Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F1 I1 R1
|
16 |
318.8 |
8593768 |
98.1% |
8430486 |
149.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
AP012306 |
3,245,072 |
Δ82 bp |
intergenic (‑91/‑736) |
pyrE ← / → yicC |
orotate phosphoribosyltransferase/conserved protein |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
AP012306 |
3245072 |
3245153 |
82 |
347 [0] |
[0] 349 |
pyrE/yicC |
orotate phosphoribosyltransferase/conserved protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
AP012306 |
= 3245071 | 0 (0.000) | 328 (1.110) |
179/278 |
0.2 |
100% |
intergenic (‑90/‑818) |
pyrE/yicC |
orotate phosphoribosyltransferase/conserved protein |
| ? | AP012306 |
3245154 = |
0 (0.000) | intergenic (‑173/‑735) |
pyrE/yicC |
orotate phosphoribosyltransferase/conserved protein |
GATK/CNVnator alignment
N/A
