Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
148 |
28.0 |
2229078 |
88.9% |
1981650 |
107.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
3,972,184 |
+C |
intergenic (‑136/‑395) |
h16_A3682 ← / → h16_A3683 |
putative methyltransferase/Hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 3,972,182 | 1 | . | C | 100.0%
| 193.5
/ NA
| 50 | intergenic (‑134/‑397) | h16_A3682/h16_A3683 | putative methyltransferase/Hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (27/23); total (27/23) |
GTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTG > AM260479/3972059‑3972302
|
gTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 2:133040/134‑1 (MQ=255)
gTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 1:686554/134‑1 (MQ=255)
gTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 1:390290/134‑1 (MQ=255)
cTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGa < 1:618128/133‑1 (MQ=255)
cTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt < 1:581151/134‑1 (MQ=255)
gCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGtt > 2:445207/1‑106 (MQ=255)
gCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGtt < 1:445207/106‑1 (MQ=255)
gCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCAtt > 2:233696/1‑134 (MQ=255)
cgTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc > 1:505870/1‑93 (MQ=255)
cgTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 2:505870/93‑1 (MQ=255)
gggATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTcc > 1:146291/1‑134 (MQ=255)
cGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 2:274951/67‑1 (MQ=255)
cGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc > 1:274951/1‑67 (MQ=255)
ggTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc > 1:846344/1‑66 (MQ=255)
ggTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 2:846344/66‑1 (MQ=255)
aaCCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAAcc > 2:134029/1‑134 (MQ=255)
tGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt > 1:721858/1‑59 (MQ=255)
tGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt < 2:721858/59‑1 (MQ=255)
tGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGcc > 2:613263/1‑134 (MQ=255)
acacGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCt < 2:146291/133‑1 (MQ=255)
gTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTg > 1:492733/1‑55 (MQ=255)
gTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTg < 2:492733/55‑1 (MQ=255)
gTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAAc > 1:795316/1‑134 (MQ=255)
tAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGa > 1:161131/1‑133 (MQ=255)
acacCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACa < 2:795316/133‑1 (MQ=255)
ccccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGtat > 1:842002/1‑51 (MQ=255)
ccccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGtat < 2:842002/51‑1 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 2:944958/36‑1 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc > 1:944958/1‑36 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt > 2:517465/1‑39 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt < 1:517465/39‑1 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCa < 2:1056006/60‑1 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCa > 1:1056006/1‑60 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCt < 2:436514/115‑1 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCt > 1:436514/1‑115 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCAcg > 1:69809/1‑134 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGAc < 1:690531/126‑1 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGAc > 2:690531/1‑126 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCACATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGAt < 1:245816/104‑1 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCACATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGAt > 2:245816/1‑104 (MQ=255)
ttCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTcccc > 1:172102/1‑92 (MQ=255)
ttCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTcccc < 2:172102/92‑1 (MQ=255)
cGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACa < 2:441058/122‑1 (MQ=255)
cGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACa > 1:441058/1‑122 (MQ=255)
cGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGAtt > 1:318627/1‑134 (MQ=255)
ggCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTg > 2:288943/1‑134 (MQ=255)
gCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTg > 2:1073402/1‑133 (MQ=255)
cTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGAtgtg > 2:348342/1‑134 (MQ=255)
ccGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCgtg < 2:81847/83‑1 (MQ=255)
ccGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCgtg > 1:81847/1‑83 (MQ=255)
|
GTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTG > AM260479/3972059‑3972302
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGCCATTTGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGGGATGCC > AM260479/3972042‑3972330
|
gattagcgagtgtctcgtgggctcggagatgtgtataagagacagCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTG < GWNJ‑0478:712:GW2002102894th:2:1215:6645:21462/105‑1 (MQ=60)
tgttttattttctttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACG < GWNJ‑0478:712:GW2002102894th:2:2212:11139:91331/58‑1 (MQ=60)
ccgcttctattggcatgtttattttttggctttccttttttttttttcaagcagaagacggcatacgagattagcgagtgtccgtgggctcggagatgtgtataagagacaGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTAT < GWNJ‑0478:712:GW2002102894th:2:2113:2820:30288/39‑1 (MQ=60)
gtataagagacagCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTAT < GWNJ‑0478:712:GW2002102894th:2:1210:11660:40988/136‑1 (MQ=60)
CGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATAC < GWNJ‑0478:712:GW2002102894th:2:2109:16753:32110/150‑1 (MQ=60)
CGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATAC < GWNJ‑0478:712:GW2002102894th:2:1208:15376:33237/150‑1 (MQ=60)
gagctttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagCGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGC < GWNJ‑0478:712:GW2002102894th:2:1214:16570:13458/69‑1 (MQ=60)
GCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGC < GWNJ‑0478:712:GW2002102894th:2:2103:18293:81523/150‑1 (MQ=60)
GCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGG < GWNJ‑0478:712:GW2002102894th:2:2104:2699:19348/149‑1 (MQ=60)
GCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACctgtctcttatacacatctccgagccc > GWNJ‑0478:712:GW2002102894th:2:1215:12803:55073/1‑123 (MQ=60)
cctcctctttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaggtatacgcCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCG < GWNJ‑0478:712:GW2002102894th:2:2105:7849:33988/57‑1 (MQ=60)
GTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCC > GWNJ‑0478:712:GW2002102894th:2:1111:16068:10232/1‑150 (MQ=60)
tcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCG < GWNJ‑0478:712:GW2002102894th:2:2108:9780:18881/82‑1 (MQ=60)
GATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgc > GWNJ‑0478:712:GW2002102894th:2:1201:11124:16144/1‑97 (MQ=60)
ATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACctgtctcttatacacatctccgaacccacgagacactcgctaatctcgtatgcc > GWNJ‑0478:712:GW2002102894th:2:2203:12064:7568/1‑96 (MQ=60)
cggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCC < GWNJ‑0478:712:GW2002102894th:2:1202:8609:54446/95‑1 (MQ=60)
ATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttct > GWNJ‑0478:712:GW2002102894th:2:2110:11518:29855/1‑89 (MQ=60)
gcgagtgtctcgtgggctcggagatgtgtataagagacagGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAAC < GWNJ‑0478:712:GW2002102894th:2:2111:13960:60770/110‑1 (MQ=60)
gtgtataagagacagGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCACATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAAC < GWNJ‑0478:712:GW2002102894th:2:1114:19940:48865/134‑1 (MQ=60)
GTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgctt > GWNJ‑0478:712:GW2002102894th:2:1212:4817:90144/1‑86 (MQ=60)
GTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACT > GWNJ‑0478:712:GW2002102894th:2:2114:9199:17085/1‑150 (MQ=60)
CGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGAC > GWNJ‑0478:712:GW2002102894th:2:1111:5053:90640/1‑149 (MQ=60)
CACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaa > GWNJ‑0478:712:GW2002102894th:2:2201:4847:78214/1‑82 (MQ=60)
CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaacaaaaaa > GWNJ‑0478:712:GW2002102894th:2:2207:17340:6809/1‑66 (MQ=60)
CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttc > GWNJ‑0478:712:GW2002102894th:2:2214:11272:13137/1‑91 (MQ=60)
CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCtgtc > GWNJ‑0478:712:GW2002102894th:2:1211:5136:92302/1‑146 (MQ=60)
CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGC > GWNJ‑0478:712:GW2002102894th:2:1104:20248:52251/1‑150 (MQ=60)
GTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCctggttgctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaaatacataagatcaaaaa > GWNJ‑0478:712:GW2002102894th:2:1113:10496:40514/1‑42 (MQ=60)
ATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCtgtctcttatacacatctccgagccc > GWNJ‑0478:712:GW2002102894th:2:1110:4698:53240/1‑123 (MQ=60)
CGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaagaaaaaa > GWNJ‑0478:712:GW2002102894th:2:2214:4514:83768/1‑63 (MQ=60)
CGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTG > GWNJ‑0478:712:GW2002102894th:2:1210:19512:18493/1‑150 (MQ=60)
CGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTG > GWNJ‑0478:712:GW2002102894th:2:1202:11213:98648/1‑150 (MQ=60)
GTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGG < GWNJ‑0478:712:GW2002102894th:2:2109:2280:55449/150‑1 (MQ=60)
TTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCtgtctcttatacacatctccgagcccacgagacact > GWNJ‑0478:712:GW2002102894th:2:1107:1733:27294/1‑114 (MQ=60)
CACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCtgtctcttatacacatctccgagcccacgagac > GWNJ‑0478:712:GW2002102894th:2:1212:7148:89941/1‑116 (MQ=60)
GTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACctgtctcttataccacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:1106:13211:57084/1‑70 (MQ=60)
GTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGG > GWNJ‑0478:712:GW2002102894th:2:2104:20245:16412/1‑150 (MQ=60)
GTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGG > GWNJ‑0478:712:GW2002102894th:2:1215:17329:51976/1‑150 (MQ=60)
GTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGG > GWNJ‑0478:712:GW2002102894th:2:1109:8793:51378/1‑150 (MQ=60)
TATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGtctcttat > GWNJ‑0478:712:GW2002102894th:2:1213:5007:30246/1‑142 (MQ=60)
ATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGGG < GWNJ‑0478:712:GW2002102894th:2:1109:8311:39966/149‑1 (MQ=60)
gcCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGGGATGCC < GWNJ‑0478:712:GW2002102894th:2:1115:13066:84929/148‑1 (MQ=60)
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CCGCCATTTGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGGGATGCC > AM260479/3972042‑3972330
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
