                    gcTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGc                                                                                                                  >  1:4970340/1‑151 (MQ=255)
                                      ttGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTg                                                                                                                >  2:7296336/1‑151 (MQ=255)
                                      ttGCCGTCGTGGAGCAGTTGCGTGCGGCCGGGAACGCGCCAGAACTCGAAGGCAGGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCCC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTg                                                                                                                <  2:3696995/151‑1 (MQ=255)
                                       tGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTgg                                                                                                               <  2:5387480/151‑1 (MQ=255)
                                         ccGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGt                                                                                                             >  1:200004/1‑151 (MQ=255)
                                         ccGGCGTGGATCAGTGGCTGGCGGCCGGGAACGCGCCAGACCTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGTTGCGCGTCGCGCGCATCCAAGGCTGGGt                                                                                                             <  1:4392350/151‑1 (MQ=255)
                                          cgtcgtGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTc                                                                                                            >  2:2448736/1‑151 (MQ=255)
                                           gtcgtGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCt                                                                                                           >  1:8331312/1‑151 (MQ=255)
                                           gtcgtGGATCAGGTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCt                                                                                                           <  2:8546249/151‑1 (MQ=255)
                                            tcgtGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCtt                                                                                                          >  1:9520211/1‑151 (MQ=255)
                                              gtGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCCTGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTcc                                                                                                        >  2:8667623/1‑151 (MQ=255)
                                               tGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCca                                                                                                       <  2:6721164/151‑1 (MQ=255)
                                               tGGATCAGTTGCTAGCGGCCGGGAACGCGCCAGACCACGAAGGCATGGGCTACGGGTGGCGGGTCGGCGTCGGGAGAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGCCCGCATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCca                                                                                                       <  1:3982384/151‑1 (MQ=255)
                                                  aTCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCcagca                                                                                                    >  2:5268491/1‑151 (MQ=255)
                                                   tattttgcttgcGGCCGGGAACGCGCCAGAACTCGATGGCATGGGCTTCGGGGGGCGGGTCGGAGTCGGGTTAGAGCTGCACCCC‑GGCATCGTGGTCAGGTAACCAGGCCGGATGGGCGTCGGGCGCATCCAAGGCTGGGTCTTCcagcag                                                                                                   <  1:9046786/147‑1 (MQ=255)
                                                   tCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCcagcag                                                                                                   >  1:3562404/1‑151 (MQ=255)
                                                    cAGTTGCTTGCGGCCGGGACCGCGCCAGAACTCGCAGGCATGGCCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAgcagg                                                                                                  <  1:4842389/151‑1 (MQ=255)
                                                     aGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAgcaggc                                                                                                 >  1:6022896/1‑151 (MQ=255)
                                                     aGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAgcaggc                                                                                                 >  1:4751512/1‑151 (MQ=255)
                                                        tgcttgcGGCCGGTCACGCGCCAGAACTCGCAGGCATGGGCTTCGGGTGGCGGGGCGGCGTCGGGAAAGAGCTGCACCAC‑GGCATCGTGGTCAGGGACCCAGGCCGGAGGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAgcaggcgca                                                                                              <  2:5657589/151‑1 (MQ=255)
                                                        tgcttgcGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAgcaggcgca                                                                                              <  2:1008392/151‑1 (MQ=255)
                                                          cttgcGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAgcaggcgcagg                                                                                            <  2:4716757/151‑1 (MQ=255)
                                                                gCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCaa                                                                                      <  2:3379489/151‑1 (MQ=255)
                                                                gCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCaa                                                                                      <  2:3125589/151‑1 (MQ=255)
                                                                gCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCAAGCAGGCGCAGGCTCCaa                                                                                      >  2:10446991/1‑151 (MQ=255)
                                                                   gggAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGcc                                                                                   >  1:1435175/1‑151 (MQ=255)
                                                                     gAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTg                                                                                 <  2:9368006/151‑1 (MQ=255)
                                                                     gAACGCGCCAGAACTCGAAGGCATGGGCGTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTg                                                                                 <  1:9160584/151‑1 (MQ=255)
                                                                      aaCGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTgc                                                                                <  2:6468593/151‑1 (MQ=255)
                                                                          cgcCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCACGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGcgccg                                                                            <  2:1144612/151‑1 (MQ=255)
                                                                            ccAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCcgcg                                                                          <  2:6318617/151‑1 (MQ=255)
                                                                              aGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTc                                                                        >  2:9103440/1‑151 (MQ=255)
                                                                               gAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTcc                                                                       >  1:5342430/1‑151 (MQ=255)
