Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
148 |
28.0 |
2229078 |
88.9% |
1981650 |
107.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
3,998,635 |
+C |
intergenic (‑221/+527) |
h16_A3705 ← / ← h16_A3706 |
transcriptional regulator, LysR‑family/conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 3,998,633 | 1 | . | C | 100.0%
| 145.6
/ NA
| 38 | intergenic (‑219/+529) | h16_A3705/h16_A3706 | transcriptional regulator, LysR‑family/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (23/15); total (23/15) |
ATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCCC > AM260479/3998510‑3998761
|
atatGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGc > 2:793861/1‑134 (MQ=255)
gAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCa < 1:859536/134‑1 (MQ=255)
cTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCgccgccgcc > 2:598763/1‑134 (MQ=255)
aTCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCt < 2:80316/130‑1 (MQ=255)
aTCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCt > 1:80316/1‑130 (MQ=255)
aTCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCg > 1:646321/1‑134 (MQ=255)
aTCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCg > 1:777894/1‑134 (MQ=255)
aTGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCg > 2:340971/1‑133 (MQ=255)
aTGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGACACCCTCGCCGCCGCCCTGTCGGCCg > 2:150943/1‑133 (MQ=255)
tGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCa > 1:984002/1‑134 (MQ=255)
cAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑cc > 1:267859/1‑87 (MQ=255)
cAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑cc < 2:267859/87‑1 (MQ=255)
gTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGa < 2:984002/133‑1 (MQ=255)
gTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGACACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGa < 1:150943/133‑1 (MQ=255)
tcgtcgAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGc < 1:953598/108‑1 (MQ=255)
tcgtcgAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGc > 2:953598/1‑108 (MQ=255)
gtcgAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAg > 2:918770/1‑134 (MQ=255)
gtcgAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAg > 1:1096410/1‑134 (MQ=255)
gAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTc > 2:641754/1‑134 (MQ=255)
gAAGTGACGGCTCAGGCATCCATGCAACAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTATCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGtt < 1:422049/133‑1 (MQ=255)
gACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACCGCAAGTTCGAtgt > 2:803253/1‑134 (MQ=255)
cATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACg < 1:641754/134‑1 (MQ=255)
tCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGgc < 2:646321/134‑1 (MQ=255)
gaAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTc > 1:995192/1‑46 (MQ=38)
gaAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTc < 2:995192/46‑1 (MQ=38)
aaGCCTGAATCATGAAAACCAACCGCTCCGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAg > 2:927163/1‑134 (MQ=255)
aaGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAg > 1:840249/1‑134 (MQ=255)
aGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGt > 2:253812/1‑134 (MQ=255)
gCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGtt < 1:918770/134‑1 (MQ=255)
ccTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGtt > 1:998451/1‑97 (MQ=255)
ccTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGtt < 2:998451/97‑1 (MQ=255)
ccTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTc > 2:869724/1‑134 (MQ=255)
tGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCg < 2:440520/72‑1 (MQ=255)
tGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCg > 1:440520/1‑72 (MQ=255)
aTGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTc < 2:775732/126‑1 (MQ=255)
aTGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTc > 1:775732/1‑126 (MQ=255)
aTGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCg > 2:668624/1‑132 (MQ=255)
aTGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCg < 1:668624/132‑1 (MQ=255)
cGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGgcgc < 2:777894/134‑1 (MQ=255)
cTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACGCCGACGGCGccc > 1:832526/1‑134 (MQ=255)
