Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
256 |
492.8 |
21425088 |
99.3% |
21275112 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_008463 |
2,707,727 |
N→G |
?75P (CNT→CCT) |
PA14_RS12740 ← |
DUF2285 domain‑containing protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_008463 | 2,707,727 | 0 | N | G | 99.7%
| 1320.8
/ NA
| 343 | ?75P (CNT→CCT) | PA14_RS12740 | DUF2285 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base N (0/0); major base G (180/162); minor base T (0/1); total (180/163) |
| Fisher's exact test for biased strand distribution p-value = 4.75e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 354 total aligned reads displayed.
GCAGCAGCCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCANGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTCCCAAGCCAG > NC_008463/2707579‑2707875
|
cagcagCCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAggg < 2:7610840/150‑1 (MQ=255)
gcagcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGaa > 1:6290777/1‑150 (MQ=255)
cagcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAAc < 2:5707225/150‑1 (MQ=255)
agcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAAcc > 1:4885613/1‑150 (MQ=255)
gcCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCa > 2:8717087/1‑150 (MQ=255)
cGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAgg < 2:3006990/150‑1 (MQ=255)
gggCCAATGCGCCACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGc < 2:375331/150‑1 (MQ=255)
gggCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGACCCAGGc > 1:4182924/1‑150 (MQ=255)
gggCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGc < 2:10525639/150‑1 (MQ=255)
ggCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGcc < 2:3185392/150‑1 (MQ=255)
ggCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGcc > 1:6478035/1‑150 (MQ=255)
ggCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGcc < 2:6933382/150‑1 (MQ=255)
cAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGa < 2:273403/150‑1 (MQ=255)
aaTGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAt > 2:1966881/1‑150 (MQ=255)
gCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑gcg < 1:5475820/150‑1 (MQ=255)
gCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑gcg < 1:8461687/150‑1 (MQ=255)
gACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGACCTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑Gcgcg > 1:5721519/1‑150 (MQ=255)
gACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑Gcgcg > 2:7275366/1‑150 (MQ=255)
gACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑Gcgcg > 2:7823856/1‑150 (MQ=255)
acacCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGt < 1:3079515/150‑1 (MQ=255)
acacCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGt < 1:8770473/150‑1 (MQ=255)
caccagcaccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTc > 1:9289588/1‑150 (MQ=255)
caccagcaccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTc < 2:853945/150‑1 (MQ=255)
caccagcaccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTc > 2:2075694/1‑150 (MQ=255)
agcaccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTcgcgc < 2:7673222/150‑1 (MQ=255)
agcaccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTcgcgc < 1:393933/150‑1 (MQ=255)
agcaccagGCGCTTGCCGTCGTGGATCAGGTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTcgcgc < 1:2699489/150‑1 (MQ=255)
gcaccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTcgcgcg > 1:4700643/1‑150 (MQ=255)
accagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGTGTGGCGGGTAGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCTCa < 1:4274512/150‑1 (MQ=255)
accagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCa > 2:5327185/1‑150 (MQ=255)
ccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCAt < 2:1706360/150‑1 (MQ=255)
ccagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCAt < 1:10145953/150‑1 (MQ=255)
cagGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATc > 1:1778897/1‑150 (MQ=255)
agGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCGGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCTTCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATcc > 2:8866168/1‑150 (MQ=255)
ggCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCa > 2:10324294/1‑150 (MQ=255)
gcgcTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCaa < 1:6020378/150‑1 (MQ=255)
gcTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAgg > 2:5038738/1‑150 (MQ=255)
cTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGc > 1:8181850/1‑150 (MQ=255)
cTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGc > 1:5117171/1‑150 (MQ=255)
ttGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCt > 1:6933860/1‑150 (MQ=255)
ccGTCGTGGATCTGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTggg < 2:4701737/150‑1 (MQ=255)
ccGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGTT‑GCGCGTCGCGCGCATCCAAGGCTggg > 2:7060024/1‑150 (MQ=255)
gtcgtGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGACGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTc < 2:9938500/150‑1 (MQ=255)
cgtGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCtt < 1:7736109/150‑1 (MQ=255)
gtGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTc < 2:1588767/150‑1 (MQ=255)
gtGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTc > 2:9707790/1‑150 (MQ=255)
tGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTcc < 1:10076489/150‑1 (MQ=255)
ggATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCca > 2:357054/1‑150 (MQ=255)
gATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCcag < 1:241115/150‑1 (MQ=255)
gATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCcag > 2:3472719/1‑150 (MQ=255)
gATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGAGAGAGCTGCACCACGGCTTCGTGGTCAGGGAACAGGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCGTCcag > 2:9670385/1‑150 (MQ=255)
tCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGCTAGAGCTGCACCACGGCATCGGGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGGCTTCcagct > 2:6087131/1‑149 (MQ=255)
tCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCcagca > 2:2510498/1‑150 (MQ=255)
tCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGCAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCcagca < 1:4030076/150‑1 (MQ=255)
gcttgcGGCCGGTAACGCGCCAGAACTCGAAGGGATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGTGCTGCACCACGGCATCGTGGTCAGGGATCCAGGCCGGAT‑GCTCGTCGCGCGCATCCAAGGCTGGGTCTTCCAgcaggcgca < 2:8401421/150‑1 (MQ=255)
cttgcGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAgcaggcgcag > 1:6826910/1‑150 (MQ=255)
gcGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCt < 2:1514171/150‑1 (MQ=255)
ggCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTcc > 2:4115159/1‑150 (MQ=255)
gCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCa > 1:7556335/1‑150 (MQ=255)
gCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCa > 2:9290806/1‑150 (MQ=255)
gCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCa > 1:8001040/1‑150 (MQ=255)
ccGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCaa < 1:9366270/150‑1 (MQ=255)
cGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAg < 2:4302536/150‑1 (MQ=255)
gggAACGAGCCAGAACTCGAAGGCATGGGCTTCGGGAGGCGGGTCGGCGTCGGGATACAGCAGCACCACGGCTTCGGGGTCAGGGAACCAGGCCGGAT‑GCGCGTCTCGCGCATCCCAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGc > 2:5593143/1‑150 (MQ=255)
gAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGACCCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCt > 2:1740162/1‑150 (MQ=255)
aaCGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTg < 1:9507100/150‑1 (MQ=255)
gcgcCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTTGTCAGGTAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTgcgc < 2:1121738/150‑1 (MQ=255)
cgcCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGcgcc > 2:2287942/1‑150 (MQ=255)
gcCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGcgccg > 1:9913503/1‑150 (MQ=255)
cAGAACTCGATGGCATGGGATTCGGGTGGCGGTTCGGCGTCGGGATAGTGCTGCACCACGGCTTCTTGGTCTGGGAACCTGGCCGGAT‑GCGCGTCGCGCGCTTCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCcgcg < 1:1465361/150‑1 (MQ=255)
aGAACTCGCAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGt < 2:10209942/150‑1 (MQ=255)
aGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGt > 1:7193278/1‑150 (MQ=255)
gAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCa > 1:349188/1‑150 (MQ=255)
aaGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCATCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAg > 1:3613996/1‑150 (MQ=255)
tGGGATTGGGGTGGGGGGTCGGCGGCGGGATACCGCTCCCCCCCGGCATCGTGGACGGGTACCCTGGCGGTTT‑GCGCGACGCGCGCATCCACGGCTGGTTCTTCAACCCGGCGCAGGCACCAAGCGTGCGCCGCGTCCGGCCAGCGGCGa < 2:6372396/150‑1 (MQ=255)
tgggggTGGCGGGTCGGGGTCGGGATAGAGCGGCACCACGGCATGGTGGCCTGGGAACCAGGCCGGTG‑GCGCGTCGCGCGCATCCACGGCTGGGTCTTCCTGCTGGCGCAGGCTCCACGCCTGCGCCGCGTCCGGCCAGCGGCGACGgcg < 2:6124361/147‑1 (MQ=255)
tCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGTTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGgcgc > 2:744996/1‑150 (MQ=255)
ggggTGGCGGGTCGGCGGCGGGATCGTGCGGCCCCAGGGCATCGGGGTCTGGTACCCCGGCCGTAT‑GCGCGTCGCGCGCATCCACGGGTGGGTCTACCAGCTGGCGCAGGATCCAACCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCa < 2:4818620/149‑1 (MQ=255)
gTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGcc > 1:44474/1‑150 (MQ=255)
gTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGcc > 2:2440734/1‑150 (MQ=255)
gTCGGCGTCGGGATAGTGTGGCACCACGGAAGGGTGGACAGGGACCCCGGCCGGAG‑GCGGGCCGCGCGCATCAACGGGTGGGTTTACCCGCAGGCCCTGCCCCCAAGCGTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTcgcg < 2:5837240/150‑1 (MQ=255)
cGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCgcggc > 2:8335822/1‑150 (MQ=255)
cGTCGGGATAGAGCTGCACCCCGGCATCGTGGTCCGGGAACCCGGCGGGAG‑GCGCGTCGCGCGCATCCACGGCTGGGTCTTCCAGCCGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGt < 2:9396064/150‑1 (MQ=255)
gTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGtc > 1:5666282/1‑149 (MQ=255)
gTCGGGATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTa > 2:4407607/1‑150 (MQ=255)
ggATAGAGCTGCACCACGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCg > 1:2022718/1‑150 (MQ=255)
gATAGTGCTGCCCCACGGCATCGTGTACTGGCAACCAGGCCGGAG‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGCCGCAGGCTCCAACCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCgg < 2:6552129/150‑1 (MQ=255)
gccccacGGCATGGTGGACTGGGACCCCGGCCGGAG‑GCGCGTCGCGCGCATCCACGGCTGGGTCTTCCAGCAGGCGCAGGCTCCACGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTgc < 2:7976715/147‑1 (MQ=255)
acGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAgg > 1:588407/1‑150 (MQ=255)
cGGCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGt > 2:875669/1‑150 (MQ=255)
ggCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTa > 1:6530509/1‑150 (MQ=255)
gCATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTAt > 1:1062484/1‑150 (MQ=255)
cATCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTAtt > 2:8202374/1‑150 (MQ=255)
aTCGTGGTCTGGTAACCAGGCCGTTT‑GGGCGTCGCGCGAAACCATGGCTGGTTCTTCCAGCTGGCGCTGGCTCCACGCCTGCCCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTAGTc < 2:7386183/150‑1 (MQ=255)
aTCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTc > 2:514634/1‑150 (MQ=255)
tCGTGGTCAGGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGTCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTcc > 1:7326015/1‑150 (MQ=255)
ggggTCCGGGAACCCCGGCGGGTGGCGCGCGGCGCGAAGCAAGGGGTGGTTGTTCCTGCAGGCGCTGGACCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTccc < 1:10503474/148‑1 (MQ=255)
gTGGTCCGGGACCCAGGCCGTAG‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCCGGCGCAGGCCCCAAGCCTGCCCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTCCCa < 2:7034807/150‑1 (MQ=255)
tGGTCAGTGAACCCGGCCGTAG‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCTGGCTCCAAGCCGGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTCCCaa < 2:10113912/150‑1 (MQ=255)
aGGGAACCCGGCCGGAG‑GCGCGTCGCGCGATTCCATGGCGGGGTGTTCCAGCTGGCGCAGGAGCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTCCCAAGCCAg < 2:5767827/150‑1 (MQ=255)
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GCAGCAGCCGGGCCAATGCGACACCAGCACCAGGCGCTTGCCGTCGTGGATCAGTTGCTTGCGGCCGGGAACGCGCCAGAACTCGAAGGCATGGGCTTCGGGTGGCGGGTCGGCGTCGGGATAGAGCTGCACCACGGCATCGTGGTCANGGAACCAGGCCGGAT‑GCGCGTCGCGCGCATCCAAGGCTGGGTCTTCCAGCAGGCGCAGGCTCCAAGCCTGCGCCGCGTCCGGCCAGCGGCGACGGCGCAGCCAGTCGCGGCGGTAATCGGGATTCCTGCGCAGGTATTCCCAAGCCAG > NC_008463/2707579‑2707875
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