                                                                                    ctaaGGCTTGGGCTTCGGGTGGGGGGTCGGCGTCGGGATCGAGCTGCACCCC‑GGAATCGTGGTCTGGTAACCAGGCCGGTTGCGCGTCGCGCGCAACCATGGCTGGGTCTTCCAGCTGGCGCTGGCTCAACGCCTGCGCCGCGTCCGGCCa                                                                  <  2:9727213/149‑1 (MQ=255)
                                                                                     gAAGTCAGGGGTTTGGGGTGGGGGGGGGGGGTGGGTTTAGAGCGGCACCAG‑GGCTTGGTGGTCGGGTACCCTGGCGGGTTGCGGGTGGGGCCAATCCATGGCGGGGTATTCCTGATGGCGCTGGCTCCAAGCCTGCGCCGCGTCCGGCCAg                                                                 <  2:7609742/151‑1 (MQ=255)
                                                                                       aGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAgcg                                                               >  2:3822414/1‑151 (MQ=255)
                                                                                         gCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAgcggc                                                             >  2:4152059/1‑151 (MQ=255)
                                                                                           aTGGGCTTCGGGGGGCGGGTCGGCGTCGGGATAGAGCTGCACCCC‑GGCAGCGTGGTCCGGGAACCAGGCCGGATGCGCGTCGCGCGACACCAAGGCTGGTACTTCCAGCTGGCGCTGGCTCCCAGCCTGCGCCGCGTCCGGCCAGCGGCGa                                                           <  2:9591429/151‑1 (MQ=255)
                                                                                            tGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGAc                                                          >  2:333515/1‑151 (MQ=255)
                                                                                               gtttCGGGTGGCGGGTCGGCTTCGGTATAGAGCGCCACCCC‑GGCTTCGTGTTCTGGGAACCTGGCCGTTTGCGCGTCGCGCGCATCAAAGGCTGGGTCTTCCAGCTGGCGCAGGCCCCACGCCTGCGCCGCGTCCGGCCAGCGGCGACGgc                                                       <  2:687664/149‑1 (MQ=255)
                                                                                               gatgcgggtggcgggtggGCTTCGGTATAGAGCTGCACCAC‑GGCTTGGTGGTCTGGTAACCAGGCCGTTTGCGCGGCGCGCGCATCCATGGCTGGGTATACCAGCCGGCGCAGGCACCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGgc                                                       <  2:10262956/147‑1 (MQ=255)
                                                                                                cTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGgcg                                                      >  1:3842614/1‑151 (MQ=255)
                                                                                                    gggTGGCGGGACGGCGCCGGGATAGCGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGCCCGGATGCGCGTCGCGCGCATCAAAGGCTGGGTCTTCCAGCAGGCGCAGGATCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGc                                                  <  2:6115736/151‑1 (MQ=255)
                                                                                                      ggggCGGGTCGGCGTCGGGATAGACCTGCCCCAC‑GGAATCGTGGCCCGGGAACCCGGCCGGTTGCGCGTCGCGCGCATCCACGGCTGGGTCTACCCGCCGGCGCCGGCACCACGCCGGCCCCGCGTCCGGCCAGCGGCGACGGCGCAGCCa                                                <  2:3007973/149‑1 (MQ=255)
                                                                                                         gCGGGGCGGCGTCGGTATAGAGCT‑CACCCCGGGCTTCGGGGGCCGGGACCCAGGCCGGATGCGCGCCGCGCGAACCAACGGCTGGGTCTTCCAGCCGGCGCAGGCTCCACCCCGGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTc                                             <  2:7410052/151‑1 (MQ=255)
                                                                                                          cGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTcg                                            >  1:6920951/1‑151 (MQ=255)
                                                                                                           gggTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTcgc                                           >  1:4504779/1‑151 (MQ=255)
                                                                                                              tCGGCGTCGGGTTAGAGCGGCACCAG‑GGCTTCGTGTTCTGGGACCCTGGCGGGCTGCGCGTCGCGCGCTGCCACGGGTGGGTCTTCCAGCTGGCGCTGGCTCCACGCCGGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCgcggc                                        <  2:1274943/151‑1 (MQ=255)
                                                                                                                ggCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGcggcgg                                      >  1:4070902/1‑151 (MQ=255)
                                                                                                                  cGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCCTCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTa                                    >  1:6381664/1‑151 (MQ=255)
                                                                                                                    tCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCTGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAAt                                  >  2:9814678/1‑151 (MQ=255)
                                                                                                                       ggATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCgg                               >  1:5821102/1‑151 (MQ=255)
                                                                                                                       ggATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCgg                               >  2:1668336/1‑151 (MQ=255)
                                                                                                                       ggATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCgg                               >  1:10604887/1‑151 (MQ=255)
                                                                                                                        gtacgagCTGCCCCAC‑GGCATCGTGGTCCGGGAACCTGGCCGGTTGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCCGCAGGCGCAGGCACCACGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCggg                              <  2:5142845/147‑1 (MQ=255)
                                                                                                                        gATAGAGCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCggg                              >  2:4612383/1‑151 (MQ=255)
                                                                                                                           agagCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCCGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTACTCGGGAtt                           >  1:3061187/1‑151 (MQ=255)
                                                                                                                           agagCTGCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGAtt                           >  2:7937967/1‑151 (MQ=255)
                                                                                                                                 gCACCAC‑GGCATCGTGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGAGGCGACGGCGCAGCCAGTCGCGGCGGTACTCGGGATTCCTgcg                     >  2:98691/1‑151 (MQ=255)
                                                                                                                                                tGGTCAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTCCCAAg       >  1:2909835/1‑151 (MQ=255)
                                                                                                                                                 ggTCTGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCACGGCGGGGTCTTCCAGCCGGCGCAGGCGCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTCCCAAGc      <  2:8815211/151‑1 (MQ=255)
                                                                                                                                                    cAGGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTCCCAAGCCAg   >  1:10231950/1‑151 (MQ=255)
                                                                                                                                                      |                                                                                                                                                     
GGCAGCAGCCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCAC‑GGCATCGTGGTCANGGAACCAGGCCGGATGCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTCCCAAGCCAGC  >  NC_008463/2707578‑2707876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A