|
ATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCCC > AM260479/3998510‑3998761
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTGTGGATCCTGATATTTATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCCCGCACCGGCAAGTTCGATCCGTAC > AM260479/3998487‑3998784
|
atgtgtataagagacagTTATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCC < GWNJ‑0478:712:GW2002102894th:2:2215:6608:76405/133‑1 (MQ=60)
ATTGTGGATCCTGATATTTATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCC > GWNJ‑0478:712:GW2002102894th:2:2215:14926:33603/1‑150 (MQ=60)
gggctcggagatgtgtataagagacaGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCC < GWNJ‑0478:712:GW2002102894th:2:2215:5866:64651/123‑1 (MQ=60)
TCCTGATATTTATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCT > GWNJ‑0478:712:GW2002102894th:2:1114:13875:76168/1‑150 (MQ=60)
GGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCC < GWNJ‑0478:712:GW2002102894th:2:2203:19356:90040/150‑1 (MQ=60)
nnnnnngnnnncggagatgtgtataagagacagATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCC < GWNJ‑0478:712:GW2002102894th:2:2212:9050:101304/116‑1 (MQ=60)
GCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGG > GWNJ‑0478:712:GW2002102894th:2:1107:17216:18139/1‑150 (MQ=60)
GCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGG > GWNJ‑0478:712:GW2002102894th:2:2107:1536:90285/1‑150 (MQ=60)
GCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGG > GWNJ‑0478:712:GW2002102894th:2:2115:6359:29309/1‑150 (MQ=60)
TATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCAC > GWNJ‑0478:712:GW2002102894th:2:2211:1792:30133/1‑150 (MQ=60)
AGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCctgtctcttatacacatctccgagcccacg > GWNJ‑0478:712:GW2002102894th:2:1116:1808:69727/1‑117 (MQ=60)
ataagagacagATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGC < GWNJ‑0478:712:GW2002102894th:2:2207:13097:57441/138‑1 (MQ=60)
GCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGT > GWNJ‑0478:712:GW2002102894th:2:2216:10241:12075/1‑150 (MQ=60)
AGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGACACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATG < GWNJ‑0478:712:GW2002102894th:2:1111:7354:35666/149‑1 (MQ=60)
CGAAGTGACGGCTCAGGCATCCATGCAACAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTATCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGA < GWNJ‑0478:712:GW2002102894th:2:1211:3938:15377/149‑1 (MQ=60)
GCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCA < GWNJ‑0478:712:GW2002102894th:2:2107:13147:63612/150‑1 (MQ=60)
CATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:2211:3182:90689/1‑76 (MQ=60)
TCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGT > GWNJ‑0478:712:GW2002102894th:2:2201:10062:66359/1‑150 (MQ=60)
ATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACtgtctcttatacacatctccg > GWNJ‑0478:712:GW2002102894th:2:2210:17048:8954/1‑128 (MQ=60)
GCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACctgtctcttatacacatctccgagcccacgagacactcgctaatctcg > GWNJ‑0478:712:GW2002102894th:2:1210:7192:15576/1‑102 (MQ=60)
GAGAAAGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTAC > GWNJ‑0478:712:GW2002102894th:2:2115:11255:18650/1‑150 (MQ=60)
AGCCTGAATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGA < GWNJ‑0478:712:GW2002102894th:2:2209:16646:53249/150‑1 (MQ=60)
ATCATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCC < GWNJ‑0478:712:GW2002102894th:2:2108:10494:28935/150‑1 (MQ=60)
CATGAAAACCAACCGCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACGCCGACGGCGCCCG > GWNJ‑0478:712:GW2002102894th:2:2201:5016:15497/1‑150 (MQ=60)
GCTACGCCCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCtgtctcttatacacatctc > GWNJ‑0478:712:GW2002102894th:2:1207:8918:88441/1‑131 (MQ=60)
CTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCCCGCACCGGCAAGTTCGATCCGTAC > GWNJ‑0478:712:GW2002102894th:2:1206:1968:46439/1‑150 (MQ=60)
|
ATTGTGGATCCTGATATTTATTGATATGAGGGAAATGCCTAATATCTAGCCATCGGATGCCGCAATGCAACATAGTCTTTCGTCGAAGTGACGGCTCAGGCATCCATGCAATAGAGAAAGCCTGAATCATGAAAACCAACCGCTACG‑CCTGATCGCTGTCGCCACCCTCGCCGCCGCCCTGTCGGCCGCACCGGCCTTTGCCAAGAACGGCAAGTTCGATGTGTTCACCGACGGCGCCAAGGTAGCCAAGTTCGATCCGTACACCGACGGCGCCCGCACCGGCAAGTTCGATCCGTAC > AM260479/3998487‑3998784
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
